Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01840

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,969,882	-		CCNA_01837	0.81	-0.1
1,969,933	-		CCNA_01837	0.86	+2.0
1,969,951	+		CCNA_01837	0.87	+1.9
1,969,987	-				+0.8
1,969,993	+				+1.3
1,969,996	-				+1.0
1,970,013	-				-1.1
1,970,064	+				-0.3
1,970,267	+				+0.5
1,970,381	+				-0.9
1,970,413	-				-0.0
1,970,425	+				+0.4
1,970,452	+				-0.2
1,970,532	+				-0.2
1,970,547	+				+0.8
1,970,548	-				+0.0
1,970,575	+				+0.1
1,970,575	+				+0.8
1,970,599	+				+0.8
1,970,609	+				-2.1
1,970,633	+				+0.9
1,970,633	+				+1.0
1,970,633	+				+2.3
1,970,633	+				+0.2
1,970,641	-				+1.3
1,970,641	-				+2.0
1,970,641	-				+1.4
1,970,651	-				-0.1
1,970,656	+				-1.2
1,970,656	+				-0.3
1,970,669	-				-0.7
1,970,674	-				-0.5
1,970,674	-				-0.1
1,970,751	-				+0.4
1,970,751	-				+3.0
1,970,760	-				-0.2
1,970,803	+				+0.7
1,970,811	-				+0.3
1,970,836	-				-0.2
1,970,846	+				+0.8
1,970,854	-				-0.1
1,970,854	-				-0.9
1,970,883	-				+0.8
1,970,909	-				+1.4
1,970,938	-				+3.4
1,971,104	-		CCNA_01840	0.15	+3.6
1,971,108	+		CCNA_01840	0.16	+1.6
1,971,139	-		CCNA_01840	0.18	+3.2
1,971,153	+		CCNA_01840	0.19	+1.0
1,971,195	-		CCNA_01840	0.22	+4.1
1,971,229	-		CCNA_01840	0.24	+4.1
1,971,229	-		CCNA_01840	0.24	+2.9
1,971,234	-		CCNA_01840	0.24	+3.3
1,971,249	-		CCNA_01840	0.25	+3.0
1,971,332	-		CCNA_01840	0.31	+3.1
1,971,349	-		CCNA_01840	0.32	+2.0
1,971,364	-		CCNA_01840	0.33	+5.1
1,971,364	-		CCNA_01840	0.33	+3.9
1,971,364	-				+4.6
1,971,413	+		CCNA_01840	0.37	+3.5
1,971,515	-		CCNA_01840	0.44	+3.6
1,971,571	-		CCNA_01840	0.48	+3.5
1,971,571	-		CCNA_01840	0.48	+3.2
1,971,579	-		CCNA_01840	0.48	+3.5
1,971,587	-		CCNA_01840	0.49	+3.7
1,971,587	-		CCNA_01840	0.49	+3.9
1,971,615	-		CCNA_01840	0.51	+3.4
1,971,662	-		CCNA_01840	0.54	+3.5
1,971,675	-		CCNA_01840	0.55	+3.5
1,971,705	-		CCNA_01840	0.57	+4.1
1,971,712	-		CCNA_01840	0.58	+3.3
1,971,780	+		CCNA_01840	0.62	+0.3
1,971,780	+		CCNA_01840	0.62	+1.3
1,971,788	-		CCNA_01840	0.63	+3.4
1,971,788	-		CCNA_01840	0.63	+4.6
1,971,788	-		CCNA_01840	0.63	+2.5
1,971,788	-		CCNA_01840	0.63	+3.6
1,971,788	-		CCNA_01840	0.63	+4.2
1,971,788	-		CCNA_01840	0.63	+3.6
1,971,903	-		CCNA_01840	0.71	+3.1
1,971,940	-		CCNA_01840	0.73	+3.6
1,971,975	-		CCNA_01840	0.76	+4.1
1,972,067	-		CCNA_01840	0.82	+3.7
1,972,078	-		CCNA_01840	0.83	+3.6
1,972,121	-		CCNA_01840	0.86	+4.1
1,972,197	-				+4.0
1,972,197	-				+3.1
1,972,225	-				+4.0
1,972,227	+				+0.8
1,972,235	-				+2.8
1,972,243	+				+2.0
1,972,243	+				-0.5
1,972,251	-				+2.1
1,972,316	-				-0.7
1,972,384	+				+0.7
1,972,392	-				+1.2
1,972,407	+				-0.3
1,972,415	-				-0.2
1,972,415	-				-0.2
1,972,415	-				+0.4
1,972,477	-				-0.7
1,972,498	+				+0.8
1,972,498	+				+1.3
1,972,506	-				-0.7
1,972,506	-				+0.3
1,972,506	-				+1.0
1,972,506	-				+1.7
1,972,509	+				+1.6
1,972,509	+				+0.5
1,972,512	-				+1.7
1,972,517	-				+1.8
1,972,519	-				+1.1
1,972,551	+				+2.0
1,972,559	-				-0.4
1,972,619	+				-1.4
1,972,621	+				-0.7
1,972,621	+				-1.1
1,972,664	-		CCNA_01841	0.11	-0.0
1,972,665	-		CCNA_01841	0.11	+0.5
1,972,675	-		CCNA_01841	0.11	+0.4
1,972,686	+		CCNA_01841	0.12	+1.0
1,972,692	+		CCNA_01841	0.12	-1.5
1,972,695	-		CCNA_01841	0.13	-1.5
1,972,706	-		CCNA_01841	0.13	-1.2
1,972,735	+		CCNA_01841	0.15	+0.5
1,972,741	+		CCNA_01841	0.15	-0.4
1,972,741	+		CCNA_01841	0.15	+0.4
1,972,757	+		CCNA_01841	0.16	-1.3
1,972,757	+		CCNA_01841	0.16	-2.1
1,972,779	+		CCNA_01841	0.18	+2.4
1,972,779	-		CCNA_01841	0.18	+0.2
1,972,787	-		CCNA_01841	0.18	+0.8
1,972,799	+		CCNA_01841	0.19	+0.7
1,972,817	-		CCNA_01841	0.20	+2.4
1,972,849	+		CCNA_01841	0.22	+0.6
1,972,857	-		CCNA_01841	0.23	+0.4
1,972,872	+		CCNA_01841	0.24	-0.6
1,972,939	+		CCNA_01841	0.28	-0.3
1,972,939	+		CCNA_01841	0.28	+1.0
1,972,947	-		CCNA_01841	0.28	+0.9
1,972,947	-		CCNA_01841	0.28	-0.1
1,973,004	-		CCNA_01841	0.32	-0.1
1,973,079	-		CCNA_01841	0.36	+0.7
1,973,103	-		CCNA_01841	0.38	+0.5
1,973,104	-		CCNA_01841	0.38	-0.4
1,973,283	+		CCNA_01841	0.49	+1.4
1,973,289	+		CCNA_01841	0.49	+1.5
1,973,289	+		CCNA_01841	0.49	+3.0
1,973,297	-		CCNA_01841	0.50	+0.1
1,973,319	+		CCNA_01841	0.51	+0.3