Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01861

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,994,356	-		CCNA_01860	0.41	+0.9
1,994,358	+		CCNA_01860	0.41	+1.1
1,994,366	-		CCNA_01860	0.42	+0.7
1,994,418	+		CCNA_01860	0.46	+0.7
1,994,418	+		CCNA_01860	0.46	+0.2
1,994,418	+		CCNA_01860	0.46	-0.2
1,994,418	+		CCNA_01860	0.46	-1.6
1,994,418	+		CCNA_01860	0.46	+1.2
1,994,418	+		CCNA_01860	0.46	+0.0
1,994,426	-		CCNA_01860	0.47	-0.2
1,994,456	+		CCNA_01860	0.50	-1.6
1,994,464	+		CCNA_01860	0.50	-0.4
1,994,472	-		CCNA_01860	0.51	-0.1
1,994,472	-		CCNA_01860	0.51	+0.8
1,994,489	+		CCNA_01860	0.52	-0.6
1,994,497	-		CCNA_01860	0.53	+0.9
1,994,573	+		CCNA_01860	0.60	-0.5
1,994,579	+		CCNA_01860	0.60	-0.3
1,994,587	-		CCNA_01860	0.61	+0.1
1,994,616	+		CCNA_01860	0.64	-1.6
1,994,616	+		CCNA_01860	0.64	-0.6
1,994,616	+		CCNA_01860	0.64	+1.9
1,994,651	-		CCNA_01860	0.67	-1.1
1,994,651	-		CCNA_01860	0.67	+0.3
1,994,670	+		CCNA_01860	0.68	-0.4
1,994,678	-		CCNA_01860	0.69	+1.2
1,994,714	-		CCNA_01860	0.72	+0.7
1,994,806	-		CCNA_01860	0.80	+0.4
1,994,866	+		CCNA_01860	0.85	+0.1
1,994,866	+		CCNA_01860	0.85	+0.4
1,994,866	+		CCNA_01860	0.85	+0.6
1,994,866	+		CCNA_01860	0.85	+0.0
1,994,866	+		CCNA_01860	0.85	-0.2
1,994,866	+		CCNA_01860	0.85	-1.0
1,994,866	+		CCNA_01860	0.85	+2.4
1,994,874	-		CCNA_01860	0.86	+0.4
1,994,874	-		CCNA_01860	0.86	-0.8
1,994,874	-		CCNA_01860	0.86	-0.1
1,994,885	-		CCNA_01860	0.87	+0.1
1,994,922	+				-0.9
1,994,936	-				+0.6
1,994,959	+				+0.4
1,994,966	+				-1.6
1,994,974	-				-0.9
1,994,999	+				+1.5
1,995,002	+				-0.5
1,995,008	+				+1.1
1,995,033	+				+0.6
1,995,041	-				+0.2
1,995,041	-				-0.9
1,995,041	-				-0.3
1,995,051	+				+0.3
1,995,078	-				+0.3
1,995,100	+				+1.9
1,995,113	+				-0.6
1,995,113	+				+0.5
1,995,118	+				+0.9
1,995,156	-				+1.1
1,995,169	-				+1.9
1,995,220	+				+1.1
1,995,228	-				-0.9
1,995,230	+				-0.9
1,995,230	+				-1.1
1,995,230	+				-0.8
1,995,230	+				-0.6
1,995,238	-				-1.2
1,995,238	-				-1.0
1,995,238	-				-0.5
1,995,238	-				+0.3
1,995,238	-				-0.2
1,995,243	+				-1.0
1,995,305	+				-0.7
1,995,336	+				+1.8
1,995,346	+				+0.8
1,995,346	+				+0.0
1,995,346	+				+1.6
1,995,354	-				+1.4
1,995,396	+				-0.7
1,995,408	+				-0.5
1,995,408	+				+0.1
1,995,421	+		CCNA_01861	0.11	+0.5
1,995,436	-		CCNA_01861	0.12	+0.6
1,995,438	+		CCNA_01861	0.12	+0.9
1,995,535	+		CCNA_01861	0.20	+1.5
1,995,569	+		CCNA_01861	0.23	-1.0
1,995,577	-				+6.5
1,995,577	-		CCNA_01861	0.24	+2.4
1,995,588	+		CCNA_01861	0.25	-1.7
1,995,588	+		CCNA_01861	0.25	+2.1
1,995,630	+		CCNA_01861	0.28	-1.3
1,995,711	-		CCNA_01861	0.35	-0.1
1,995,713	+		CCNA_01861	0.35	-1.1
1,995,723	+		CCNA_01861	0.36	+2.0
1,995,723	+		CCNA_01861	0.36	-0.1
1,995,723	+		CCNA_01861	0.36	+0.0
1,995,728	+		CCNA_01861	0.37	-0.2
1,995,728	+		CCNA_01861	0.37	+0.8
1,995,728	+		CCNA_01861	0.37	-0.8
1,995,731	-		CCNA_01861	0.37	-0.6
1,995,731	-		CCNA_01861	0.37	-0.5
1,995,731	-		CCNA_01861	0.37	+0.3
1,995,733	+		CCNA_01861	0.37	+2.4
1,995,866	+		CCNA_01861	0.48	+0.1
1,995,879	+		CCNA_01861	0.49	-0.4
1,995,971	+		CCNA_01861	0.57	-0.8
1,995,971	+		CCNA_01861	0.57	+0.9
1,995,979	-		CCNA_01861	0.58	+1.2
1,996,001	+		CCNA_01861	0.59	+4.4
1,996,001	+		CCNA_01861	0.59	+4.2
1,996,001	+		CCNA_01861	0.59	+4.5
1,996,002	-		CCNA_01861	0.60	+0.6
1,996,079	-		CCNA_01861	0.66	-1.0
1,996,089	-		CCNA_01861	0.67	+2.2
1,996,090	+		CCNA_01861	0.67	+0.6
1,996,098	-		CCNA_01861	0.68	+1.4
1,996,185	+		CCNA_01861	0.75	+0.1
1,996,195	+		CCNA_01861	0.76	-1.2
1,996,196	+		CCNA_01861	0.76	+0.8
1,996,204	-		CCNA_01861	0.76	+0.5
1,996,204	-		CCNA_01861	0.76	+0.4
1,996,206	+		CCNA_01861	0.77	-1.6
1,996,206	+		CCNA_01861	0.77	+0.9
1,996,229	+		CCNA_01861	0.79	-1.3
1,996,229	+		CCNA_01861	0.79	+0.2
1,996,229	+		CCNA_01861	0.79	-1.0
1,996,239	-		CCNA_01861	0.79	-0.9
1,996,254	-		CCNA_01861	0.81	+0.8
1,996,254	-		CCNA_01861	0.81	+2.2
1,996,257	+		CCNA_01861	0.81	-0.4
1,996,274	+		CCNA_01861	0.82	+1.2
1,996,343	+		CCNA_01861	0.88	-0.1
1,996,354	-		CCNA_01861	0.89	+1.7
1,996,389	+				+0.0
1,996,457	+				-0.8
1,996,465	-				+1.2
1,996,478	+				-0.1
1,996,486	-				+0.3
1,996,488	+				-0.1
1,996,518	-				+0.7
1,996,564	-				+0.6
1,996,606	+				-0.3
1,996,614	-				-0.5
1,996,614	-				+0.3
1,996,634	+				+1.5
1,996,634	-				+0.2
1,996,634	-				-0.1
1,996,669	+				-1.5
1,996,669	+				+0.8
1,996,669	+				-0.8
1,996,669	+				+0.9
1,996,671	+				-0.5
1,996,672	-				+1.3
1,996,672	-				-1.2
1,996,677	-				+1.9
1,996,677	-				+0.8
1,996,704	+				+0.2
1,996,712	-				+0.8
1,996,762	+				+0.4
1,996,763	-				-1.7
1,996,850	-				-0.6
1,996,866	+				-0.4
1,996,874	-				+0.3
1,996,899	+				+0.5
1,996,902	-				+0.5
1,996,907	-				+0.6
1,996,907	-				+0.9
1,996,939	-		CCNA_01862	0.16	+1.3
1,996,940	-		CCNA_01862	0.17	+0.2
1,997,001	+		CCNA_01862	0.37	-1.1
1,997,002	-		CCNA_01862	0.38	-1.3
1,997,007	-		CCNA_01862	0.39	-0.8
1,997,017	-		CCNA_01862	0.43	-0.6
1,997,055	+		CCNA_01862	0.56	+0.5
1,997,118	-		CCNA_01862	0.77	+0.2
1,997,167	+				+0.2
1,997,202	+				+1.9
1,997,258	+				+0.7
1,997,258	+				-1.2
1,997,266	-				+1.2
1,997,308	+				-0.0
1,997,315	+				-0.9
1,997,363	+		CCNA_01863	0.12	-0.4
1,997,382	-		CCNA_01863	0.13	-0.5
1,997,382	-		CCNA_01863	0.13	+0.3
1,997,407	+		CCNA_01863	0.15	+0.7
1,997,407	+		CCNA_01863	0.15	+1.1
1,997,407	+		CCNA_01863	0.15	+1.2
1,997,415	-		CCNA_01863	0.15	+1.4
1,997,415	-		CCNA_01863	0.15	-0.6
1,997,415	-		CCNA_01863	0.15	+1.3
1,997,415	-		CCNA_01863	0.15	+1.1
1,997,417	-		CCNA_01863	0.16	+0.9
1,997,428	-		CCNA_01863	0.16	+1.9
1,997,432	-		CCNA_01863	0.17	-1.4
1,997,442	-		CCNA_01863	0.17	-1.2
1,997,475	-		CCNA_01863	0.20	+1.0