Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01919

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
2,061,766	-		CCNA_01918	0.32	+1.0
2,061,768	+		CCNA_01918	0.32	+2.3
2,061,783	-		CCNA_01918	0.33	-0.6
2,061,837	+		CCNA_01918	0.37	+3.7
2,061,837	+		CCNA_01918	0.37	+3.1
2,061,837	+		CCNA_01918	0.37	+3.1
2,061,837	+		CCNA_01918	0.37	+2.6
2,061,845	-		CCNA_01918	0.38	+0.5
2,061,845	-		CCNA_01918	0.38	-1.1
2,061,845	-		CCNA_01918	0.38	-0.2
2,061,873	-		CCNA_01918	0.40	+0.9
2,061,939	-		CCNA_01918	0.45	-1.8
2,061,985	-		CCNA_01918	0.48	-1.9
2,062,013	+		CCNA_01918	0.51	+3.0
2,062,023	+		CCNA_01918	0.51	+3.0
2,062,023	+		CCNA_01918	0.51	+2.8
2,062,028	+		CCNA_01918	0.52	+3.0
2,062,031	-		CCNA_01918	0.52	-0.2
2,062,031	-		CCNA_01918	0.52	-0.4
2,062,080	+		CCNA_01918	0.56	+2.3
2,062,113	-		CCNA_01918	0.58	-0.9
2,062,177	+		CCNA_01918	0.63	+2.7
2,062,196	+		CCNA_01918	0.64	+3.5
2,062,196	+		CCNA_01918	0.64	+2.6
2,062,196	+		CCNA_01918	0.64	+1.9
2,062,217	+		CCNA_01918	0.66	+3.3
2,062,232	+		CCNA_01918	0.67	+3.3
2,062,260	-		CCNA_01918	0.69	-1.4
2,062,329	+		CCNA_01918	0.74	+2.9
2,062,337	-		CCNA_01918	0.75	-0.0
2,062,337	-		CCNA_01918	0.75	-0.9
2,062,338	+		CCNA_01918	0.75	+2.7
2,062,386	-		CCNA_01918	0.79	+0.2
2,062,434	+		CCNA_01918	0.82	+2.6
2,062,453	+		CCNA_01918	0.84	+2.5
2,062,477	-		CCNA_01918	0.86	-0.2
2,062,484	-		CCNA_01918	0.86	-0.1
2,062,539	-				-1.0
2,062,543	+				+2.3
2,062,546	-				+1.0
2,062,551	-				-2.6
2,062,558	+				+2.9
2,062,591	-				-0.2
2,062,621	-				-0.9
2,062,711	-				+0.8
2,062,813	-				-0.0
2,062,850	+		CCNA_01919	0.16	+0.7
2,062,853	-		CCNA_01919	0.16	-1.1
2,062,880	-		CCNA_01919	0.20	-1.0
2,062,913	-		CCNA_01919	0.25	+0.7
2,062,937	-		CCNA_01919	0.29	+1.5
2,062,938	-		CCNA_01919	0.29	-0.9
2,062,947	-		CCNA_01919	0.31	+0.4
2,062,973	-		CCNA_01919	0.35	-0.5
2,062,973	-		CCNA_01919	0.35	+0.1
2,062,973	-		CCNA_01919	0.35	-0.5
2,062,973	-		CCNA_01919	0.35	-1.4
2,062,973	-		CCNA_01919	0.35	-0.9
2,062,973	-		CCNA_01919	0.35	-2.1
2,062,973	-		CCNA_01919	0.35	+1.1
2,063,017	+		CCNA_01919	0.41	+1.5
2,063,052	+		CCNA_01919	0.47	+2.4
2,063,052	+		CCNA_01919	0.47	+2.2
2,063,060	-		CCNA_01919	0.48	+2.3
2,063,098	+		CCNA_01919	0.54	+0.2
2,063,103	+		CCNA_01919	0.55	+1.4
2,063,109	+		CCNA_01919	0.56	+1.6
2,063,124	+		CCNA_01919	0.58	+1.9
2,063,132	-		CCNA_01919	0.59	-1.2
2,063,132	-		CCNA_01919	0.59	-0.9
2,063,132	-		CCNA_01919	0.59	+0.7
2,063,154	-		CCNA_01919	0.63	-0.9
2,063,207	+		CCNA_01919	0.71	+1.2
2,063,207	+		CCNA_01919	0.71	+1.8
2,063,215	-		CCNA_01919	0.72	-0.5
2,063,215	-		CCNA_01919	0.72	-0.2
2,063,268	+		CCNA_01919	0.80	+1.5
2,063,268	+		CCNA_01919	0.80	+1.2
2,063,268	+		CCNA_01919	0.80	+1.5
2,063,268	+		CCNA_01919	0.80	+0.7
2,063,276	-		CCNA_01919	0.82	+2.4
2,063,276	-		CCNA_01919	0.82	+2.6
2,063,276	-		CCNA_01919	0.82	+1.9
2,063,347	-				-0.3
2,063,382	-				+0.2
2,063,418	+				-0.1
2,063,427	-				+2.0
2,063,438	+				-0.2
2,063,506	+				-1.5
2,063,521	-				+2.5
2,063,543	+				+0.6
2,063,570	-				+1.7
2,063,618	+				+0.2
2,063,621	-				+1.0
2,063,635	-				+1.3
2,063,644	-				+0.0
2,063,649	-				-0.1
2,063,649	-				-0.6
2,063,653	+				+0.8
2,063,681	-				+1.8
2,063,711	+				-0.3
2,063,760	-				+0.7
2,063,841	-				+3.3
2,063,841	-				+1.3
2,063,864	+		CCNA_01920	0.10	+0.2
2,063,864	+		CCNA_01920	0.10	-0.0
2,063,872	-		CCNA_01920	0.10	+1.8
2,063,885	+		CCNA_01920	0.11	-0.3
2,063,929	+		CCNA_01920	0.12	-1.3
2,063,929	+		CCNA_01920	0.12	+0.0
2,063,953	-		CCNA_01920	0.13	+1.9
2,063,958	-		CCNA_01920	0.13	+1.5
2,063,994	-		CCNA_01920	0.14	+0.2
2,064,011	-		CCNA_01920	0.14	+0.1
2,064,034	-		CCNA_01920	0.15	-0.3
2,064,058	-		CCNA_01920	0.16	+0.2
2,064,067	-		CCNA_01920	0.16	-0.2
2,064,085	+		CCNA_01920	0.16	-0.7
2,064,111	+		CCNA_01920	0.17	-0.2
2,064,111	+		CCNA_01920	0.17	-0.4
2,064,117	+		CCNA_01920	0.17	-0.4
2,064,119	-		CCNA_01920	0.17	+0.6
2,064,119	-		CCNA_01920	0.17	+1.4
2,064,119	-		CCNA_01920	0.17	+0.7
2,064,132	+		CCNA_01920	0.18	+0.3
2,064,277	+		CCNA_01920	0.22	-1.2
2,064,282	+		CCNA_01920	0.22	+0.5
2,064,287	+		CCNA_01920	0.22	+2.7
2,064,290	-		CCNA_01920	0.22	-0.2
2,064,379	+		CCNA_01920	0.25	+2.0
2,064,379	+		CCNA_01920	0.25	+0.6