Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01815

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,938,867	+		CCNA_01814	0.14	+3.7
1,938,889	+		CCNA_01814	0.16	+4.2
1,938,912	+		CCNA_01814	0.18	+3.0
1,938,924	+		CCNA_01814	0.19	+4.0
1,938,941	+		CCNA_01814	0.21	+2.6
1,938,977	+		CCNA_01814	0.24	-0.5
1,939,085	+		CCNA_01814	0.34	+1.8
1,939,139	+		CCNA_01814	0.38	+4.0
1,939,166	-		CCNA_01814	0.41	-0.4
1,939,210	+		CCNA_01814	0.45	+4.1
1,939,215	+		CCNA_01814	0.45	+3.8
1,939,298	+		CCNA_01814	0.53	+4.0
1,939,298	+		CCNA_01814	0.53	+4.4
1,939,298	+		CCNA_01814	0.53	+3.3
1,939,298	+		CCNA_01814	0.53	+3.9
1,939,298	+		CCNA_01814	0.53	+3.8
1,939,316	-		CCNA_01814	0.54	+0.3
1,939,369	-		CCNA_01814	0.59	+1.2
1,939,381	+		CCNA_01814	0.60	+3.9
1,939,398	+		CCNA_01814	0.61	+4.1
1,939,400	+		CCNA_01814	0.62	+3.5
1,939,422	+		CCNA_01814	0.64	+3.7
1,939,441	+		CCNA_01814	0.65	+2.8
1,939,454	-		CCNA_01814	0.66	+2.3
1,939,456	+		CCNA_01814	0.67	+3.8
1,939,515	+		CCNA_01814	0.72	+4.2
1,939,554	+		CCNA_01814	0.75	+4.3
1,939,684	+		CCNA_01814	0.87	+3.3
1,939,689	+		CCNA_01814	0.87	+3.8
1,939,697	-		CCNA_01814	0.88	+0.6
1,939,697	-		CCNA_01814	0.88	+1.3
1,939,869	+				+3.8
1,939,872	+				+3.7
1,939,897	-				+1.0
1,939,946	+				+4.2
1,939,977	+		CCNA_01815	0.11	+4.6
1,939,994	+		CCNA_01815	0.12	+4.3
1,939,994	+		CCNA_01815	0.12	+4.1
1,940,050	+		CCNA_01815	0.16	+4.5
1,940,057	+		CCNA_01815	0.16	+4.9
1,940,090	+		CCNA_01815	0.19	+3.8
1,940,101	+		CCNA_01815	0.19	+4.2
1,940,159	-		CCNA_01815	0.23	+2.6
1,940,161	+		CCNA_01815	0.24	+4.8
1,940,203	+		CCNA_01815	0.27	+5.2
1,940,227	-		CCNA_01815	0.28	+1.6
1,940,257	+		CCNA_01815	0.30	+5.0
1,940,287	+		CCNA_01815	0.32	+4.0
1,940,290	+		CCNA_01815	0.33	+4.4
1,940,311	-		CCNA_01815	0.34	+0.7
1,940,327	+		CCNA_01815	0.35	+4.4
1,940,368	-		CCNA_01815	0.38	+0.2
1,940,385	+		CCNA_01815	0.39	+3.4
1,940,425	-		CCNA_01815	0.42	+0.9
1,940,449	+		CCNA_01815	0.44	+4.0
1,940,449	+		CCNA_01815	0.44	+3.4
1,940,457	-		CCNA_01815	0.44	+1.1
1,940,464	+		CCNA_01815	0.45	+4.2
1,940,464	+		CCNA_01815	0.45	+3.7
1,940,487	+		CCNA_01815	0.46	+4.4
1,940,555	+		CCNA_01815	0.51	+4.1
1,940,572	-		CCNA_01815	0.52	+1.0
1,940,605	+		CCNA_01815	0.55	+4.2
1,940,652	+		CCNA_01815	0.58	+3.6
1,940,689	-		CCNA_01815	0.61	-0.0
1,940,689	-		CCNA_01815	0.61	+0.5
1,940,696	+		CCNA_01815	0.61	+4.0
1,940,696	+		CCNA_01815	0.61	+4.1
1,940,710	+		CCNA_01815	0.62	+4.3
1,940,741	+		CCNA_01815	0.64	+3.6
1,940,788	+		CCNA_01815	0.68	+4.3
1,940,815	+		CCNA_01815	0.70	+4.9
1,940,823	-		CCNA_01815	0.70	+0.2
1,940,837	+		CCNA_01815	0.71	+4.3
1,940,855	+		CCNA_01815	0.72	+4.6
1,940,919	+		CCNA_01815	0.77	+4.0
1,940,929	+		CCNA_01815	0.78	+4.4
1,941,008	+		CCNA_01815	0.83	+4.5
1,941,063	-		CCNA_01815	0.87	+2.3
1,941,063	-		CCNA_01815	0.87	+1.6
1,941,103	+		CCNA_01815	0.90	+4.3
1,941,147	+				+3.2
1,941,184	+				+4.2
1,941,204	-				+0.5
1,941,213	+				+1.6
1,941,214	-				+2.0
1,941,224	+				+3.5
1,941,302	+				+2.0
1,941,331	-				+0.8
1,941,336	+				-1.0
1,941,431	+				+0.5
1,941,432	+				+0.8
1,941,463	+				+0.8
1,941,523	+				+0.5
1,941,569	+		CCNA_01816	0.11	+1.4
1,941,596	+		CCNA_01816	0.13	+0.6
1,941,604	-		CCNA_01816	0.13	+1.4
1,941,615	+		CCNA_01816	0.14	-0.8
1,941,683	+		CCNA_01816	0.17	+1.3
1,941,683	+		CCNA_01816	0.17	+0.5
1,941,683	+		CCNA_01816	0.17	+1.1
1,941,734	+		CCNA_01816	0.19	-0.2
1,941,734	+		CCNA_01816	0.19	+0.1
1,941,734	+		CCNA_01816	0.19	+0.5
1,941,734	+		CCNA_01816	0.19	+1.1
1,941,742	-		CCNA_01816	0.19	+2.0
1,941,797	-		CCNA_01816	0.22	+0.9
1,941,805	-		CCNA_01816	0.22	+1.2
1,941,832	+		CCNA_01816	0.23	+0.4
1,941,832	+		CCNA_01816	0.23	-2.1
1,941,836	+		CCNA_01816	0.23	+0.9
1,941,840	-		CCNA_01816	0.24	-0.2
1,941,892	-		CCNA_01816	0.26	+0.2
1,941,892	-		CCNA_01816	0.26	-0.8
1,941,895	+		CCNA_01816	0.26	+0.9
1,941,900	+		CCNA_01816	0.26	+0.9
1,941,946	+		CCNA_01816	0.28	+0.5
1,942,041	+		CCNA_01816	0.32	+1.2
1,942,065	-		CCNA_01816	0.34	+0.6
1,942,079	+		CCNA_01816	0.34	-0.3
1,942,079	+		CCNA_01816	0.34	+0.5
1,942,084	+		CCNA_01816	0.34	-1.4
1,942,085	+		CCNA_01816	0.34	+0.1
1,942,085	+		CCNA_01816	0.34	+2.0
1,942,128	+		CCNA_01816	0.36	+0.8
1,942,201	+		CCNA_01816	0.40	+0.5
1,942,202	-		CCNA_01816	0.40	+0.7
1,942,227	+		CCNA_01816	0.41	+3.7
1,942,227	+		CCNA_01816	0.41	+1.6
1,942,243	+		CCNA_01816	0.41	+1.4