Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02003

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,147,912	+		CCNA_02001	0.71	+1.3
2,147,923	+		CCNA_02001	0.73	+0.2
2,147,923	+		CCNA_02001	0.73	-1.2
2,147,924	+		CCNA_02001	0.73	+0.8
2,147,926	-		CCNA_02001	0.74	-1.1
2,147,951	+		CCNA_02001	0.77	+0.4
2,147,957	+		CCNA_02001	0.78	-0.5
2,147,957	+		CCNA_02001	0.78	-0.8
2,147,957	+		CCNA_02001	0.78	-1.2
2,147,979	-		CCNA_02001	0.82	-2.4
2,147,984	-		CCNA_02001	0.82	+0.4
2,148,050	+				-1.2
2,148,067	+				-0.4
2,148,086	-				-1.7
2,148,103	+				-0.4
2,148,112	+				+1.7
2,148,117	+				+0.6
2,148,120	-				+1.3
2,148,120	-				+1.4
2,148,125	-				-1.1
2,148,133	+				+0.3
2,148,138	+				-0.8
2,148,146	-				-0.8
2,148,146	-				-0.1
2,148,164	-				+2.4
2,148,164	-				+0.3
2,148,164	-				+0.4
2,148,171	+				-0.8
2,148,180	-		CCNA_02002	0.11	-0.7
2,148,187	-		CCNA_02002	0.12	+0.8
2,148,201	-		CCNA_02002	0.14	-0.1
2,148,201	-		CCNA_02002	0.14	+0.8
2,148,227	+		CCNA_02002	0.19	+0.4
2,148,227	+		CCNA_02002	0.19	-1.6
2,148,295	+		CCNA_02002	0.29	+0.4
2,148,333	+		CCNA_02002	0.35	-0.0
2,148,350	-		CCNA_02002	0.38	-1.5
2,148,350	-		CCNA_02002	0.38	+1.1
2,148,377	-		CCNA_02002	0.42	-0.2
2,148,377	-		CCNA_02002	0.42	+1.7
2,148,378	+		CCNA_02002	0.43	+1.3
2,148,386	-		CCNA_02002	0.44	+1.2
2,148,427	+		CCNA_02002	0.50	+0.0
2,148,434	-		CCNA_02002	0.51	-1.2
2,148,445	-		CCNA_02002	0.53	-1.0
2,148,463	+		CCNA_02002	0.56	+0.8
2,148,474	+		CCNA_02002	0.58	-0.0
2,148,474	+		CCNA_02002	0.58	-0.6
2,148,482	-		CCNA_02002	0.59	+0.2
2,148,496	+		CCNA_02002	0.61	-0.8
2,148,504	-		CCNA_02002	0.63	-1.1
2,148,551	-		CCNA_02002	0.70	+1.1
2,148,559	-		CCNA_02002	0.71	+0.3
2,148,559	-		CCNA_02002	0.71	-0.9
2,148,595	+		CCNA_02002	0.77	-0.4
2,148,662	-		CCNA_02002	0.88	-1.3
2,148,662	-		CCNA_02002	0.88	-0.1
2,148,662	-		CCNA_02002	0.88	-0.0
2,148,662	-		CCNA_02002	0.88	-0.5
2,148,662	-		CCNA_02002	0.88	+1.0
2,148,675	+		CCNA_02002	0.90	+0.5
2,148,688	+				+1.5
2,148,696	-				+0.8
2,148,795	+				+1.4
2,152,348	-				-1.3
2,152,413	-		CCNA_02004	0.43	+2.5
2,152,469	-				-1.0
2,152,540	-				-0.2
2,152,560	+				-1.6
2,152,565	+				-0.2
2,152,565	+				+1.0
2,152,565	+				-1.3
2,152,573	-				+1.1
2,152,573	-				+0.8
2,152,578	-				-0.6
2,152,583	+				+0.4
2,152,617	-				+1.7
2,152,619	+				-2.2
2,152,619	+				-0.5
2,152,619	+				-0.6
2,152,627	-				+0.7
2,152,627	-				-0.3
2,152,627	-				+0.2
2,152,675	+				-0.5
2,152,686	+				-1.2
2,152,699	-				+1.8
2,152,709	-				-1.0
2,152,733	+		CCNA_02005	0.11	+1.5
2,152,741	-		CCNA_02005	0.12	-0.5
2,152,761	+		CCNA_02005	0.14	-0.3
2,152,777	+		CCNA_02005	0.15	+1.8
2,152,806	+		CCNA_02005	0.18	-1.1
2,152,806	+		CCNA_02005	0.18	+0.7
2,152,806	+		CCNA_02005	0.18	+1.8
2,152,848	+		CCNA_02005	0.23	-1.0
2,152,848	+		CCNA_02005	0.23	-0.1
2,152,866	-		CCNA_02005	0.25	+1.5
2,152,868	-		CCNA_02005	0.25	+0.4
2,152,874	-		CCNA_02005	0.26	-0.7
2,152,938	-		CCNA_02005	0.32	-1.4
2,152,966	-		CCNA_02005	0.35	+3.3
2,153,011	+		CCNA_02005	0.40	-0.9
2,153,088	-		CCNA_02005	0.48	-0.1
2,153,088	-		CCNA_02005	0.48	+3.3
2,153,120	+		CCNA_02005	0.51	-0.1
2,153,169	+		CCNA_02005	0.56	-0.2
2,153,177	-		CCNA_02005	0.57	+0.6
2,153,199	-		CCNA_02005	0.59	+2.0
2,153,223	-		CCNA_02005	0.62	-1.6
2,153,250	-		CCNA_02005	0.65	-1.3
2,153,281	-		CCNA_02005	0.68	-2.6
2,153,283	+		CCNA_02005	0.68	-0.0
2,153,291	-		CCNA_02005	0.69	+0.5
2,153,325	+		CCNA_02005	0.72	+0.3
2,153,325	+				+1.7