Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02401

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,542,528	+		CCNA_02400	0.35	-0.7
2,542,537	-		CCNA_02400	0.36	-0.5
2,542,541	-		CCNA_02400	0.36	-0.7
2,542,568	+		CCNA_02400	0.38	-0.7
2,542,572	+		CCNA_02400	0.39	+1.0
2,542,572	+		CCNA_02400	0.39	+0.9
2,542,587	+		CCNA_02400	0.40	+0.4
2,542,589	+		CCNA_02400	0.40	-1.3
2,542,594	+		CCNA_02400	0.40	-0.8
2,542,594	+		CCNA_02400	0.40	+1.6
2,542,601	+		CCNA_02400	0.41	-0.2
2,542,604	-		CCNA_02400	0.41	+1.5
2,542,604	-		CCNA_02400	0.41	+0.2
2,542,604	-		CCNA_02400	0.41	+0.3
2,542,620	-		CCNA_02400	0.42	-0.4
2,542,657	-		CCNA_02400	0.45	-0.6
2,542,663	-				+3.3
2,542,728	-		CCNA_02400	0.51	+1.0
2,542,731	+		CCNA_02400	0.51	+1.9
2,542,779	-		CCNA_02400	0.55	+0.6
2,542,784	+		CCNA_02400	0.55	+0.8
2,542,791	+		CCNA_02400	0.56	-0.7
2,542,799	+		CCNA_02400	0.57	-0.1
2,542,841	+		CCNA_02400	0.60	+1.5
2,542,899	+		CCNA_02400	0.65	-0.2
2,542,899	+		CCNA_02400	0.65	-0.0
2,542,905	-		CCNA_02400	0.65	-0.7
2,542,905	-		CCNA_02400	0.65	-0.2
2,542,907	-		CCNA_02400	0.65	-1.6
2,542,907	-		CCNA_02400	0.65	-0.0
2,542,907	-		CCNA_02400	0.65	+1.6
2,542,916	+		CCNA_02400	0.66	+0.8
2,542,938	+		CCNA_02400	0.68	-1.8
2,542,974	+		CCNA_02400	0.70	-1.4
2,542,982	-		CCNA_02400	0.71	-0.1
2,543,005	-		CCNA_02400	0.73	+0.6
2,543,005	-		CCNA_02400	0.73	-1.2
2,543,005	-		CCNA_02400	0.73	+2.0
2,543,011	+		CCNA_02400	0.73	-1.1
2,543,013	+		CCNA_02400	0.74	+2.3
2,543,076	+		CCNA_02400	0.79	+1.8
2,543,078	-		CCNA_02400	0.79	-1.2
2,543,097	+		CCNA_02400	0.80	-0.5
2,543,118	+		CCNA_02400	0.82	+0.9
2,543,131	+		CCNA_02400	0.83	-1.2
2,543,222	-				+1.9
2,543,222	-				+1.0
2,543,252	-				+0.8
2,543,270	-				+1.2
2,543,272	+				+0.3
2,543,279	+				-0.7
2,543,285	-				-0.3
2,543,287	-				-1.9
2,543,287	-				-0.3
2,543,287	-				-0.1
2,543,287	-				+0.7
2,543,344	+				+0.5
2,543,350	-				+2.0
2,543,379	-				-2.6
2,543,459	+				+2.5
2,543,459	+				-1.0
2,543,459	+				+1.1
2,543,459	+				+1.4
2,543,467	-				+3.8
2,543,486	-				+0.4
2,543,494	-				-1.3
2,543,513	-				+0.1
2,543,523	-				-0.8
2,543,526	+				+1.1
2,543,526	+				+1.7
2,543,546	+				-0.5
2,543,558	+				-0.9
2,543,563	+				+2.8
2,543,566	-				+0.2
2,543,645	-		CCNA_02401	0.13	-0.0
2,543,679	+		CCNA_02401	0.16	+0.7
2,543,682	-		CCNA_02401	0.16	+1.8
2,543,721	+		CCNA_02401	0.20	+0.6
2,543,729	-		CCNA_02401	0.21	+0.3
2,543,773	+		CCNA_02401	0.25	-0.6
2,543,790	+		CCNA_02401	0.26	+2.3
2,543,790	+		CCNA_02401	0.26	+1.6
2,543,798	-		CCNA_02401	0.27	-1.2
2,543,800	+		CCNA_02401	0.27	-0.2
2,543,811	+		CCNA_02401	0.28	+1.2
2,543,811	+		CCNA_02401	0.28	+2.0
2,543,812	+		CCNA_02401	0.29	+1.4
2,543,850	+		CCNA_02401	0.32	+1.3
2,543,850	+		CCNA_02401	0.32	+1.9
2,543,900	+		CCNA_02401	0.37	+1.6
2,543,902	+		CCNA_02401	0.37	+1.9
2,543,902	+		CCNA_02401	0.37	+1.9
2,543,902	+		CCNA_02401	0.37	+2.1
2,543,904	+		CCNA_02401	0.37	+1.3
2,543,910	-		CCNA_02401	0.38	+1.5
2,543,910	-		CCNA_02401	0.38	+0.7
2,543,910	-		CCNA_02401	0.38	+2.2
2,543,914	-		CCNA_02401	0.38	-1.9
2,543,926	-		CCNA_02401	0.39	-1.1
2,543,931	-		CCNA_02401	0.40	+0.9
2,543,970	+		CCNA_02401	0.44	+2.1
2,543,970	+		CCNA_02401	0.44	+1.4
2,543,978	-		CCNA_02401	0.44	-1.1
2,543,986	+		CCNA_02401	0.45	+1.1
2,543,996	+		CCNA_02401	0.46	+1.4
2,544,004	+		CCNA_02401	0.47	+0.4
2,544,010	-		CCNA_02401	0.47	+0.7
2,544,010	-		CCNA_02401	0.47	+0.2
2,544,012	-		CCNA_02401	0.48	-1.8
2,544,032	+		CCNA_02401	0.49	+1.9
2,544,145	+		CCNA_02401	0.60	+1.6
2,544,145	+		CCNA_02401	0.60	+1.8
2,544,167	+		CCNA_02401	0.62	+1.5
2,544,175	-		CCNA_02401	0.63	+0.9
2,544,180	+		CCNA_02401	0.64	+1.5
2,544,233	+		CCNA_02401	0.69	+1.5
2,544,233	+		CCNA_02401	0.69	+1.5
2,544,233	+		CCNA_02401	0.69	+1.5
2,544,241	-		CCNA_02401	0.69	-1.7
2,544,241	-		CCNA_02401	0.69	-0.8
2,544,330	+		CCNA_02401	0.78	+0.4
2,544,338	-		CCNA_02401	0.79	-0.8
2,544,338	-		CCNA_02401	0.79	-1.9
2,544,338	-		CCNA_02401	0.79	+0.5
2,544,348	-		CCNA_02401	0.79	-0.4
2,544,384	-		CCNA_02401	0.83	+2.0
2,544,397	+		CCNA_02401	0.84	+1.6
2,544,404	+		CCNA_02401	0.85	+0.5
2,544,405	-		CCNA_02401	0.85	+0.8
2,544,405	-		CCNA_02401	0.85	-0.2
2,544,412	-		CCNA_02401	0.86	-1.2
2,544,429	+		CCNA_02401	0.87	+2.2
2,544,492	-				+3.1
2,544,570	+				+0.4
2,544,577	-				-0.6
2,544,582	+				+0.0
2,544,590	-				+1.3
2,544,630	-				+1.6
2,544,679	-				+2.5
2,544,683	-				+0.6
2,544,683	-				+2.4
2,544,693	-				+2.4
2,544,716	+				-1.0
2,544,724	-				+1.1
2,544,725	+				+0.4
2,544,767	-		CCNA_02402	0.10	+2.2
2,544,799	+		CCNA_02402	0.12	+0.1
2,544,802	-		CCNA_02402	0.13	+0.2
2,544,802	-		CCNA_02402	0.13	+0.0
2,544,804	+		CCNA_02402	0.13	-0.1
2,544,804	+		CCNA_02402	0.13	+0.7
2,544,807	-		CCNA_02402	0.13	+1.1
2,544,813	+		CCNA_02402	0.13	+0.2
2,544,821	-		CCNA_02402	0.14	+1.6
2,544,844	+		CCNA_02402	0.15	-1.3
2,544,852	-		CCNA_02402	0.16	+2.0
2,544,874	-		CCNA_02402	0.17	-0.7
2,544,878	+		CCNA_02402	0.18	-0.6
2,544,884	+		CCNA_02402	0.18	+1.4
2,544,892	-		CCNA_02402	0.18	+0.7
2,544,892	-		CCNA_02402	0.18	+1.5
2,544,892	-		CCNA_02402	0.18	+1.0
2,544,913	+		CCNA_02402	0.20	+0.4
2,544,965	-		CCNA_02402	0.23	+0.6
2,544,965	-		CCNA_02402	0.23	+2.2
2,544,966	-		CCNA_02402	0.23	+1.2
2,544,976	-		CCNA_02402	0.24	+2.6
2,544,985	+		CCNA_02402	0.24	-0.8
2,545,023	+		CCNA_02402	0.27	+2.8
2,545,031	+		CCNA_02402	0.27	+0.4
2,545,043	-		CCNA_02402	0.28	+2.4
2,545,050	-		CCNA_02402	0.29	+2.1
2,545,058	-		CCNA_02402	0.29	+0.3
2,545,075	-		CCNA_02402	0.30	+1.9
2,545,107	-		CCNA_02402	0.32	+1.3
2,545,108	-		CCNA_02402	0.32	+2.1
2,545,108	-		CCNA_02402	0.32	+1.2
2,545,108	-		CCNA_02402	0.32	+1.7
2,545,190	+		CCNA_02402	0.38	-0.4
2,545,198	-		CCNA_02402	0.38	+3.4
2,545,210	-		CCNA_02402	0.39	+0.5
2,545,248	+		CCNA_02402	0.41	-0.0
2,545,249	-		CCNA_02402	0.42	-0.2
2,545,269	+		CCNA_02402	0.43	-1.6
2,545,270	-		CCNA_02402	0.43	+0.2
2,545,281	-		CCNA_02402	0.44	+1.3
2,545,301	+		CCNA_02402	0.45	-1.1
2,545,301	+		CCNA_02402	0.45	+0.4
2,545,309	-		CCNA_02402	0.45	-0.1
2,545,309	-		CCNA_02402	0.45	+0.4
2,545,309	-		CCNA_02402	0.45	+1.3
2,545,318	+		CCNA_02402	0.46	-0.2
2,545,321	-		CCNA_02402	0.46	+0.8
2,545,335	+		CCNA_02402	0.47	+2.4
2,545,347	+		CCNA_02402	0.48	-0.9
2,545,347	+		CCNA_02402	0.48	+0.0
2,545,355	-		CCNA_02402	0.48	-0.3
2,545,355	-		CCNA_02402	0.48	+0.5
2,545,426	+		CCNA_02402	0.53	+1.8
2,545,465	+		CCNA_02402	0.56	+1.4
2,545,470	+		CCNA_02402	0.56	+0.7
2,545,470	+		CCNA_02402	0.56	+1.3
2,545,475	+		CCNA_02402	0.56	-0.8
2,545,475	+		CCNA_02402	0.56	+2.4
2,545,483	-		CCNA_02402	0.57	+1.2
2,545,483	-		CCNA_02402	0.57	-0.8
2,545,483	-		CCNA_02402	0.57	+1.3
2,545,485	+		CCNA_02402	0.57	-0.7
2,545,504	-		CCNA_02402	0.58	+0.0
2,545,515	-		CCNA_02402	0.59	+1.6
2,545,529	+		CCNA_02402	0.60	-0.6
2,545,529	+		CCNA_02402	0.60	+0.9
2,545,537	-		CCNA_02402	0.60	+1.5
2,545,537	-		CCNA_02402	0.60	+1.4
2,545,537	-		CCNA_02402	0.60	+1.2