Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02021

Experiment: PYE with nitrite 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02019 and CCNA_02020 are separated by 82 nucleotidesCCNA_02020 and CCNA_03961 are separated by 10 nucleotidesCCNA_03961 and CCNA_02021 overlap by 4 nucleotidesCCNA_02021 and CCNA_02022 overlap by 1 nucleotides CCNA_02019: CCNA_02019 - NADH-quinone oxidoreductase chain J, at 2,166,636 to 2,167,253 _02019 CCNA_02020: CCNA_02020 - NADH-quinone oxidoreductase chain I, at 2,167,336 to 2,167,827 _02020 CCNA_03961: CCNA_03961 - hypothetical protein, at 2,167,838 to 2,168,062 _03961 CCNA_02021: CCNA_02021 - hypothetical protein, at 2,168,059 to 2,168,298 _02021 CCNA_02022: CCNA_02022 - NADH-quinone oxidoreductase chain H, at 2,168,298 to 2,169,368 _02022 Position (kb) 2168 2169Strain fitness (log2 ratio) -1 0 1 2 3 4at 2167.844 kb on - strandat 2167.877 kb on - strand, within CCNA_03961at 2167.877 kb on - strand, within CCNA_03961at 2167.877 kb on - strand, within CCNA_03961at 2167.931 kb on + strand, within CCNA_03961at 2167.964 kb on - strandat 2168.108 kb on + strand, within CCNA_02021at 2168.111 kb on - strand, within CCNA_02021at 2168.114 kb on + strand, within CCNA_02021at 2168.122 kb on - strand, within CCNA_02021at 2168.122 kb on - strand, within CCNA_02021at 2168.143 kb on + strand, within CCNA_02021at 2168.151 kb on - strand, within CCNA_02021at 2168.158 kb on + strand, within CCNA_02021at 2168.158 kb on - strand, within CCNA_02021at 2168.210 kb on + strand, within CCNA_02021at 2168.218 kb on - strand, within CCNA_02021

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
remove
2,167,844 - +3.6
2,167,877 - CCNA_03961 0.17 +3.1
2,167,877 - CCNA_03961 0.17 +3.5
2,167,877 - CCNA_03961 0.17 +3.5
2,167,931 + CCNA_03961 0.41 +1.1
2,167,964 - +2.7
2,168,108 + CCNA_02021 0.20 -0.4
2,168,111 - CCNA_02021 0.22 +3.4
2,168,114 + CCNA_02021 0.23 +0.8
2,168,122 - CCNA_02021 0.26 -0.1
2,168,122 - CCNA_02021 0.26 +3.3
2,168,143 + CCNA_02021 0.35 +0.0
2,168,151 - CCNA_02021 0.38 +4.1
2,168,158 + CCNA_02021 0.41 +2.2
2,168,158 - CCNA_02021 0.41 +3.8
2,168,210 + CCNA_02021 0.63 -0.7
2,168,218 - CCNA_02021 0.66 +4.3

Or see this region's nucleotide sequence