Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01820

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,945,277	+		CCNA_01818	0.39	+1.7
1,945,280	-		CCNA_01818	0.39	+1.6
1,945,296	+		CCNA_01818	0.41	+0.6
1,945,318	+		CCNA_01818	0.44	+0.4
1,945,318	+		CCNA_01818	0.44	+1.7
1,945,326	-		CCNA_01818	0.45	+0.8
1,945,336	-		CCNA_01818	0.46	+2.6
1,945,347	+		CCNA_01818	0.47	-0.6
1,945,422	-		CCNA_01818	0.56	+1.3
1,945,467	+		CCNA_01818	0.61	+0.8
1,945,467	+		CCNA_01818	0.61	+2.7
1,945,475	-		CCNA_01818	0.62	+0.0
1,945,482	+		CCNA_01818	0.63	+1.7
1,945,488	-		CCNA_01818	0.63	-0.5
1,945,517	+		CCNA_01818	0.67	-0.1
1,945,575	+		CCNA_01818	0.73	+0.8
1,945,583	-		CCNA_01818	0.74	+0.4
1,945,585	+		CCNA_01818	0.75	-0.8
1,945,627	+		CCNA_01818	0.79	+1.4
1,945,664	-		CCNA_01818	0.84	-0.5
1,945,696	-		CCNA_01818	0.87	+1.4
1,945,769	+				+3.0
1,945,769	+				+2.2
1,945,789	+				+1.9
1,945,898	+				+3.0
1,945,923	+				+1.6
1,946,162	+		CCNA_01819	0.80	+2.4
1,946,211	+				+3.2
1,946,211	+				+2.7
1,946,211	+				+2.9
1,946,211	+				+3.1
1,946,211	+				+3.2
1,946,211	+				+3.1
1,946,219	-				+0.5
1,946,219	-				+0.9
1,946,219	-				-1.4
1,946,219	-				+1.6
1,946,370	-		CCNA_01820	0.11	+1.4
1,946,374	+		CCNA_01820	0.11	+2.2
1,946,410	-		CCNA_01820	0.14	-0.2
1,946,447	+		CCNA_01820	0.17	+1.6
1,946,447	+		CCNA_01820	0.17	-0.5
1,946,447	+		CCNA_01820	0.17	+0.8
1,946,447	+		CCNA_01820	0.17	+1.3
1,946,447	+		CCNA_01820	0.17	+1.5
1,946,454	+		CCNA_01820	0.17	+0.8
1,946,455	-		CCNA_01820	0.17	+0.9
1,946,455	-		CCNA_01820	0.17	+0.6
1,946,455	-				+2.0
1,946,455	-		CCNA_01820	0.17	-0.7
1,946,455	-		CCNA_01820	0.17	-1.5
1,946,462	-		CCNA_01820	0.18	-0.1
1,946,516	+		CCNA_01820	0.22	+0.8
1,946,516	+		CCNA_01820	0.22	+1.4
1,946,516	+		CCNA_01820	0.22	+1.9
1,946,516	+		CCNA_01820	0.22	+2.1
1,946,558	-		CCNA_01820	0.25	+0.1
1,946,580	+		CCNA_01820	0.27	+1.4
1,946,588	-		CCNA_01820	0.27	+1.2
1,946,610	+		CCNA_01820	0.29	+0.9
1,946,650	+		CCNA_01820	0.32	+1.4
1,946,653	-		CCNA_01820	0.32	-2.0
1,946,653	-		CCNA_01820	0.32	+0.1
1,946,653	-		CCNA_01820	0.32	+1.3
1,946,656	+		CCNA_01820	0.32	+1.4
1,946,676	+		CCNA_01820	0.34	+0.8
1,946,681	+				+3.6
1,946,681	+		CCNA_01820	0.34	+1.3
1,946,760	-		CCNA_01820	0.40	-1.4
1,946,792	+		CCNA_01820	0.42	+0.4
1,946,831	+		CCNA_01820	0.45	+3.4
1,946,893	-		CCNA_01820	0.50	+3.1
1,946,926	+		CCNA_01820	0.52	-0.4
1,946,936	+		CCNA_01820	0.53	+2.9
1,946,946	+		CCNA_01820	0.54	+2.0
1,946,947	-		CCNA_01820	0.54	+0.9
1,946,961	+		CCNA_01820	0.55	+1.2
1,946,983	+		CCNA_01820	0.57	+1.4
1,946,983	+		CCNA_01820	0.57	+2.6
1,947,080	+		CCNA_01820	0.64	+2.6
1,947,108	+		CCNA_01820	0.66	+2.4
1,947,134	+		CCNA_01820	0.68	+1.8
1,947,147	+		CCNA_01820	0.69	+2.0
1,947,169	-		CCNA_01820	0.71	+1.2
1,947,188	-		CCNA_01820	0.72	+0.4
1,947,203	+		CCNA_01820	0.73	+2.6
1,947,211	-		CCNA_01820	0.74	+1.4
1,947,240	-		CCNA_01820	0.76	+2.4
1,947,242	+		CCNA_01820	0.76	+1.3
1,947,245	+		CCNA_01820	0.76	+2.1
1,947,318	+		CCNA_01820	0.82	+2.4
1,947,331	-		CCNA_01820	0.83	+0.3
1,947,333	-		CCNA_01820	0.83	-1.5
1,947,391	-		CCNA_01820	0.87	-1.2
1,947,396	+		CCNA_01820	0.87	+2.6
1,947,401	+		CCNA_01820	0.88	+2.1
1,947,409	-		CCNA_01820	0.88	+4.6
1,947,424	-		CCNA_01820	0.90	-0.4
1,947,451	-				-1.1
1,947,498	+				+1.8
1,947,499	-				+0.4
1,947,542	+				+1.9
1,947,542	+				+1.1
1,947,543	-				+1.0
1,947,550	-				+0.1
1,947,550	-				-1.0
1,947,564	+				+1.6
1,947,587	-				+0.8
1,947,587	-				+1.2
1,947,625	+				+0.9
1,947,625	+				+0.4
1,947,633	-				-2.3
1,947,633	-				-0.4
1,947,706	+		CCNA_01821	0.18	+0.6
1,947,760	+		CCNA_01821	0.24	+0.9
1,947,912	-		CCNA_01821	0.43	+1.0
1,947,963	-		CCNA_01821	0.49	+0.2
1,947,968	-		CCNA_01821	0.49	-0.7
1,947,968	-		CCNA_01821	0.49	-0.5
1,947,974	-		CCNA_01821	0.50	+2.2
1,947,980	+		CCNA_01821	0.51	-2.6
1,947,988	-		CCNA_01821	0.52	-1.3
1,948,012	+		CCNA_01821	0.55	+1.2
1,948,025	-		CCNA_01821	0.56	-0.4
1,948,033	-		CCNA_01821	0.57	-0.8
1,948,059	-		CCNA_01821	0.60	+0.4
1,948,088	-		CCNA_01821	0.64	-0.4
1,948,114	-		CCNA_01821	0.67	+0.7
1,948,156	+		CCNA_01821	0.72	+0.5
1,948,166	+		CCNA_01821	0.73	+1.4
1,948,176	+		CCNA_01821	0.74	+0.2
1,948,176	+		CCNA_01821	0.74	+2.2
1,948,176	+		CCNA_01821	0.74	+1.0
1,948,176	+		CCNA_01821	0.74	-0.7
1,948,179	-		CCNA_01821	0.75	-0.0
1,948,184	-		CCNA_01821	0.75	+1.0
1,948,220	+		CCNA_01821	0.80	+1.6
1,948,262	+		CCNA_01821	0.85	+0.6
1,948,275	-		CCNA_01821	0.86	-1.0
1,948,306	+				+2.0
1,948,327	+				+0.1
1,948,402	+				+1.8
1,948,409	+				-1.3
1,948,518	+		CCNA_01822	0.12	+0.9
1,948,525	-		CCNA_01822	0.12	+0.9
1,948,559	-		CCNA_01822	0.15	+1.2
1,948,559	-		CCNA_01822	0.15	+0.6