Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01780

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,905,983	+		CCNA_01778	0.60	+1.5
1,906,005	-		CCNA_01778	0.62	+0.1
1,906,011	-		CCNA_01778	0.62	-0.6
1,906,019	-		CCNA_01778	0.63	+2.1
1,906,028	+		CCNA_01778	0.64	+2.0
1,906,134	+		CCNA_01778	0.72	+1.0
1,906,159	+		CCNA_01778	0.74	+2.7
1,906,159	+		CCNA_01778	0.74	+0.5
1,906,161	+		CCNA_01778	0.74	+1.3
1,906,200	+		CCNA_01778	0.77	+0.3
1,906,202	+		CCNA_01778	0.77	+1.9
1,906,220	+		CCNA_01778	0.79	+1.2
1,906,220	+		CCNA_01778	0.79	+1.9
1,906,220	+		CCNA_01778	0.79	+1.7
1,906,227	+		CCNA_01778	0.79	+1.6
1,906,241	-		CCNA_01778	0.80	-1.0
1,906,248	-		CCNA_01778	0.81	+0.1
1,906,253	-		CCNA_01778	0.81	+0.3
1,906,270	+		CCNA_01778	0.82	+1.7
1,906,351	+		CCNA_01778	0.89	+2.8
1,906,353	+		CCNA_01778	0.89	+0.7
1,906,359	+		CCNA_01778	0.89	+1.1
1,906,367	-				+0.8
1,906,369	-				+0.5
1,906,485	-				-0.7
1,906,500	+				-0.9
1,906,562	-		CCNA_01779	0.12	+0.2
1,906,567	+		CCNA_01779	0.14	-0.1
1,906,576	-		CCNA_01779	0.17	+1.4
1,906,627	-		CCNA_01779	0.36	-0.1
1,906,666	-		CCNA_01779	0.51	-0.4
1,906,694	-		CCNA_01779	0.61	+0.4
1,906,694	-		CCNA_01779	0.61	-0.1
1,906,699	-		CCNA_01779	0.63	-1.8
1,906,746	+		CCNA_01779	0.80	+0.2
1,906,773	-				+1.2
1,906,779	+				+0.3
1,906,787	-				+1.1
1,906,802	+				-1.3
1,906,802	+				-1.5
1,906,808	-				-0.5
1,906,841	+				+0.4
1,906,843	-				+1.2
1,906,961	+				+1.1
1,906,974	-				+1.9
1,906,974	-				+2.3
1,907,052	+				+1.7
1,907,089	-				+3.3
1,907,109	+		CCNA_01780	0.10	+2.7
1,907,109	-		CCNA_01780	0.10	+4.2
1,907,117	-		CCNA_01780	0.11	+3.5
1,907,186	+		CCNA_01780	0.15	+2.1
1,907,189	-		CCNA_01780	0.16	+3.1
1,907,209	+		CCNA_01780	0.17	+1.8
1,907,284	+		CCNA_01780	0.22	+1.9
1,907,306	+		CCNA_01780	0.23	+1.3
1,907,306	+		CCNA_01780	0.23	+1.6
1,907,336	-		CCNA_01780	0.25	+2.6
1,907,430	+		CCNA_01780	0.32	-0.8
1,907,498	-		CCNA_01780	0.36	+2.4
1,907,512	+		CCNA_01780	0.37	+1.6
1,907,520	-		CCNA_01780	0.38	+3.9
1,907,521	-		CCNA_01780	0.38	+3.5
1,907,555	+		CCNA_01780	0.40	+0.6
1,907,563	-		CCNA_01780	0.41	+3.2
1,907,648	+		CCNA_01780	0.46	+1.8
1,907,656	-		CCNA_01780	0.47	+3.7
1,907,661	-				+3.1
1,907,694	+		CCNA_01780	0.49	+2.2
1,907,705	+		CCNA_01780	0.50	+2.0
1,907,713	-		CCNA_01780	0.51	+3.4
1,907,737	+		CCNA_01780	0.52	+2.1
1,907,737	+		CCNA_01780	0.52	+2.1
1,907,748	+		CCNA_01780	0.53	+1.9
1,907,809	-		CCNA_01780	0.57	+3.8
1,907,814	+		CCNA_01780	0.57	+1.9
1,907,822	-		CCNA_01780	0.58	+3.3
1,907,879	+		CCNA_01780	0.62	+2.6
1,907,955	+		CCNA_01780	0.67	+2.2
1,907,957	-		CCNA_01780	0.67	+3.4
1,908,009	+		CCNA_01780	0.70	+3.7
1,908,018	+		CCNA_01780	0.71	-0.1
1,908,026	-		CCNA_01780	0.71	+3.5
1,908,031	-		CCNA_01780	0.72	+3.3
1,908,037	-		CCNA_01780	0.72	+4.4
1,908,042	-		CCNA_01780	0.73	+4.0
1,908,083	-		CCNA_01780	0.75	+4.6
1,908,100	+		CCNA_01780	0.76	+1.3
1,908,183	-		CCNA_01780	0.82	+4.4
1,908,215	+		CCNA_01780	0.84	+2.4
1,908,235	+		CCNA_01780	0.85	+2.1
1,908,235	+		CCNA_01780	0.85	+3.3
1,908,235	+		CCNA_01780	0.85	+1.5
1,908,235	+		CCNA_01780	0.85	+2.1
1,908,235	+		CCNA_01780	0.85	+2.7
1,908,243	-		CCNA_01780	0.86	+3.7
1,908,243	-		CCNA_01780	0.86	+3.6
1,908,243	-		CCNA_01780	0.86	+1.1
1,908,243	-		CCNA_01780	0.86	+3.2
1,908,253	-		CCNA_01780	0.87	+2.3
1,908,253	-		CCNA_01780	0.87	+3.4
1,908,305	+				+1.8
1,908,313	-				+3.6
1,908,364	-				+3.4
1,908,364	-				+3.1
1,908,372	+				+2.8
1,908,390	-				+2.5
1,908,390	-				+1.5
1,908,402	+				+2.5
1,908,457	-				+1.6
1,908,468	-				+1.3
1,908,521	+				+2.1
1,908,562	+				-1.5
1,908,575	-				+1.7
1,908,649	+		CCNA_01781	0.27	-0.6
1,908,649	+		CCNA_01781	0.27	+2.0
1,908,652	-		CCNA_01781	0.27	+0.4
1,908,654	+		CCNA_01781	0.28	+1.6
1,908,656	+		CCNA_01781	0.28	-1.6
1,908,671	-		CCNA_01781	0.32	-0.1
1,908,671	-		CCNA_01781	0.32	+1.8
1,908,737	-		CCNA_01781	0.49	+0.8
1,908,762	-		CCNA_01781	0.55	-0.4
1,908,767	+		CCNA_01781	0.56	-0.9
1,908,767	+		CCNA_01781	0.56	+0.3
1,908,767	+		CCNA_01781	0.56	+1.3
1,908,768	-		CCNA_01781	0.57	-1.6
1,908,825	-		CCNA_01781	0.71	+0.4
1,908,841	+		CCNA_01781	0.75	+0.9
1,908,841	+		CCNA_01781	0.75	+0.5
1,908,849	-		CCNA_01781	0.77	-0.6
1,908,849	-		CCNA_01781	0.77	+2.9
1,908,849	-		CCNA_01781	0.77	-0.2
1,908,939	-				+2.3
1,908,997	-				-0.7
1,908,997	-				-0.7
1,909,078	-				+1.1
1,909,115	-				+0.8
1,909,120	+				-0.1
1,909,128	-				-0.1
1,909,146	+				+0.5
1,909,245	-		CCNA_01782	0.14	+0.2
1,909,258	+		CCNA_01782	0.15	-0.4
1,909,263	+		CCNA_01782	0.15	+0.5
1,909,271	-		CCNA_01782	0.15	+0.3
1,909,271	-		CCNA_01782	0.15	-1.0
1,909,271	-		CCNA_01782	0.15	+1.2
1,909,335	-		CCNA_01782	0.18	+1.1
1,909,341	-		CCNA_01782	0.18	+2.1
1,909,350	-		CCNA_01782	0.19	+1.5
1,909,423	+		CCNA_01782	0.22	+0.2
1,909,423	+		CCNA_01782	0.22	+0.3
1,909,423	+		CCNA_01782	0.22	+1.1
1,909,423	+		CCNA_01782	0.22	+1.0
1,909,423	+		CCNA_01782	0.22	+1.8
1,909,423	+		CCNA_01782	0.22	+0.7
1,909,423	+		CCNA_01782	0.22	-0.1
1,909,431	-		CCNA_01782	0.22	+1.2
1,909,431	-		CCNA_01782	0.22	+3.1
1,909,431	-		CCNA_01782	0.22	+0.4
1,909,431	-		CCNA_01782	0.22	+0.6
1,909,431	-		CCNA_01782	0.22	+0.5
1,909,431	-		CCNA_01782	0.22	-0.5
1,909,431	-		CCNA_01782	0.22	+2.6
1,909,431	-		CCNA_01782	0.22	-0.2
1,909,431	-		CCNA_01782	0.22	-0.7
1,909,431	-		CCNA_01782	0.22	+0.9
1,909,431	-		CCNA_01782	0.22	-0.5
1,909,431	-		CCNA_01782	0.22	-0.5
1,909,431	-		CCNA_01782	0.22	-0.6
1,909,431	-		CCNA_01782	0.22	+1.1
1,909,431	-		CCNA_01782	0.22	+1.9
1,909,438	+		CCNA_01782	0.23	-0.4
1,909,438	+		CCNA_01782	0.23	+0.6
1,909,444	-		CCNA_01782	0.23	-0.0
1,909,446	-		CCNA_01782	0.23	-0.9