Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02178

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,328,003	-		CCNA_02175	0.24	-1.0
2,328,015	-		CCNA_02175	0.26	-1.4
2,328,167	+		CCNA_02175	0.55	+0.8
2,328,189	+		CCNA_02175	0.59	+0.2
2,328,189	+		CCNA_02175	0.59	-0.6
2,328,189	+		CCNA_02175	0.59	-1.4
2,328,197	-		CCNA_02175	0.61	-1.0
2,328,197	-		CCNA_02175	0.61	-1.7
2,328,197	-		CCNA_02175	0.61	+0.2
2,328,238	+		CCNA_02175	0.69	+0.5
2,328,255	-		CCNA_02175	0.72	+1.2
2,328,328	-		CCNA_02175	0.86	+1.0
2,328,379	-				-1.1
2,328,402	-				+1.7
2,328,519	+		CCNA_02176	0.54	-0.4
2,328,541	-		CCNA_02176	0.66	-0.5
2,328,685	-				+0.8
2,328,685	-				-0.2
2,328,701	-				-1.4
2,328,754	+		CCNA_02177	0.28	-0.3
2,328,887	-		CCNA_02177	0.80	-1.0
2,328,931	+				+0.4
2,328,939	-				-0.0
2,328,941	+				+4.3
2,328,962	-				+0.1
2,329,045	+				+0.1
2,329,070	-				+0.9
2,329,074	+				-0.8
2,329,082	-				-0.4
2,329,123	-		CCNA_02178	0.13	-1.2
2,329,165	+		CCNA_02178	0.18	+0.9
2,329,168	-		CCNA_02178	0.18	-1.0
2,329,180	+		CCNA_02178	0.20	+0.7
2,329,244	+		CCNA_02178	0.27	+0.4
2,329,269	-		CCNA_02178	0.30	+2.4
2,329,280	-		CCNA_02178	0.31	-0.2
2,329,280	-		CCNA_02178	0.31	-2.8
2,329,280	-		CCNA_02178	0.31	+0.2
2,329,311	-		CCNA_02178	0.34	-0.3
2,329,330	+		CCNA_02178	0.36	+1.4
2,329,360	+		CCNA_02178	0.40	+2.1
2,329,360	+		CCNA_02178	0.40	+0.7
2,329,368	-		CCNA_02178	0.41	-0.1
2,329,377	-		CCNA_02178	0.42	-2.5
2,329,378	+		CCNA_02178	0.42	-1.2
2,329,386	+		CCNA_02178	0.42	-0.5
2,329,386	+		CCNA_02178	0.42	-2.5
2,329,396	+		CCNA_02178	0.44	+0.0
2,329,396	+		CCNA_02178	0.44	+1.6
2,329,396	+		CCNA_02178	0.44	+0.5
2,329,396	+		CCNA_02178	0.44	+0.1
2,329,404	-		CCNA_02178	0.44	+0.8
2,329,406	+		CCNA_02178	0.45	+1.7
2,329,424	+		CCNA_02178	0.47	-1.3
2,329,432	-		CCNA_02178	0.48	+0.7
2,329,432	-		CCNA_02178	0.48	+0.1
2,329,432	-		CCNA_02178	0.48	-0.8
2,329,517	+		CCNA_02178	0.57	+0.7
2,329,570	+		CCNA_02178	0.63	-0.3
2,329,578	-		CCNA_02178	0.64	+0.1
2,329,616	-		CCNA_02178	0.68	-2.1
2,329,631	+		CCNA_02178	0.70	-1.1
2,329,683	+		CCNA_02178	0.75	+0.8
2,329,702	-		CCNA_02178	0.77	+0.1
2,329,717	-		CCNA_02178	0.79	+0.4
2,329,756	+		CCNA_02178	0.83	+0.7
2,329,764	-		CCNA_02178	0.84	+2.3
2,329,772	-		CCNA_02178	0.85	-0.4
2,329,802	-		CCNA_02178	0.88	+0.2
2,329,812	+		CCNA_02178	0.90	+3.3
2,329,822	+				+1.0
2,329,825	-				-1.0
2,330,076	+				-0.9
2,330,076	+				-1.1
2,330,110	-				+0.3
2,330,115	-				-2.5
2,330,141	+				-0.4
2,330,251	+				-2.0
2,330,284	+		CCNA_02179	0.11	-1.3
2,330,341	+		CCNA_02179	0.16	-0.7
2,330,349	-		CCNA_02179	0.16	+0.3
2,330,372	+		CCNA_02179	0.18	+0.8
2,330,382	+		CCNA_02179	0.19	+1.7
2,330,425	+		CCNA_02179	0.22	-0.0
2,330,433	-		CCNA_02179	0.23	+1.4
2,330,467	-		CCNA_02179	0.25	+0.2
2,330,493	+		CCNA_02179	0.27	+0.2
2,330,501	-		CCNA_02179	0.28	-1.0
2,330,531	-		CCNA_02179	0.30	-1.3
2,330,548	+		CCNA_02179	0.32	+1.2
2,330,559	-		CCNA_02179	0.32	+0.7
2,330,559	-		CCNA_02179	0.32	+0.0
2,330,583	+		CCNA_02179	0.34	-0.1
2,330,622	-		CCNA_02179	0.37	-0.6
2,330,632	+		CCNA_02179	0.38	-1.8
2,330,710	+		CCNA_02179	0.44	-1.3
2,330,715	+		CCNA_02179	0.44	+3.0
2,330,715	+		CCNA_02179	0.44	+0.7
2,330,723	-		CCNA_02179	0.45	+0.5
2,330,723	-		CCNA_02179	0.45	-0.9
2,330,735	-		CCNA_02179	0.46	-0.0
2,330,741	-		CCNA_02179	0.46	-0.1
2,330,774	-		CCNA_02179	0.49	-0.3
2,330,793	-		CCNA_02179	0.51	-1.2
2,330,796	-		CCNA_02179	0.51	+0.2
2,330,809	+		CCNA_02179	0.52	-0.1
2,330,890	+		CCNA_02179	0.58	+1.2
2,330,897	-		CCNA_02179	0.59	+0.1
2,330,897	-		CCNA_02179	0.59	-0.3