Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02269

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,421,008	+		CCNA_02268	0.11	-2.8
2,421,055	+		CCNA_02268	0.18	+0.1
2,421,077	-		CCNA_02268	0.21	+2.0
2,421,091	+		CCNA_02268	0.24	-0.8
2,421,092	+		CCNA_02268	0.24	+1.8
2,421,094	-		CCNA_02268	0.24	-1.0
2,421,100	-		CCNA_02268	0.25	+0.3
2,421,125	+		CCNA_02268	0.29	-0.3
2,421,132	-		CCNA_02268	0.30	-1.5
2,421,139	+		CCNA_02268	0.31	-1.9
2,421,147	-		CCNA_02268	0.32	+1.4
2,421,147	-		CCNA_02268	0.32	+0.1
2,421,147	-		CCNA_02268	0.32	-0.8
2,421,147	-		CCNA_02268	0.32	-2.3
2,421,147	-		CCNA_02268	0.32	+0.1
2,421,147	-		CCNA_02268	0.32	+0.1
2,421,149	+		CCNA_02268	0.33	+0.1
2,421,150	+		CCNA_02268	0.33	-0.4
2,421,157	-		CCNA_02268	0.34	-1.3
2,421,160	+		CCNA_02268	0.34	-0.0
2,421,210	-		CCNA_02268	0.42	+0.5
2,421,221	-		CCNA_02268	0.44	-1.7
2,421,226	-		CCNA_02268	0.44	+0.0
2,421,229	+		CCNA_02268	0.45	-0.8
2,421,236	+		CCNA_02268	0.46	-1.6
2,421,236	+		CCNA_02268	0.46	-1.2
2,421,236	+		CCNA_02268	0.46	-2.1
2,421,236	+		CCNA_02268	0.46	+1.1
2,421,236	+		CCNA_02268	0.46	-1.5
2,421,236	+				+1.4
2,421,236	+		CCNA_02268	0.46	+0.0
2,421,237	-		CCNA_02268	0.46	+0.2
2,421,249	-		CCNA_02268	0.48	-0.2
2,421,249	-		CCNA_02268	0.48	-1.5
2,421,249	-		CCNA_02268	0.48	+0.1
2,421,278	-		CCNA_02268	0.52	+1.4
2,421,321	+		CCNA_02268	0.59	+0.3
2,421,384	+		CCNA_02268	0.69	+1.4
2,421,410	-		CCNA_02268	0.73	-1.0
2,421,447	-		CCNA_02268	0.79	+0.4
2,421,454	+		CCNA_02268	0.80	+0.5
2,421,454	+		CCNA_02268	0.80	-0.5
2,421,462	-		CCNA_02268	0.81	-1.7
2,421,474	+		CCNA_02268	0.83	-3.0
2,421,499	-		CCNA_02268	0.87	-0.1
2,421,505	-		CCNA_02268	0.88	-0.4
2,421,541	-				-0.5
2,421,549	-				-0.3
2,421,554	-				+3.0
2,421,565	-				+0.0
2,421,586	+				-1.8
2,421,586	+				+1.0
2,421,652	+				-1.1
2,421,660	-				-0.1
2,421,660	-				-2.9
2,421,660	-				+2.0
2,421,681	-				-0.6
2,421,703	-				-0.1
2,421,895	-				+2.4
2,421,956	+				+0.1
2,421,956	+				-2.0
2,421,956	+				+0.7
2,421,956	+				+0.7
2,421,956	+				+0.5
2,421,956	+				+0.8
2,421,964	-				+0.1
2,421,964	-				-0.9
2,421,988	+				-1.5
2,421,988	+				-0.4
2,421,993	+				-0.8
2,422,001	-				+0.6
2,422,002	+				+0.1
2,422,034	+				-0.2
2,422,037	-				-1.3
2,422,037	-				-1.4
2,422,037	-				-0.8
2,422,051	+				-0.2
2,422,079	+				-0.5
2,422,089	+		CCNA_02269	0.10	-0.4
2,422,089	+		CCNA_02269	0.10	-1.1
2,422,096	+		CCNA_02269	0.11	+0.1
2,422,096	+		CCNA_02269	0.11	-1.6
2,422,104	-		CCNA_02269	0.12	-2.0
2,422,104	-		CCNA_02269	0.12	+0.1
2,422,104	-		CCNA_02269	0.12	-0.6
2,422,118	-		CCNA_02269	0.13	+0.1
2,422,131	+		CCNA_02269	0.15	+0.2
2,422,171	-		CCNA_02269	0.19	-0.5
2,422,243	+		CCNA_02269	0.26	-2.1
2,422,245	+		CCNA_02269	0.26	-2.1
2,422,251	-		CCNA_02269	0.27	+0.3
2,422,252	-		CCNA_02269	0.27	-0.2
2,422,252	-		CCNA_02269	0.27	-2.5
2,422,263	-		CCNA_02269	0.28	-0.9
2,422,263	-		CCNA_02269	0.28	-0.1
2,422,271	+		CCNA_02269	0.29	-1.0
2,422,354	+		CCNA_02269	0.37	-3.1
2,422,412	+		CCNA_02269	0.43	+0.5
2,422,438	-		CCNA_02269	0.46	+0.1
2,422,458	+		CCNA_02269	0.48	-1.4
2,422,479	+		CCNA_02269	0.50	-0.4
2,422,490	+		CCNA_02269	0.51	-1.2
2,422,519	-		CCNA_02269	0.54	-2.6
2,422,531	+		CCNA_02269	0.55	-0.9
2,422,579	+		CCNA_02269	0.60	+0.2
2,422,594	+		CCNA_02269	0.61	-1.5
2,422,643	-		CCNA_02269	0.66	-0.2
2,422,717	-		CCNA_02269	0.74	-1.4
2,422,717	-		CCNA_02269	0.74	-0.1
2,422,728	-		CCNA_02269	0.75	+2.1
2,422,740	-		CCNA_02269	0.76	+1.1
2,422,754	+		CCNA_02269	0.77	+1.6
2,422,775	+		CCNA_02269	0.79	-2.2
2,422,797	-		CCNA_02269	0.82	+0.8
2,422,799	+		CCNA_02269	0.82	+0.4
2,422,817	+		CCNA_02269	0.84	-0.1
2,422,885	-				+0.2
2,422,908	+				+0.4
2,422,952	+				+0.4
2,422,952	+				+0.1
2,422,960	-				-0.9
2,423,012	+				-0.4
2,423,056	+				+1.0
2,423,057	+				-2.6
2,423,070	+				-0.8
2,423,071	+				+0.9
2,423,093	+				-0.2
2,423,101	-				-2.2
2,423,101	-				-0.4
2,423,222	-		CCNA_02270	0.25	+0.4
2,423,301	-		CCNA_02270	0.40	+3.4
2,423,346	-		CCNA_02270	0.49	-1.2
2,423,359	+		CCNA_02270	0.52	-0.6
2,423,367	-		CCNA_02270	0.53	+1.4
2,423,391	+		CCNA_02270	0.58	+1.6
2,423,399	-		CCNA_02270	0.59	-0.0
2,423,399	-		CCNA_02270	0.59	-1.5
2,423,409	-		CCNA_02270	0.61	-1.3
2,423,450	+		CCNA_02270	0.69	+0.1
2,423,498	-		CCNA_02270	0.79	-0.1
2,423,580	-				-1.5
2,423,585	-				-0.5
2,423,601	+				-1.2
2,423,606	+				+0.4
2,423,606	-				+1.7
2,423,615	-				+0.9
2,423,621	-				+0.6
2,423,668	+				+3.2
2,423,685	+				-1.1
2,423,690	+				-1.1
2,423,698	-				-0.4
2,423,709	-				-1.7
2,423,715	+				-2.7
2,423,723	-				+0.7
2,423,754	+				-1.9
2,423,814	-				+1.2
2,423,871	+				-0.8
2,423,871	+				-0.4
2,423,879	-				+0.2
2,423,879	-				+0.0
2,423,887	-				+0.8