Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01834

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,964,050	-		CCNA_01833	0.40	+0.3
1,964,050	-		CCNA_01833	0.40	-0.3
1,964,054	+		CCNA_01833	0.40	+1.4
1,964,054	+		CCNA_01833	0.40	+0.5
1,964,054	+		CCNA_01833	0.40	+0.2
1,964,062	-		CCNA_01833	0.41	+0.5
1,964,066	+		CCNA_01833	0.41	+1.5
1,964,066	+		CCNA_01833	0.41	-0.4
1,964,066	+				+3.5
1,964,074	-		CCNA_01833	0.42	-1.2
1,964,148	+		CCNA_01833	0.47	+1.5
1,964,148	+		CCNA_01833	0.47	+1.2
1,964,161	-		CCNA_01833	0.48	+1.1
1,964,172	+		CCNA_01833	0.49	+2.0
1,964,210	-		CCNA_01833	0.51	+1.5
1,964,227	-		CCNA_01833	0.53	+0.7
1,964,252	-		CCNA_01833	0.54	-0.0
1,964,261	+		CCNA_01833	0.55	-1.1
1,964,269	-		CCNA_01833	0.56	-1.3
1,964,286	+		CCNA_01833	0.57	+1.5
1,964,289	-		CCNA_01833	0.57	+1.9
1,964,302	+		CCNA_01833	0.58	-0.3
1,964,320	-		CCNA_01833	0.59	-0.2
1,964,322	+		CCNA_01833	0.59	+0.2
1,964,322	+		CCNA_01833	0.59	-0.4
1,964,330	-		CCNA_01833	0.60	+3.0
1,964,357	-		CCNA_01833	0.62	+1.6
1,964,364	+		CCNA_01833	0.62	+0.1
1,964,372	-		CCNA_01833	0.63	-0.5
1,964,399	+		CCNA_01833	0.65	+3.5
1,964,399	+		CCNA_01833	0.65	-1.6
1,964,399	+		CCNA_01833	0.65	+0.7
1,964,402	-		CCNA_01833	0.65	+1.4
1,964,408	-		CCNA_01833	0.65	+3.0
1,964,435	+		CCNA_01833	0.67	+1.0
1,964,443	-		CCNA_01833	0.68	+1.4
1,964,443	-		CCNA_01833	0.68	-0.4
1,964,549	+		CCNA_01833	0.75	+1.5
1,964,557	+		CCNA_01833	0.76	-0.9
1,964,614	+		CCNA_01833	0.80	-0.9
1,964,618	+		CCNA_01833	0.80	+0.2
1,964,651	-		CCNA_01833	0.83	+1.7
1,964,651	-		CCNA_01833	0.83	-0.9
1,964,658	+		CCNA_01833	0.83	-0.2
1,964,717	-		CCNA_01833	0.87	-1.3
1,964,799	+				+1.7
1,964,890	+				+0.6
1,964,890	+				+1.6
1,964,958	-				+1.2
1,964,998	-				+0.2
1,965,013	-				-0.9
1,965,089	-				-0.2
1,965,116	-				-0.4
1,965,116	-				+2.1
1,965,156	+				+0.2
1,965,165	+				+1.1
1,965,251	-				+1.0
1,965,251	-				+1.2
1,965,252	+				-0.2
1,965,346	-		CCNA_01834	0.13	+0.8
1,965,385	+		CCNA_01834	0.15	-2.0
1,965,389	+		CCNA_01834	0.15	-1.1
1,965,407	-		CCNA_01834	0.16	+0.5
1,965,439	-		CCNA_01834	0.17	+1.6
1,965,467	+		CCNA_01834	0.18	+3.0
1,965,526	+		CCNA_01834	0.20	-1.8
1,965,569	+		CCNA_01834	0.22	-0.7
1,965,577	-		CCNA_01834	0.23	+0.7
1,965,577	-		CCNA_01834	0.23	-0.2
1,965,577	-		CCNA_01834	0.23	+0.9
1,965,606	+		CCNA_01834	0.24	+2.0
1,965,622	-		CCNA_01834	0.24	-2.4
1,965,640	+		CCNA_01834	0.25	+2.0
1,965,647	-		CCNA_01834	0.25	+4.2
1,965,671	+		CCNA_01834	0.26	+1.0
1,965,671	+		CCNA_01834	0.26	+0.1
1,965,679	-		CCNA_01834	0.27	+0.2
1,965,679	-		CCNA_01834	0.27	+1.4
1,965,679	-		CCNA_01834	0.27	+0.0
1,965,786	-		CCNA_01834	0.31	-1.2
1,965,797	+		CCNA_01834	0.31	+3.1
1,965,805	-		CCNA_01834	0.32	+0.2
1,965,839	-		CCNA_01834	0.33	-0.4
1,965,861	+		CCNA_01834	0.34	+0.7
1,966,021	+		CCNA_01834	0.40	+0.2
1,966,021	+		CCNA_01834	0.40	+0.6
1,966,021	+		CCNA_01834	0.40	-0.9
1,966,029	-		CCNA_01834	0.40	+0.7
1,966,040	-		CCNA_01834	0.41	-0.1
1,966,058	-		CCNA_01834	0.42	+1.2
1,966,063	-		CCNA_01834	0.42	-0.1
1,966,065	+		CCNA_01834	0.42	+0.2
1,966,068	-		CCNA_01834	0.42	+1.2
1,966,073	-		CCNA_01834	0.42	+1.6
1,966,073	-		CCNA_01834	0.42	+2.6
1,966,079	+		CCNA_01834	0.42	-0.2
1,966,088	-		CCNA_01834	0.43	+2.4
1,966,088	-		CCNA_01834	0.43	-0.4
1,966,124	+		CCNA_01834	0.44	-1.1
1,966,146	-		CCNA_01834	0.45	+0.6
1,966,214	-		CCNA_01834	0.48	+1.2
1,966,238	-		CCNA_01834	0.49	+1.3
1,966,257	-		CCNA_01834	0.49	+0.1
1,966,305	+		CCNA_01834	0.51	-0.2
1,966,313	-		CCNA_01834	0.52	+0.9
1,966,327	-		CCNA_01834	0.52	+0.9
1,966,347	-		CCNA_01834	0.53	+2.1
1,966,369	+		CCNA_01834	0.54	+1.4
1,966,369	+		CCNA_01834	0.54	+0.4
1,966,377	-		CCNA_01834	0.54	+1.4
1,966,377	-		CCNA_01834	0.54	-0.7
1,966,377	-		CCNA_01834	0.54	+0.7
1,966,377	-		CCNA_01834	0.54	+1.6
1,966,413	+		CCNA_01834	0.56	+0.9
1,966,454	-		CCNA_01834	0.57	+0.4
1,966,459	+		CCNA_01834	0.57	-0.6
1,966,464	+		CCNA_01834	0.58	+0.4
1,966,467	-		CCNA_01834	0.58	+1.3
1,966,467	-		CCNA_01834	0.58	+2.0
1,966,483	+		CCNA_01834	0.58	-0.3
1,966,483	+		CCNA_01834	0.58	+1.6
1,966,483	+		CCNA_01834	0.58	+0.1
1,966,483	+		CCNA_01834	0.58	+0.8
1,966,483	+		CCNA_01834	0.58	-1.0
1,966,483	+		CCNA_01834	0.58	-0.1
1,966,483	+		CCNA_01834	0.58	+0.1
1,966,483	+		CCNA_01834	0.58	-0.6
1,966,491	-		CCNA_01834	0.59	+1.2
1,966,491	-		CCNA_01834	0.59	+1.6
1,966,491	-		CCNA_01834	0.59	+0.9
1,966,491	-		CCNA_01834	0.59	+1.2
1,966,491	-		CCNA_01834	0.59	+0.2
1,966,491	-		CCNA_01834	0.59	+0.4
1,966,491	-		CCNA_01834	0.59	+0.0
1,966,494	+		CCNA_01834	0.59	-0.7
1,966,526	+		CCNA_01834	0.60	-0.8
1,966,541	-		CCNA_01834	0.61	+0.8
1,966,564	-		CCNA_01834	0.62	+0.1
1,966,584	+		CCNA_01834	0.62	-1.5
1,966,584	+		CCNA_01834	0.62	+2.1
1,966,592	-		CCNA_01834	0.63	+0.8
1,966,605	-		CCNA_01834	0.63	+1.7
1,966,605	-		CCNA_01834	0.63	+1.3
1,966,637	-		CCNA_01834	0.65	+1.6
1,966,676	+		CCNA_01834	0.66	+0.3
1,966,720	-		CCNA_01834	0.68	+1.4
1,966,739	-		CCNA_01834	0.69	+1.3
1,966,797	+		CCNA_01834	0.71	-0.9
1,966,805	-		CCNA_01834	0.71	+0.2
1,966,815	-		CCNA_01834	0.72	+0.7
1,966,847	-		CCNA_01834	0.73	-0.1
1,966,850	-		CCNA_01834	0.73	+2.5
1,966,852	-		CCNA_01834	0.73	+0.6
1,966,906	-		CCNA_01834	0.75	+0.3
1,966,908	+		CCNA_01834	0.75	-0.4
1,966,947	+		CCNA_01834	0.77	-1.4
1,967,011	+		CCNA_01834	0.79	-0.1
1,967,026	+		CCNA_01834	0.80	-0.6
1,967,034	-		CCNA_01834	0.80	-0.3
1,967,034	-		CCNA_01834	0.80	+0.8
1,967,058	-		CCNA_01834	0.81	+0.9
1,967,058	-		CCNA_01834	0.81	-0.5
1,967,058	-		CCNA_01834	0.81	-1.5
1,967,058	-		CCNA_01834	0.81	-1.1
1,967,075	+		CCNA_01834	0.82	+1.6
1,967,083	-		CCNA_01834	0.82	+1.3
1,967,130	-		CCNA_01834	0.84	+2.2
1,967,158	+		CCNA_01834	0.85	+0.5
1,967,184	-		CCNA_01834	0.86	+0.8
1,967,241	+		CCNA_01834	0.88	+0.0
1,967,299	-				+0.8
1,967,380	+				+0.7
1,967,441	+				-0.1
1,967,449	-				+1.8
1,967,451	+				+0.2
1,967,454	-				+0.2
1,967,511	+				+0.7
1,967,511	+				+0.6
1,967,511	+				+0.3
1,967,511	+				+1.2
1,967,547	+				-0.0
1,967,584	+				+0.1
1,967,587	-				-0.3
1,967,642	+		CCNA_01835	0.17	-0.9
1,967,644	-		CCNA_01835	0.17	-0.5
1,967,673	-		CCNA_01835	0.21	+0.1
1,967,713	-		CCNA_01835	0.27	+1.3
1,967,730	+		CCNA_01835	0.29	+0.9
1,967,735	+		CCNA_01835	0.30	-1.5
1,967,735	+		CCNA_01835	0.30	+0.1
1,967,740	+		CCNA_01835	0.31	+2.2
1,967,742	+		CCNA_01835	0.31	+0.1
1,967,743	-		CCNA_01835	0.31	-1.1
1,967,743	-		CCNA_01835	0.31	+0.5
1,967,743	-		CCNA_01835	0.31	+0.8
1,967,743	-		CCNA_01835	0.31	+0.5
1,967,760	+		CCNA_01835	0.34	+0.2
1,967,768	-		CCNA_01835	0.35	+1.1
1,967,812	+		CCNA_01835	0.41	+0.8
1,967,817	+		CCNA_01835	0.42	-1.0
1,967,879	-		CCNA_01835	0.51	+1.1
1,967,890	-		CCNA_01835	0.53	-1.6
1,967,897	-		CCNA_01835	0.54	+1.0
1,967,924	+		CCNA_01835	0.58	+1.2
1,967,932	-		CCNA_01835	0.59	-1.2
1,967,953	-		CCNA_01835	0.62	+1.8
1,967,978	+		CCNA_01835	0.66	+0.0
1,968,015	-		CCNA_01835	0.71	+0.9
1,968,031	-		CCNA_01835	0.73	+0.2
1,968,102	-		CCNA_01835	0.84	-0.3
1,968,120	-		CCNA_01835	0.86	+0.6
1,968,157	+				+0.8
1,968,161	-				-1.1
1,968,166	-				-0.2
1,968,166	-				-0.5
1,968,242	-				+0.4
1,968,261	-				-0.1
1,968,271	-				-0.6
1,968,274	+				-0.4
1,968,362	+		CCNA_01836	0.14	+0.8
1,968,434	+		CCNA_01836	0.26	-0.9
1,968,436	+		CCNA_01836	0.26	-0.9
1,968,436	+		CCNA_01836	0.26	+0.9
1,968,444	-		CCNA_01836	0.27	-0.0
1,968,444	-		CCNA_01836	0.27	+1.6
1,968,444	-		CCNA_01836	0.27	-0.6