Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02188

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,338,638	+				+0.0
2,338,638	+				+2.5
2,338,825	+				+0.8
2,338,877	-				-1.0
2,338,877	-				-1.6
2,338,904	-				-2.4
2,338,979	+				+3.0
2,338,987	-				-1.5
2,339,088	+				+1.5
2,339,092	+				+1.7
2,339,138	+				+2.0
2,339,218	+		CCNA_02187	0.26	+2.7
2,339,229	-		CCNA_02187	0.28	+0.6
2,339,312	+		CCNA_02187	0.45	+0.4
2,339,312	+		CCNA_02187	0.45	+2.5
2,339,320	-		CCNA_02187	0.47	+0.5
2,339,357	+		CCNA_02187	0.55	+1.4
2,339,366	-		CCNA_02187	0.56	-0.1
2,339,377	+		CCNA_02187	0.59	+2.5
2,339,377	+		CCNA_02187	0.59	+1.1
2,339,377	+		CCNA_02187	0.59	+2.4
2,339,395	+		CCNA_02187	0.62	+1.8
2,339,395	+		CCNA_02187	0.62	+1.6
2,339,395	+		CCNA_02187	0.62	+2.1
2,339,395	+		CCNA_02187	0.62	+2.7
2,339,395	+		CCNA_02187	0.62	+2.9
2,339,403	-		CCNA_02187	0.64	-0.9
2,339,403	-		CCNA_02187	0.64	-0.4
2,339,403	-				+1.7
2,339,475	-		CCNA_02187	0.79	-0.2
2,339,503	+		CCNA_02187	0.84	+2.2
2,339,511	-		CCNA_02187	0.86	-0.5
2,339,553	+				+2.3
2,339,588	+				+2.2
2,339,641	-		CCNA_02188	0.14	-0.2
2,339,678	+		CCNA_02188	0.22	+1.4
2,339,678	+		CCNA_02188	0.22	+1.3
2,339,686	-		CCNA_02188	0.23	+1.0
2,339,726	+		CCNA_02188	0.32	+0.5
2,339,743	+		CCNA_02188	0.35	+1.5
2,339,746	-		CCNA_02188	0.36	-0.4
2,339,764	+		CCNA_02188	0.40	+2.7
2,339,764	+		CCNA_02188	0.40	+1.6
2,339,777	-		CCNA_02188	0.43	-0.6
2,339,780	+		CCNA_02188	0.43	+2.8
2,339,784	+		CCNA_02188	0.44	+1.5
2,339,797	-		CCNA_02188	0.47	-0.3
2,339,805	+		CCNA_02188	0.49	+2.3
2,339,810	+		CCNA_02188	0.50	+1.1
2,339,831	+		CCNA_02188	0.54	+1.5
2,339,851	+		CCNA_02188	0.58	+1.2
2,339,912	+		CCNA_02188	0.71	+2.5
2,339,920	-		CCNA_02188	0.73	-0.1
2,339,948	+		CCNA_02188	0.79	+0.8
2,339,956	-		CCNA_02188	0.80	-1.9
2,339,975	-		CCNA_02188	0.84	-1.4
2,339,997	+		CCNA_02188	0.89	+1.4
2,340,050	-				+0.5
2,340,179	+		CCNA_02189	0.16	-0.9
2,340,181	+		CCNA_02189	0.16	-0.0
2,340,189	-		CCNA_02189	0.17	-0.8
2,340,197	-		CCNA_02189	0.18	-0.1
2,340,208	-		CCNA_02189	0.20	-0.0
2,340,215	+		CCNA_02189	0.21	-1.2
2,340,232	+		CCNA_02189	0.23	-1.8
2,340,248	+		CCNA_02189	0.25	+0.6
2,340,249	+		CCNA_02189	0.25	-0.6
2,340,257	-		CCNA_02189	0.26	-0.0
2,340,271	+		CCNA_02189	0.28	+0.1
2,340,399	+		CCNA_02189	0.44	-0.7
2,340,417	+		CCNA_02189	0.47	+0.7
2,340,490	+		CCNA_02189	0.56	-0.4
2,340,498	-		CCNA_02189	0.57	-1.9
2,340,549	+		CCNA_02189	0.64	+2.4
2,340,558	+		CCNA_02189	0.65	-0.4
2,340,600	+		CCNA_02189	0.70	+1.5
2,340,689	+		CCNA_02189	0.82	-0.5
2,340,692	+		CCNA_02189	0.82	+0.9
2,340,697	+		CCNA_02189	0.83	-0.8
2,340,697	+		CCNA_02189	0.83	+1.0
2,340,705	-		CCNA_02189	0.84	-0.4
2,340,705	-		CCNA_02189	0.84	+2.2
2,340,722	-		CCNA_02189	0.86	-0.5
2,340,722	-		CCNA_02189	0.86	-0.4
2,340,754	+				-0.5
2,340,754	+				+0.1
2,340,762	-				-0.6
2,340,762	-				-1.7
2,340,762	-				-0.0
2,340,762	-				-1.0
2,340,765	+				-0.4
2,340,765	+				-0.8
2,340,765	+				-1.5
2,340,765	+				-0.8
2,340,765	+				-1.5
2,340,765	+				-1.2
2,340,773	-				+0.3
2,340,773	-				-0.9
2,340,773	-				+1.7
2,340,773	-				+0.3
2,340,791	-				+0.5
2,340,798	+				+2.0
2,340,805	-				+1.9
2,340,841	+				+1.0
2,340,841	+				-1.2
2,340,848	+				+3.6
2,340,849	-				+0.5
2,340,849	-				-1.4
2,340,867	+				+0.7
2,340,874	+				+1.0
2,340,874	+				+0.5
2,340,882	-				+0.9
2,340,898	+				+0.0
2,340,936	+				+0.9
2,340,951	+				+1.0
2,340,955	-				+0.7
2,340,956	+				+0.6