Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02125

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,275,412	+				+1.6
2,275,463	-				-0.5
2,275,463	-				+0.4
2,275,463	-				-0.1
2,275,463	-				-1.3
2,275,463	-				+2.1
2,275,463	-				+0.2
2,275,463	-				+1.3
2,275,684	-		CCNA_02124	0.25	+2.1
2,275,728	-		CCNA_02124	0.35	-1.4
2,275,756	-		CCNA_02124	0.41	+1.1
2,275,780	-		CCNA_02124	0.46	+0.8
2,275,792	+		CCNA_02124	0.49	-0.1
2,275,800	-		CCNA_02124	0.50	+0.3
2,275,828	+		CCNA_02124	0.56	+0.1
2,275,836	-		CCNA_02124	0.58	-1.0
2,275,836	-		CCNA_02124	0.58	-0.4
2,275,846	-		CCNA_02124	0.60	+2.9
2,275,846	-		CCNA_02124	0.60	-1.3
2,275,928	-		CCNA_02124	0.78	+1.5
2,276,220	+				-0.9
2,276,261	-				-0.2
2,276,277	-				+1.7
2,276,309	+				-0.6
2,276,357	-				+2.6
2,276,371	-				+3.6
2,276,406	+				-0.7
2,276,441	+				+1.2
2,276,444	-				+2.2
2,276,449	-				+1.6
2,276,455	-				+2.7
2,276,500	-				+2.3
2,276,518	+				-1.6
2,276,518	+				+0.4
2,276,526	-				+3.3
2,276,526	-				+3.8
2,276,526	-				+3.2
2,276,625	+		CCNA_02125	0.12	-1.5
2,276,683	-		CCNA_02125	0.14	+3.2
2,276,770	+		CCNA_02125	0.17	-0.1
2,276,785	-		CCNA_02125	0.18	+2.4
2,276,793	+		CCNA_02125	0.18	-0.4
2,276,796	-		CCNA_02125	0.18	+0.7
2,276,841	+		CCNA_02125	0.19	-1.5
2,276,841	+		CCNA_02125	0.19	+0.6
2,276,849	-		CCNA_02125	0.20	+1.6
2,276,851	-		CCNA_02125	0.20	+1.8
2,276,851	-		CCNA_02125	0.20	+1.7
2,276,909	+		CCNA_02125	0.22	+0.6
2,276,909	+		CCNA_02125	0.22	+0.8
2,276,909	+		CCNA_02125	0.22	-0.9
2,276,917	-		CCNA_02125	0.22	+1.7
2,276,917	-		CCNA_02125	0.22	+3.2
2,276,997	-		CCNA_02125	0.25	+2.7
2,277,022	-		CCNA_02125	0.26	+2.8
2,277,038	+		CCNA_02125	0.26	-1.1
2,277,076	-		CCNA_02125	0.27	+2.0
2,277,076	-		CCNA_02125	0.27	+1.7
2,277,076	-		CCNA_02125	0.27	+2.3
2,277,123	+		CCNA_02125	0.29	-0.9
2,277,167	-		CCNA_02125	0.31	+2.1
2,277,169	-		CCNA_02125	0.31	+2.8
2,277,169	-		CCNA_02125	0.31	+2.5
2,277,169	-		CCNA_02125	0.31	+2.4
2,277,169	-		CCNA_02125	0.31	+2.6
2,277,388	-		CCNA_02125	0.38	+4.2
2,277,439	-		CCNA_02125	0.40	+3.5
2,277,444	-		CCNA_02125	0.40	+3.1
2,277,475	-		CCNA_02125	0.41	+2.2
2,277,484	-		CCNA_02125	0.41	+1.9
2,277,493	+		CCNA_02125	0.42	-0.3
2,277,509	-		CCNA_02125	0.42	+1.6
2,277,567	-		CCNA_02125	0.44	+2.1
2,277,567	-		CCNA_02125	0.44	+3.1
2,277,596	+		CCNA_02125	0.45	-0.2
2,277,604	+		CCNA_02125	0.46	-0.6
2,277,663	-		CCNA_02125	0.48	+3.0
2,277,812	+		CCNA_02125	0.53	-1.0
2,277,812	+		CCNA_02125	0.53	-1.5
2,277,908	-		CCNA_02125	0.56	+2.7
2,277,947	-		CCNA_02125	0.57	+2.3
2,277,984	-		CCNA_02125	0.59	+2.1
2,278,063	+		CCNA_02125	0.61	-1.8
2,278,079	+		CCNA_02125	0.62	-1.2
2,278,141	-		CCNA_02125	0.64	+2.0
2,278,141	-		CCNA_02125	0.64	+1.9
2,278,159	-		CCNA_02125	0.65	+2.8
2,278,173	-		CCNA_02125	0.65	+2.9
2,278,245	-		CCNA_02125	0.67	+2.1
2,278,245	-		CCNA_02125	0.67	+3.1
2,278,245	-		CCNA_02125	0.67	+3.1
2,278,314	-		CCNA_02125	0.70	+2.8
2,278,356	-		CCNA_02125	0.71	+2.7
2,278,356	-		CCNA_02125	0.71	+2.2
2,278,369	-		CCNA_02125	0.72	+2.0
2,278,396	+		CCNA_02125	0.73	-0.5
2,278,396	+		CCNA_02125	0.73	-1.1
2,278,396	+		CCNA_02125	0.73	-0.1
2,278,396	+		CCNA_02125	0.73	-1.3
2,278,404	-		CCNA_02125	0.73	+2.8
2,278,404	-		CCNA_02125	0.73	+2.7
2,278,404	-		CCNA_02125	0.73	+3.4
2,278,404	-		CCNA_02125	0.73	+2.8
2,278,404	-		CCNA_02125	0.73	+3.4
2,278,404	-		CCNA_02125	0.73	+3.2
2,278,404	-		CCNA_02125	0.73	+3.9
2,278,413	-		CCNA_02125	0.73	+2.6
2,278,463	+		CCNA_02125	0.75	-1.8
2,278,463	+		CCNA_02125	0.75	+1.1
2,278,463	-		CCNA_02125	0.75	+2.1
2,278,507	+		CCNA_02125	0.76	+0.8
2,278,517	+		CCNA_02125	0.77	-0.8
2,278,550	+		CCNA_02125	0.78	+0.2
2,278,552	-		CCNA_02125	0.78	+2.7
2,278,558	-		CCNA_02125	0.78	+2.0
2,278,558	-		CCNA_02125	0.78	+2.4
2,278,558	-		CCNA_02125	0.78	+3.1
2,278,630	+		CCNA_02125	0.81	-0.6
2,278,648	-		CCNA_02125	0.81	+1.9
2,278,672	+		CCNA_02125	0.82	+0.5
2,278,680	-		CCNA_02125	0.82	+2.7
2,278,700	-		CCNA_02125	0.83	+1.6
2,278,705	-		CCNA_02125	0.83	+1.0
2,278,732	+		CCNA_02125	0.84	+0.5
2,278,756	-		CCNA_02125	0.85	+2.5
2,278,792	-		CCNA_02125	0.86	+2.6
2,278,792	-		CCNA_02125	0.86	+2.7
2,278,836	-		CCNA_02125	0.88	+2.9
2,278,922	-				+0.9
2,278,996	+				-1.3
2,279,023	+				-0.9
2,279,031	-				+1.7
2,279,052	+				-0.8
2,279,052	+				-2.1
2,279,174	-				+1.8
2,279,174	-				-0.5
2,279,333	-				+0.9
2,279,335	+				-0.4
2,279,358	-				-1.0
2,279,392	-				-0.8
2,279,399	-				-1.1
2,279,413	+				-1.6
2,279,416	-				-1.4
2,279,443	-				+2.4
2,279,467	-		CCNA_02126	0.29	-0.1
2,279,469	+		CCNA_02126	0.30	+0.8
2,279,477	-		CCNA_02126	0.33	+0.6
2,279,605	+				+1.1
2,279,614	+				+1.6
2,279,614	+				+0.6
2,279,614	+				-0.4
2,279,622	-				+0.5
2,279,622	-				+0.8
2,279,662	+				-0.2
2,279,671	-				+3.1
2,279,722	+				-1.7
2,279,722	+				+0.9
2,279,722	+				+0.3
2,279,722	+				-0.9
2,279,725	-				+3.0
2,279,730	-				+3.0
2,279,730	-				+3.6
2,279,730	-				+3.4
2,279,773	-				+3.2
2,279,789	+		CCNA_02127	0.10	+0.4
2,279,797	-		CCNA_02127	0.11	+3.7
2,279,797	-		CCNA_02127	0.11	+2.7
2,279,797	-		CCNA_02127	0.11	+3.8
2,279,806	-		CCNA_02127	0.11	+3.1
2,279,827	-		CCNA_02127	0.13	+3.2
2,279,886	-		CCNA_02127	0.16	+3.7
2,279,935	-		CCNA_02127	0.19	+3.8
2,279,956	+		CCNA_02127	0.20	+1.8
2,279,968	+		CCNA_02127	0.21	+1.3
2,279,973	-		CCNA_02127	0.21	+3.3
2,279,979	+		CCNA_02127	0.22	+1.5
2,279,979	+		CCNA_02127	0.22	+3.6
2,279,979	+		CCNA_02127	0.22	-0.2
2,279,987	-		CCNA_02127	0.22	+2.7
2,280,000	-		CCNA_02127	0.23	+3.8
2,280,004	+		CCNA_02127	0.23	+0.6
2,280,014	+		CCNA_02127	0.24	+0.4
2,280,026	+		CCNA_02127	0.25	-0.2
2,280,034	-		CCNA_02127	0.25	+4.0
2,280,034	-		CCNA_02127	0.25	+3.8
2,280,060	-		CCNA_02127	0.27	+4.2
2,280,102	-		CCNA_02127	0.29	+3.6
2,280,105	+		CCNA_02127	0.29	+0.3
2,280,113	-		CCNA_02127	0.30	+4.0
2,280,135	-		CCNA_02127	0.31	+3.9
2,280,155	+		CCNA_02127	0.32	-0.4
2,280,167	+		CCNA_02127	0.33	+2.0