Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02142

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,299,819	+				+0.3
2,299,859	+				+1.2
2,299,860	+				-2.5
2,299,867	-				+1.4
2,299,959	+				-0.5
2,299,959	+				+0.2
2,299,967	-				+1.8
2,299,973	-				+1.2
2,300,017	+		CCNA_02141	0.14	-0.9
2,300,025	-		CCNA_02141	0.16	+1.9
2,300,081	-		CCNA_02141	0.25	+0.9
2,300,081	-		CCNA_02141	0.25	+0.2
2,300,094	-		CCNA_02141	0.27	+1.0
2,300,140	+		CCNA_02141	0.34	-1.5
2,300,148	-		CCNA_02141	0.36	+1.0
2,300,148	-		CCNA_02141	0.36	-0.2
2,300,148	-		CCNA_02141	0.36	+1.6
2,300,148	-		CCNA_02141	0.36	+1.1
2,300,215	-		CCNA_02141	0.46	+0.5
2,300,252	-		CCNA_02141	0.52	+3.0
2,300,252	-		CCNA_02141	0.52	+0.4
2,300,306	-		CCNA_02141	0.61	+1.4
2,300,450	+		CCNA_02141	0.84	-0.0
2,300,455	+		CCNA_02141	0.85	-0.8
2,300,455	+		CCNA_02141	0.85	-0.2
2,300,458	-		CCNA_02141	0.86	+0.5
2,300,458	-		CCNA_02141	0.86	-0.1
2,300,570	+				+0.7
2,300,627	+				-0.9
2,300,635	-				+0.1
2,300,635	-				+0.3
2,300,635	-				-0.7
2,300,760	+				-1.8
2,300,769	+				-0.5
2,300,777	-				-0.3
2,300,855	+		CCNA_02142	0.11	+0.3
2,300,855	+		CCNA_02142	0.11	+0.0
2,300,863	-		CCNA_02142	0.12	-2.2
2,300,891	-		CCNA_02142	0.16	+1.4
2,300,906	+		CCNA_02142	0.18	+0.0
2,300,914	-		CCNA_02142	0.19	+2.3
2,300,914	-		CCNA_02142	0.19	+1.6
2,300,914	-		CCNA_02142	0.19	+2.5
2,300,916	+		CCNA_02142	0.20	+1.0
2,300,921	+		CCNA_02142	0.20	-1.4
2,300,930	-		CCNA_02142	0.21	+1.4
2,300,930	-		CCNA_02142	0.21	-1.0
2,300,997	+		CCNA_02142	0.30	+1.5
2,301,033	+		CCNA_02142	0.35	+1.0
2,301,033	+		CCNA_02142	0.35	-0.4
2,301,040	-		CCNA_02142	0.36	-2.0
2,301,050	+		CCNA_02142	0.38	+0.2
2,301,051	+		CCNA_02142	0.38	+0.7
2,301,051	+		CCNA_02142	0.38	-0.1
2,301,071	+		CCNA_02142	0.41	-0.3
2,301,074	-		CCNA_02142	0.41	-1.9
2,301,131	-		CCNA_02142	0.49	-0.9
2,301,136	+		CCNA_02142	0.49	+1.6
2,301,164	+		CCNA_02142	0.53	+0.5
2,301,164	+		CCNA_02142	0.53	+0.4
2,301,164	+		CCNA_02142	0.53	+0.3
2,301,172	-		CCNA_02142	0.54	+0.4
2,301,172	-		CCNA_02142	0.54	+0.0
2,301,175	+		CCNA_02142	0.55	-0.2
2,301,190	-		CCNA_02142	0.57	+2.4
2,301,206	+		CCNA_02142	0.59	+0.1
2,301,233	-		CCNA_02142	0.62	+0.4
2,301,268	+		CCNA_02142	0.67	+1.1
2,301,270	+		CCNA_02142	0.67	+0.6
2,301,344	+		CCNA_02142	0.78	+1.2
2,301,352	-		CCNA_02142	0.79	-2.0
2,301,380	+		CCNA_02142	0.82	+0.4
2,301,388	-		CCNA_02142	0.83	-1.4
2,301,388	-		CCNA_02142	0.83	-1.0
2,301,426	+		CCNA_02142	0.89	+1.9
2,301,434	-		CCNA_02142	0.90	-2.4
2,301,449	-				-2.3
2,301,494	+				+0.8
2,301,499	+				+0.2
2,301,537	-				+0.3
2,301,549	+				+0.0
2,301,559	-				-0.0
2,301,581	-				+0.4
2,301,611	-		CCNA_02143	0.11	-1.9
2,301,639	+		CCNA_02143	0.15	-0.1
2,301,696	+		CCNA_02143	0.22	+0.7
2,301,751	+		CCNA_02143	0.29	-0.0
2,301,766	+		CCNA_02143	0.31	+1.2
2,301,776	+		CCNA_02143	0.32	+1.2
2,301,776	+		CCNA_02143	0.32	-1.3
2,301,776	+		CCNA_02143	0.32	-0.6
2,301,776	+		CCNA_02143	0.32	-0.2
2,301,776	+		CCNA_02143	0.32	-0.0
2,301,776	+		CCNA_02143	0.32	+0.1
2,301,784	-		CCNA_02143	0.33	-1.2
2,301,784	-		CCNA_02143	0.33	-2.1
2,301,784	-		CCNA_02143	0.33	-0.9
2,301,784	-		CCNA_02143	0.33	+0.4
2,301,784	-		CCNA_02143	0.33	-0.3
2,301,786	+		CCNA_02143	0.33	-1.4
2,301,816	+		CCNA_02143	0.37	+1.0
2,301,836	+		CCNA_02143	0.40	+0.2
2,301,859	+		CCNA_02143	0.43	+2.3
2,301,893	+		CCNA_02143	0.47	+0.7
2,301,898	+		CCNA_02143	0.48	-0.7
2,301,980	+		CCNA_02143	0.58	+1.8
2,302,010	-		CCNA_02143	0.62	-0.7
2,302,014	+		CCNA_02143	0.62	+0.9
2,302,028	-		CCNA_02143	0.64	-0.8
2,302,059	+		CCNA_02143	0.68	+0.3
2,302,078	-		CCNA_02143	0.70	-0.3
2,302,170	+		CCNA_02143	0.82	+0.4
2,302,178	-		CCNA_02143	0.83	-0.4
2,302,183	-		CCNA_02143	0.84	-0.8
2,302,184	+		CCNA_02143	0.84	-0.6
2,302,216	+		CCNA_02143	0.88	+1.3
2,302,221	+		CCNA_02143	0.88	+1.2
2,302,223	+		CCNA_02143	0.89	+1.9
2,302,224	-		CCNA_02143	0.89	-1.2
2,302,228	+		CCNA_02143	0.89	+1.4
2,302,229	-		CCNA_02143	0.89	-2.3
2,302,259	-				-1.0
2,302,323	-				-0.4
2,302,351	+				+0.4
2,302,359	-				+0.9
2,302,366	+				+2.2
2,302,450	+		CCNA_02144	0.17	+1.0
2,302,456	-		CCNA_02144	0.17	+1.6
2,302,499	-		CCNA_02144	0.23	+2.1
2,302,504	+		CCNA_02144	0.23	+1.4