Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01826

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,950,314	+				-0.3
1,950,314	+				+0.4
1,950,332	+				-1.2
1,950,340	-				+2.4
1,950,371	+		CCNA_01824	0.11	+0.8
1,950,371	+		CCNA_01824	0.11	+0.6
1,950,379	-		CCNA_01824	0.13	+0.6
1,950,381	+		CCNA_01824	0.14	-1.3
1,950,381	+		CCNA_01824	0.14	-0.6
1,950,389	-		CCNA_01824	0.16	+1.3
1,950,389	-		CCNA_01824	0.16	+0.6
1,950,438	-		CCNA_01824	0.31	+0.1
1,950,448	-		CCNA_01824	0.34	+0.8
1,950,448	-		CCNA_01824	0.34	+1.2
1,950,450	+		CCNA_01824	0.35	-2.3
1,950,458	-		CCNA_01824	0.37	+1.3
1,950,463	-		CCNA_01824	0.38	+0.9
1,950,463	-		CCNA_01824	0.38	-1.0
1,950,483	-		CCNA_01824	0.44	-0.5
1,950,534	+		CCNA_01824	0.60	-1.2
1,950,551	+		CCNA_01824	0.65	+0.3
1,950,579	+		CCNA_01824	0.73	+0.7
1,950,585	+		CCNA_01824	0.75	+1.0
1,950,593	-		CCNA_01824	0.77	+0.6
1,950,597	+		CCNA_01824	0.78	+0.8
1,950,619	-		CCNA_01824	0.85	-0.0
1,950,619	-		CCNA_01824	0.85	+1.5
1,950,619	-		CCNA_01824	0.85	-0.2
1,950,642	+				-0.5
1,950,656	-				-0.5
1,950,677	-				+1.2
1,950,716	+				-1.1
1,950,749	+				+0.6
1,950,749	+				-0.6
1,950,752	-				-2.1
1,950,752	-				-1.4
1,950,754	+				-0.0
1,950,769	+				+1.2
1,950,779	+				-0.6
1,950,779	+				+1.6
1,950,787	-				-0.8
1,950,794	-				+0.7
1,950,824	-				+0.9
1,950,828	+				+1.8
1,950,828	+				+0.1
1,950,828	+				+0.0
1,950,828	+				-0.5
1,950,836	-				-0.0
1,950,836	-				+0.8
1,950,853	-				-0.8
1,950,883	+				+0.9
1,950,883	+				-0.5
1,950,891	-				+1.6
1,950,891	-				-0.3
1,950,898	-				-0.7
1,950,921	-				-1.0
1,950,941	+				+0.2
1,951,024	-				+0.4
1,951,062	+				+0.4
1,951,116	+				+3.0
1,951,124	-				+0.8
1,951,145	-				+2.3
1,951,152	+				+3.6
1,951,152	+				+2.8
1,951,235	-				+1.8
1,951,283	+				+2.0
1,951,310	+				+1.1
1,951,310	+				+1.8
1,951,318	-				+0.3
1,951,318	-				+3.6
1,951,320	+				+1.8
1,951,320	+				+2.7
1,951,325	+				+4.3
1,951,325	+				+1.5
1,951,328	-				+1.0
1,951,333	-				-0.4
1,951,355	+				+2.3
1,951,429	+				+3.0
1,951,449	+				+1.5
1,951,449	+				+2.8
1,951,468	+				-0.7
1,951,487	+				+1.1
1,951,487	+				+2.0
1,951,495	-		CCNA_01826	0.10	+1.0
1,951,558	+		CCNA_01826	0.13	+1.5
1,951,607	-		CCNA_01826	0.16	+1.7
1,951,640	-		CCNA_01826	0.18	+2.8
1,951,645	-				+1.4
1,951,693	-		CCNA_01826	0.20	-0.3
1,951,728	+		CCNA_01826	0.22	+2.2
1,951,733	+		CCNA_01826	0.22	+2.7
1,951,825	-		CCNA_01826	0.27	+0.8
1,951,827	-		CCNA_01826	0.27	+0.4
1,951,838	+		CCNA_01826	0.28	+1.9
1,951,923	+		CCNA_01826	0.32	+1.3
1,951,924	+		CCNA_01826	0.32	+2.7
1,951,932	-		CCNA_01826	0.32	+1.6
1,952,044	-		CCNA_01826	0.38	+1.2
1,952,051	+		CCNA_01826	0.39	+2.4
1,952,133	+		CCNA_01826	0.43	+0.4
1,952,133	+		CCNA_01826	0.43	+1.8
1,952,141	-		CCNA_01826	0.43	+1.6
1,952,308	+		CCNA_01826	0.52	+3.2
1,952,378	+		CCNA_01826	0.55	+2.4
1,952,402	+		CCNA_01826	0.57	+2.6
1,952,410	-		CCNA_01826	0.57	-0.0
1,952,440	+		CCNA_01826	0.58	+2.5
1,952,457	+		CCNA_01826	0.59	+2.5
1,952,464	-		CCNA_01826	0.60	+0.1
1,952,514	+		CCNA_01826	0.62	+2.2
1,952,580	+		CCNA_01826	0.66	+2.2
1,952,643	+		CCNA_01826	0.69	+3.2
1,952,643	+		CCNA_01826	0.69	+3.3
1,952,693	-		CCNA_01826	0.71	+0.2
1,952,701	+		CCNA_01826	0.72	+2.6
1,952,766	+		CCNA_01826	0.75	+1.6
1,952,806	+		CCNA_01826	0.77	+1.2
1,952,839	+		CCNA_01826	0.79	+3.6
1,952,839	+		CCNA_01826	0.79	+2.3
1,952,845	+		CCNA_01826	0.79	+2.6
1,952,853	+		CCNA_01826	0.80	+1.3
1,952,890	-		CCNA_01826	0.82	+0.2
1,952,914	-		CCNA_01826	0.83	+0.6
1,952,999	+		CCNA_01826	0.87	+3.8
1,953,048	-		CCNA_01826	0.90	+1.5
1,953,060	+				+2.3
1,953,065	+				+3.3
1,953,094	-				+0.4
1,953,138	+				+4.5
1,953,181	+				+3.3
1,953,191	+				+4.0
1,953,191	+				+3.5
1,953,199	-				+0.9
1,953,244	+				+4.0
1,953,244	+				+4.2
1,953,251	+				+4.0
1,953,260	+				+4.5
1,953,261	+				+4.1
1,953,304	-				+0.9
1,953,339	-				+0.4
1,953,435	-				+1.3
1,953,435	-				+1.8
1,953,435	-				+0.3
1,953,491	-		CCNA_01827	0.12	-1.3
1,953,544	-		CCNA_01827	0.16	+1.7
1,953,544	-		CCNA_01827	0.16	+2.0
1,953,603	+		CCNA_01827	0.20	+2.4
1,953,603	+		CCNA_01827	0.20	+2.0
1,953,673	-		CCNA_01827	0.25	+0.3
1,953,704	-		CCNA_01827	0.27	+0.4
1,953,776	+		CCNA_01827	0.32	+1.9
1,953,805	+		CCNA_01827	0.34	+2.1
1,953,887	-		CCNA_01827	0.39	-1.3
1,953,914	+		CCNA_01827	0.41	+2.7
1,953,982	+		CCNA_01827	0.46	+2.9
1,954,038	-		CCNA_01827	0.50	-0.5
1,954,058	+		CCNA_01827	0.51	+3.0
1,954,079	+		CCNA_01827	0.52	+3.3
1,954,134	+		CCNA_01827	0.56	+3.1
1,954,142	-		CCNA_01827	0.57	+0.1