Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02273

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,424,008	-		CCNA_02271	0.22	-1.3
2,424,030	-		CCNA_02271	0.25	+1.5
2,424,049	-		CCNA_02271	0.27	-0.4
2,424,094	+		CCNA_02271	0.33	+0.0
2,424,100	+				+3.9
2,424,102	+		CCNA_02271	0.34	-0.7
2,424,110	-		CCNA_02271	0.35	+1.6
2,424,190	+		CCNA_02271	0.45	+0.9
2,424,197	+		CCNA_02271	0.46	+0.9
2,424,205	-		CCNA_02271	0.47	+0.9
2,424,260	+		CCNA_02271	0.54	+0.3
2,424,262	+		CCNA_02271	0.55	+0.4
2,424,268	-		CCNA_02271	0.55	-0.5
2,424,282	+		CCNA_02271	0.57	-0.6
2,424,290	-		CCNA_02271	0.58	-1.8
2,424,290	-		CCNA_02271	0.58	-1.2
2,424,321	-		CCNA_02271	0.62	-0.3
2,424,336	+		CCNA_02271	0.64	-0.1
2,424,413	+		CCNA_02271	0.74	-1.5
2,424,415	-		CCNA_02271	0.74	-0.6
2,424,443	-		CCNA_02271	0.78	-1.1
2,424,534	-		CCNA_02271	0.89	+0.9
2,424,554	-				+0.6
2,424,569	+				-1.9
2,424,569	+				+1.0
2,424,577	-				+0.4
2,424,607	+				+0.9
2,424,661	+				+0.5
2,424,693	-				+0.3
2,424,704	-				-1.1
2,424,717	-		CCNA_02272	0.12	+0.1
2,424,755	-		CCNA_02272	0.28	+1.3
2,424,755	-		CCNA_02272	0.28	+2.0
2,424,778	-		CCNA_02272	0.37	+2.2
2,424,788	-		CCNA_02272	0.42	+2.2
2,424,793	+		CCNA_02272	0.44	-1.2
2,424,797	+		CCNA_02272	0.45	+1.9
2,424,805	-		CCNA_02272	0.49	+0.7
2,424,805	-		CCNA_02272	0.49	+0.1
2,424,821	-		CCNA_02272	0.55	+0.6
2,424,876	+		CCNA_02272	0.78	-0.2
2,424,876	+		CCNA_02272	0.78	-1.3
2,424,884	-		CCNA_02272	0.81	+1.7
2,424,886	+		CCNA_02272	0.82	-0.7
2,424,904	-		CCNA_02272	0.89	+2.6
2,424,975	-				+3.7
2,424,999	-		CCNA_02273	0.14	+2.2
2,425,019	-		CCNA_02273	0.22	+2.1
2,425,033	-		CCNA_02273	0.28	+2.1
2,425,084	+		CCNA_02273	0.48	-1.5
2,425,100	-		CCNA_02273	0.55	+1.9
2,425,110	-		CCNA_02273	0.59	+2.7
2,425,166	+		CCNA_02273	0.81	+0.3
2,425,189	-				+1.0
2,425,206	+				+0.8
2,425,208	+				-0.3
2,425,214	+				+0.9
2,425,214	+				+0.4
2,425,237	+				-0.7
2,425,248	+				-1.1
2,425,255	-				+0.7
2,425,256	-				+1.1
2,425,256	-				+0.7
2,425,256	-				+0.0
2,425,256	-				+0.1
2,425,292	-				-0.6
2,425,325	+				-0.2
2,425,330	-				+1.5
2,425,335	+				+0.6
2,425,335	+				-0.1
2,425,343	-				-0.3
2,425,362	-				+1.8
2,425,398	-		CCNA_02274	0.12	+0.5
2,425,443	-		CCNA_02274	0.22	-0.9
2,425,520	+		CCNA_02274	0.37	-0.2
2,425,533	-		CCNA_02274	0.40	-0.3
2,425,552	+		CCNA_02274	0.44	-1.1
2,425,558	+		CCNA_02274	0.45	+0.4
2,425,566	-		CCNA_02274	0.47	+0.1
2,425,576	+		CCNA_02274	0.49	+0.5
2,425,576	+		CCNA_02274	0.49	+0.5
2,425,576	+		CCNA_02274	0.49	-1.1
2,425,576	+		CCNA_02274	0.49	-0.3
2,425,576	+		CCNA_02274	0.49	-0.1
2,425,576	+		CCNA_02274	0.49	+1.6
2,425,576	+		CCNA_02274	0.49	-1.9
2,425,584	-		CCNA_02274	0.51	+0.5
2,425,600	+		CCNA_02274	0.54	-1.5
2,425,600	+		CCNA_02274	0.54	+1.1
2,425,615	+		CCNA_02274	0.57	-2.7
2,425,629	-		CCNA_02274	0.60	-0.7
2,425,635	-		CCNA_02274	0.61	-0.5
2,425,674	-		CCNA_02274	0.69	-1.0
2,425,698	-		CCNA_02274	0.74	+0.4
2,425,708	-		CCNA_02274	0.76	-2.5
2,425,744	-		CCNA_02274	0.84	+0.1
2,425,748	-		CCNA_02274	0.84	+0.5
2,425,759	+		CCNA_02274	0.87	-0.6
2,425,782	+				+0.3
2,425,790	-				-0.3
2,425,790	-				+1.8
2,425,790	-				-1.6
2,425,790	-				-0.7
2,425,790	-				-0.8
2,425,790	-				-1.7
2,425,790	-				-0.4
2,425,795	-				-2.7
2,425,838	+				+0.0
2,425,856	+				+1.7
2,425,856	+				+0.5
2,425,856	+				-0.9
2,425,856	+				-1.7
2,425,870	+				+1.5
2,425,878	-				+0.2
2,425,907	+		CCNA_02275	0.11	-0.6
2,425,961	+		CCNA_02275	0.18	+1.7
2,425,983	+		CCNA_02275	0.21	-0.1
2,425,995	+		CCNA_02275	0.22	-0.1
2,425,995	+		CCNA_02275	0.22	+0.9
2,426,005	+		CCNA_02275	0.24	-1.6
2,426,008	-		CCNA_02275	0.24	+0.5
2,426,015	+		CCNA_02275	0.25	+0.5
2,426,015	+		CCNA_02275	0.25	+0.2
2,426,023	-		CCNA_02275	0.26	-0.5
2,426,030	-		CCNA_02275	0.27	-0.4
2,426,062	-		CCNA_02275	0.31	-0.5
2,426,112	+		CCNA_02275	0.37	-1.0
2,426,120	+		CCNA_02275	0.38	-0.3
2,426,120	+		CCNA_02275	0.38	+0.8
2,426,120	+		CCNA_02275	0.38	-1.0
2,426,128	-		CCNA_02275	0.39	-1.2
2,426,135	-		CCNA_02275	0.40	-1.4
2,426,176	+		CCNA_02275	0.45	+1.4
2,426,183	-		CCNA_02275	0.46	+0.5
2,426,191	+		CCNA_02275	0.47	-0.7
2,426,192	+		CCNA_02275	0.47	+0.5
2,426,199	-		CCNA_02275	0.48	+0.2
2,426,199	-		CCNA_02275	0.48	+0.8
2,426,199	-		CCNA_02275	0.48	+1.7