Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02260

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,410,087	+				+0.6
2,410,099	+				-1.5
2,410,107	-				+1.4
2,410,113	+				+0.5
2,410,121	-				-0.9
2,410,121	-				-0.0
2,410,127	+				-0.2
2,410,165	+				+0.9
2,410,168	-				-0.2
2,410,173	-				+0.2
2,410,173	-				-1.9
2,410,177	+				+2.0
2,410,184	+				-0.0
2,410,203	+				+0.3
2,410,203	+				-0.2
2,410,206	-				-1.6
2,410,211	-		CCNA_02259	0.10	+1.0
2,410,211	-		CCNA_02259	0.10	-0.8
2,410,216	-		CCNA_02259	0.11	-1.6
2,410,216	-		CCNA_02259	0.11	-2.0
2,410,223	-		CCNA_02259	0.12	-0.1
2,410,246	+		CCNA_02259	0.16	-0.9
2,410,302	-		CCNA_02259	0.26	-2.3
2,410,340	-		CCNA_02259	0.33	-0.3
2,410,487	-		CCNA_02259	0.59	+0.3
2,410,487	-		CCNA_02259	0.59	-0.2
2,410,487	-		CCNA_02259	0.59	+1.0
2,410,487	-		CCNA_02259	0.59	-0.9
2,410,487	-		CCNA_02259	0.59	-0.1
2,410,487	-		CCNA_02259	0.59	+0.6
2,410,805	-				+0.9
2,410,805	-				+2.0
2,410,826	-				+1.3
2,410,827	-				+1.5
2,410,867	-				+1.2
2,410,882	+				-0.8
2,410,882	+				-0.4
2,410,890	-				+1.2
2,410,890	-				+2.0
2,410,890	-				+1.6
2,410,890	-				+1.5
2,410,898	+				+0.7
2,410,948	+				+0.4
2,410,949	+				+0.9
2,410,991	+		CCNA_02260	0.16	+0.1
2,411,046	+		CCNA_02260	0.30	+0.8
2,411,068	-		CCNA_02260	0.35	+1.8
2,411,097	+		CCNA_02260	0.42	+0.6
2,411,128	+		CCNA_02260	0.50	-0.4
2,411,138	+		CCNA_02260	0.52	-0.2
2,411,183	+		CCNA_02260	0.63	-1.2
2,411,201	-		CCNA_02260	0.68	+2.1
2,411,338	-				+1.9
2,411,367	+				-1.5
2,411,375	-				+1.0
2,411,375	-				-0.4
2,411,375	-				+1.0
2,411,375	-				+0.7
2,411,375	-				+2.3
2,411,431	+				-0.5
2,411,440	-				+3.1
2,411,475	+				+3.2
2,411,480	+				-0.2
2,411,480	+				-0.2
2,411,516	-				+0.4
2,411,620	+		CCNA_02261	0.10	-0.4
2,411,620	+		CCNA_02261	0.10	+0.2
2,411,628	-		CCNA_02261	0.11	+0.5
2,411,628	-		CCNA_02261	0.11	+2.1
2,411,628	-		CCNA_02261	0.11	+2.0
2,411,628	-		CCNA_02261	0.11	-0.7
2,411,628	-		CCNA_02261	0.11	+0.6
2,411,690	-		CCNA_02261	0.14	+2.4
2,411,690	-		CCNA_02261	0.14	+0.1
2,411,699	+		CCNA_02261	0.14	-0.8
2,411,699	+		CCNA_02261	0.14	-1.4
2,411,707	-		CCNA_02261	0.15	+0.5
2,411,746	-		CCNA_02261	0.17	+0.1
2,411,757	+		CCNA_02261	0.17	+1.0
2,411,757	+		CCNA_02261	0.17	+0.4
2,411,781	+		CCNA_02261	0.18	-0.9
2,411,781	+		CCNA_02261	0.18	-0.6
2,411,781	+		CCNA_02261	0.18	-1.4
2,411,781	+		CCNA_02261	0.18	-0.7
2,411,781	+		CCNA_02261	0.18	-0.1
2,411,781	+		CCNA_02261	0.18	+0.1
2,411,781	+		CCNA_02261	0.18	-1.8
2,411,789	-		CCNA_02261	0.19	-0.3
2,411,789	-		CCNA_02261	0.19	+0.8
2,411,789	-		CCNA_02261	0.19	+1.8
2,411,789	-		CCNA_02261	0.19	+1.2
2,411,789	-		CCNA_02261	0.19	-0.3
2,411,789	-		CCNA_02261	0.19	-1.4
2,411,789	-		CCNA_02261	0.19	+0.2
2,411,789	-		CCNA_02261	0.19	+1.1
2,411,789	-		CCNA_02261	0.19	+1.1
2,411,789	-		CCNA_02261	0.19	+0.9
2,411,811	-		CCNA_02261	0.20	-1.3
2,411,860	+		CCNA_02261	0.22	-0.2
2,411,865	+		CCNA_02261	0.22	-0.0
2,411,883	+		CCNA_02261	0.23	-0.7
2,411,917	+		CCNA_02261	0.25	-1.9
2,411,947	+		CCNA_02261	0.27	-2.0
2,411,971	+		CCNA_02261	0.28	-1.7
2,411,976	+		CCNA_02261	0.28	-2.2
2,411,984	-		CCNA_02261	0.28	+1.1
2,411,995	-		CCNA_02261	0.29	+0.4
2,412,007	-		CCNA_02261	0.30	+1.2
2,412,064	+		CCNA_02261	0.32	-2.7
2,412,147	-		CCNA_02261	0.36	+0.0
2,412,148	+		CCNA_02261	0.37	-1.0
2,412,151	-		CCNA_02261	0.37	+1.3
2,412,151	-		CCNA_02261	0.37	-0.9
2,412,190	+		CCNA_02261	0.39	+0.3
2,412,233	-		CCNA_02261	0.41	-0.0
2,412,309	-		CCNA_02261	0.45	+0.6
2,412,309	-		CCNA_02261	0.45	-0.4
2,412,309	-		CCNA_02261	0.45	+1.6
2,412,325	+		CCNA_02261	0.45	-0.3