Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02242

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,390,130	+		CCNA_02240	0.54	-1.2
2,390,160	-		CCNA_02240	0.58	-1.2
2,390,170	+		CCNA_02240	0.59	-0.5
2,390,178	-		CCNA_02240	0.60	+0.7
2,390,187	-		CCNA_02240	0.61	-0.2
2,390,222	-		CCNA_02240	0.66	+1.5
2,390,271	-		CCNA_02240	0.72	-0.2
2,390,330	+		CCNA_02240	0.80	-0.7
2,390,330	+		CCNA_02240	0.80	-1.9
2,390,400	-		CCNA_02240	0.89	-0.5
2,390,430	-				+0.2
2,390,444	+				-1.7
2,390,460	-				+1.1
2,390,490	-				+0.9
2,390,523	+				-0.1
2,390,535	+		CCNA_02241	0.11	-0.5
2,390,592	+		CCNA_02241	0.23	-0.1
2,390,605	-		CCNA_02241	0.26	-1.1
2,390,649	-		CCNA_02241	0.35	+2.2
2,390,682	-		CCNA_02241	0.42	+0.3
2,390,718	-		CCNA_02241	0.50	-0.1
2,390,737	+		CCNA_02241	0.54	+3.1
2,390,737	-		CCNA_02241	0.54	-0.3
2,390,737	-		CCNA_02241	0.54	-0.6
2,390,756	+		CCNA_02241	0.58	+1.9
2,390,762	-		CCNA_02241	0.59	-1.0
2,390,802	-		CCNA_02241	0.68	-1.3
2,390,856	-		CCNA_02241	0.79	-0.6
2,390,925	-				+0.1
2,390,928	+				-0.8
2,390,928	+				+0.3
2,390,930	+				-1.1
2,390,962	+				+0.2
2,390,980	-				+0.7
2,390,980	-				+0.9
2,391,005	+				+0.1
2,391,005	+				-0.8
2,391,013	-				-1.0
2,391,029	-				-0.4
2,391,052	+				-1.0
2,391,061	-				+2.0
2,391,081	+				-1.4
2,391,117	+				-0.4
2,391,120	-				+3.9
2,391,120	-				+4.0
2,391,122	+				-0.2
2,391,125	-				+4.0
2,391,125	-				+3.9
2,391,144	-				+3.9
2,391,164	+				+1.7
2,391,165	-				+4.0
2,391,165	-				+3.9
2,391,165	-				+3.8
2,391,197	-		CCNA_02242	0.16	+3.9
2,391,252	-		CCNA_02242	0.29	+2.4
2,391,264	-		CCNA_02242	0.32	+1.9
2,391,279	-		CCNA_02242	0.35	+3.1
2,391,286	-		CCNA_02242	0.37	+3.1
2,391,358	-		CCNA_02242	0.53	+2.8
2,391,393	-		CCNA_02242	0.61	+3.1
2,391,455	-		CCNA_02242	0.76	+3.2
2,391,462	-		CCNA_02242	0.77	+2.9
2,391,500	-		CCNA_02242	0.86	+2.9
2,391,522	-				+3.0
2,391,522	-				+2.2
2,391,522	-				+1.8
2,391,524	-				+3.0
2,391,532	-				+2.2
2,391,543	-				+2.2
2,391,564	-				+2.3
2,391,564	-				+2.9
2,391,568	+				+0.1
2,391,663	-				+3.5
2,391,698	-				-0.6
2,391,764	-				+0.4
2,391,769	-				-1.6
2,391,817	+				+2.3
2,391,825	-				-0.9
2,391,857	+				+3.7
2,391,867	+				+3.4
2,391,868	+				+3.4
2,391,876	-				+0.8
2,391,902	+				+3.2
2,391,908	+				+4.3
2,391,908	+				+4.6
2,391,908	+				+3.4
2,391,910	-				+1.4
2,391,938	+				+4.6
2,391,976	-		CCNA_02243	0.12	+0.7
2,391,981	+		CCNA_02243	0.13	+3.4
2,391,989	-		CCNA_02243	0.13	+1.1
2,391,989	-		CCNA_02243	0.13	-0.5
2,391,989	-		CCNA_02243	0.13	-0.1
2,391,989	-		CCNA_02243	0.13	+2.8
2,391,994	-		CCNA_02243	0.14	-0.2
2,392,025	+		CCNA_02243	0.16	+3.7
2,392,050	+		CCNA_02243	0.18	+3.5
2,392,050	+		CCNA_02243	0.18	+3.6
2,392,056	-		CCNA_02243	0.18	+1.0
2,392,058	-		CCNA_02243	0.18	+1.0
2,392,060	+		CCNA_02243	0.19	+3.6
2,392,060	+		CCNA_02243	0.19	+3.8
2,392,084	+		CCNA_02243	0.20	+4.4
2,392,084	+		CCNA_02243	0.20	+4.0
2,392,084	+		CCNA_02243	0.20	+4.1
2,392,084	+		CCNA_02243	0.20	+4.4
2,392,084	+		CCNA_02243	0.20	+4.2
2,392,092	-		CCNA_02243	0.21	+0.0
2,392,092	-		CCNA_02243	0.21	-0.8
2,392,100	-		CCNA_02243	0.21	+0.9
2,392,104	+		CCNA_02243	0.22	+3.8
2,392,112	-		CCNA_02243	0.22	-2.3
2,392,206	-		CCNA_02243	0.29	+0.3
2,392,210	+		CCNA_02243	0.30	+4.3
2,392,316	+		CCNA_02243	0.37	+4.2
2,392,324	-		CCNA_02243	0.38	+0.3
2,392,324	-		CCNA_02243	0.38	+2.2
2,392,335	+		CCNA_02243	0.39	+4.2
2,392,335	+		CCNA_02243	0.39	+4.5
2,392,343	-		CCNA_02243	0.39	+1.5
2,392,343	-		CCNA_02243	0.39	+0.8
2,392,359	-		CCNA_02243	0.41	+1.3
2,392,372	+		CCNA_02243	0.42	+4.2
2,392,374	+		CCNA_02243	0.42	+4.4
2,392,374	+		CCNA_02243	0.42	+3.5
2,392,382	-				+4.0
2,392,382	-		CCNA_02243	0.42	+0.1
2,392,459	+		CCNA_02243	0.48	+3.6
2,392,459	+		CCNA_02243	0.48	+4.5
2,392,467	-		CCNA_02243	0.49	-0.5
2,392,514	+		CCNA_02243	0.52	+3.9
2,392,514	+		CCNA_02243	0.52	+4.0
2,392,514	+		CCNA_02243	0.52	+4.2
2,392,522	-		CCNA_02243	0.53	+0.8
2,392,536	+		CCNA_02243	0.54	+4.7
2,392,546	+		CCNA_02243	0.54	+4.4
2,392,546	+		CCNA_02243	0.54	+4.4