Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02092

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,239,133	-				+0.7
2,239,159	+				+0.0
2,239,159	+				-1.0
2,239,159	+				+0.8
2,239,159	+				-0.6
2,239,159	+				-0.5
2,239,159	+				-0.5
2,239,159	+				+0.6
2,239,159	+				+0.5
2,239,159	+				+2.6
2,239,159	+				+1.1
2,239,159	+				+0.0
2,239,159	+				+0.0
2,239,159	+				+0.4
2,239,159	+				+1.2
2,239,159	+				+1.6
2,239,159	+				-0.8
2,239,159	+				+1.3
2,239,165	+				+0.2
2,239,167	-				+3.1
2,239,167	-				-1.0
2,239,167	-				+0.1
2,239,167	-				+3.7
2,239,167	-				-2.2
2,239,167	-				+1.2
2,239,167	-				-1.3
2,239,167	-				-0.3
2,239,167	-				-0.9
2,239,167	-				-0.9
2,239,167	-				-1.6
2,239,167	-				-1.3
2,239,167	-				+0.1
2,239,226	+				+0.6
2,239,234	-				-0.0
2,239,234	-				+0.9
2,239,235	+				+0.7
2,239,292	+		CCNA_02091	0.12	+0.4
2,239,301	+		CCNA_02091	0.13	-0.4
2,239,301	+		CCNA_02091	0.13	+0.9
2,239,309	-		CCNA_02091	0.14	+0.1
2,239,341	+		CCNA_02091	0.18	-0.8
2,239,341	+		CCNA_02091	0.18	-0.0
2,239,390	+		CCNA_02091	0.23	+0.2
2,239,443	+		CCNA_02091	0.29	+0.2
2,239,443	+		CCNA_02091	0.29	+0.9
2,239,451	-		CCNA_02091	0.30	-0.6
2,239,451	-		CCNA_02091	0.30	+1.9
2,239,529	+		CCNA_02091	0.38	-1.2
2,239,531	-		CCNA_02091	0.38	-0.7
2,239,542	+		CCNA_02091	0.40	+0.8
2,239,560	-		CCNA_02091	0.41	+0.4
2,239,584	+		CCNA_02091	0.44	+1.6
2,239,624	-		CCNA_02091	0.48	-0.5
2,239,651	-		CCNA_02091	0.51	+0.7
2,239,685	+		CCNA_02091	0.55	-0.4
2,239,693	-				+1.5
2,239,726	+		CCNA_02091	0.60	-1.1
2,239,734	-		CCNA_02091	0.60	+0.7
2,239,771	-		CCNA_02091	0.64	-0.8
2,239,771	-		CCNA_02091	0.64	-1.3
2,239,903	+		CCNA_02091	0.79	-0.4
2,239,953	-		CCNA_02091	0.84	-0.5
2,240,027	-				-1.2
2,240,123	-				+0.5
2,240,196	+		CCNA_02092	0.14	-1.2
2,240,207	+		CCNA_02092	0.16	-0.1
2,240,215	-		CCNA_02092	0.17	-1.2
2,240,218	+				+1.2
2,240,285	+		CCNA_02092	0.28	+2.6
2,240,294	-		CCNA_02092	0.29	+0.7
2,240,294	-		CCNA_02092	0.29	-1.5
2,240,294	-		CCNA_02092	0.29	+0.9
2,240,322	-		CCNA_02092	0.34	+0.6
2,240,326	-		CCNA_02092	0.34	+2.7
2,240,346	+		CCNA_02092	0.38	+0.4
2,240,354	-		CCNA_02092	0.39	+0.5
2,240,356	+		CCNA_02092	0.39	+1.2
2,240,373	-		CCNA_02092	0.42	-1.1
2,240,409	-		CCNA_02092	0.47	-0.5
2,240,438	+		CCNA_02092	0.52	-1.0
2,240,489	-		CCNA_02092	0.60	-0.3
2,240,494	-		CCNA_02092	0.61	-0.0
2,240,496	+		CCNA_02092	0.61	+1.6
2,240,504	-		CCNA_02092	0.62	-0.2
2,240,509	-		CCNA_02092	0.63	+0.6
2,240,673	-		CCNA_02092	0.89	-0.5
2,240,681	+				-1.0
2,240,755	-				-0.3
2,240,788	+				-2.1
2,240,806	-				-0.9
2,240,828	+				-1.0
2,240,833	+				+0.9
2,240,836	-				+0.8
2,240,836	-				+0.9
2,240,836	-				+1.7
2,240,836	-				-2.1
2,240,918	-				+1.1
2,240,957	+				-0.9
2,240,984	-				-0.4
2,240,998	+				-0.9
2,241,018	-				+0.2
2,241,058	+		CCNA_02093	0.11	+0.1
2,241,066	-		CCNA_02093	0.12	-0.8
2,241,066	-		CCNA_02093	0.12	-0.9
2,241,066	-		CCNA_02093	0.12	-0.5
2,241,080	-		CCNA_02093	0.13	-0.2
2,241,111	-		CCNA_02093	0.14	-1.2
2,241,162	+		CCNA_02093	0.17	+0.6
2,241,165	-		CCNA_02093	0.17	+2.4
2,241,193	-		CCNA_02093	0.19	-1.0
2,241,193	-		CCNA_02093	0.19	-0.1
2,241,228	-		CCNA_02093	0.21	+1.2
2,241,231	+		CCNA_02093	0.21	-1.6
2,241,235	+		CCNA_02093	0.21	+0.5
2,241,235	+		CCNA_02093	0.21	-1.8
2,241,253	+		CCNA_02093	0.22	+0.5
2,241,253	+		CCNA_02093	0.22	+3.7
2,241,261	-		CCNA_02093	0.22	+0.0
2,241,261	-		CCNA_02093	0.22	-1.0
2,241,261	-		CCNA_02093	0.22	-0.1
2,241,261	-		CCNA_02093	0.22	+1.2
2,241,315	+		CCNA_02093	0.25	-1.5
2,241,362	+		CCNA_02093	0.28	+0.9
2,241,379	+		CCNA_02093	0.29	+0.2
2,241,391	-		CCNA_02093	0.29	-0.2
2,241,392	-		CCNA_02093	0.29	+0.6
2,241,394	+		CCNA_02093	0.30	-0.2
2,241,407	-		CCNA_02093	0.30	+1.5
2,241,407	-		CCNA_02093	0.30	-0.8
2,241,452	+		CCNA_02093	0.33	-1.4
2,241,681	+		CCNA_02093	0.45	+0.0
2,241,681	+		CCNA_02093	0.45	-0.9
2,241,681	+		CCNA_02093	0.45	-1.4
2,241,681	+		CCNA_02093	0.45	+0.1
2,241,687	+		CCNA_02093	0.45	-2.3
2,241,689	-		CCNA_02093	0.46	-1.3
2,241,689	-		CCNA_02093	0.46	-1.5
2,241,689	-		CCNA_02093	0.46	-2.0