Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01711

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,841,794	+		CCNA_01710	0.47	-0.6
1,841,902	+		CCNA_01710	0.54	-0.3
1,841,902	+		CCNA_01710	0.54	+0.8
1,841,904	-		CCNA_01710	0.54	-0.6
1,841,909	-		CCNA_01710	0.54	+0.7
1,841,915	+		CCNA_01710	0.55	-0.8
1,841,915	+		CCNA_01710	0.55	+2.0
1,841,915	+		CCNA_01710	0.55	-0.1
1,841,961	-		CCNA_01710	0.58	+2.0
1,842,001	+		CCNA_01710	0.60	-0.6
1,842,015	-		CCNA_01710	0.61	+0.7
1,842,053	+		CCNA_01710	0.64	+0.7
1,842,154	+		CCNA_01710	0.70	-1.1
1,842,179	+		CCNA_01710	0.72	+2.3
1,842,187	-		CCNA_01710	0.73	-0.5
1,842,221	+		CCNA_01710	0.75	+1.3
1,842,229	-		CCNA_01710	0.75	-0.2
1,842,267	-		CCNA_01710	0.78	+0.9
1,842,304	-		CCNA_01710	0.80	+1.2
1,842,306	-		CCNA_01710	0.80	-0.4
1,842,381	-		CCNA_01710	0.85	+0.4
1,842,418	+		CCNA_01710	0.88	-0.7
1,842,425	+		CCNA_01710	0.88	+0.4
1,842,426	-		CCNA_01710	0.88	+1.3
1,842,432	-		CCNA_01710	0.89	+0.2
1,842,506	+				+0.7
1,842,514	-				+0.4
1,842,516	+				+1.2
1,842,516	+				+2.0
1,842,516	+				-0.1
1,842,516	+				-1.5
1,842,524	-				+0.4
1,842,524	-				+0.4
1,842,524	-				+0.8
1,842,534	-				+0.4
1,842,534	-				+1.8
1,842,640	-				-0.6
1,842,662	+				+1.2
1,842,662	+				-0.6
1,842,662	+				+1.0
1,842,664	-				+0.2
1,842,670	-				-2.2
1,842,736	-				+1.8
1,842,756	+				-1.0
1,842,764	-				+0.6
1,842,891	+				+0.4
1,842,891	+				+0.5
1,842,899	-				+0.3
1,842,899	-				-0.2
1,842,899	-				+1.0
1,842,904	-				-0.2
1,842,911	+				-0.3
1,842,916	+				+3.5
1,842,921	+				-0.9
1,842,921	+				+0.3
1,842,942	+		CCNA_01711	0.11	-1.0
1,842,998	-		CCNA_01711	0.15	+1.3
1,843,017	+		CCNA_01711	0.16	-1.1
1,843,051	+		CCNA_01711	0.18	+0.4
1,843,051	+		CCNA_01711	0.18	-1.5
1,843,059	-		CCNA_01711	0.19	+2.1
1,843,064	-		CCNA_01711	0.19	+1.1
1,843,089	+		CCNA_01711	0.21	+2.0
1,843,134	-		CCNA_01711	0.24	+0.4
1,843,134	-		CCNA_01711	0.24	-0.0
1,843,134	-		CCNA_01711	0.24	+1.4
1,843,158	-		CCNA_01711	0.26	+1.3
1,843,160	+		CCNA_01711	0.26	+1.6
1,843,194	-		CCNA_01711	0.28	+0.8
1,843,195	-		CCNA_01711	0.28	+0.8
1,843,214	+		CCNA_01711	0.29	+0.5
1,843,227	+		CCNA_01711	0.30	+1.3
1,843,227	+		CCNA_01711	0.30	+0.1
1,843,233	-		CCNA_01711	0.31	+1.2
1,843,298	+		CCNA_01711	0.35	-0.3
1,843,298	+		CCNA_01711	0.35	+0.4
1,843,306	+		CCNA_01711	0.36	-1.2
1,843,336	+		CCNA_01711	0.38	+0.9
1,843,336	+		CCNA_01711	0.38	+2.2
1,843,344	-		CCNA_01711	0.38	-0.8
1,843,361	+		CCNA_01711	0.39	-0.7
1,843,384	+		CCNA_01711	0.41	+0.8
1,843,392	-		CCNA_01711	0.41	+0.2
1,843,392	-		CCNA_01711	0.41	+1.4
1,843,392	-		CCNA_01711	0.41	-0.4
1,843,435	-		CCNA_01711	0.44	+2.6
1,843,468	+		CCNA_01711	0.47	+0.9
1,843,505	+		CCNA_01711	0.49	+0.7
1,843,542	+		CCNA_01711	0.52	+0.8
1,843,543	+		CCNA_01711	0.52	-0.7
1,843,543	+		CCNA_01711	0.52	-0.1
1,843,543	+		CCNA_01711	0.52	+0.6
1,843,551	-		CCNA_01711	0.52	-0.3
1,843,551	-		CCNA_01711	0.52	-0.5
1,843,551	-		CCNA_01711	0.52	+0.5
1,843,565	-		CCNA_01711	0.53	+0.4
1,843,609	-		CCNA_01711	0.56	+1.6
1,843,647	+		CCNA_01711	0.59	-0.1
1,843,674	-		CCNA_01711	0.61	-0.7
1,843,674	-		CCNA_01711	0.61	+1.6
1,843,674	-		CCNA_01711	0.61	+1.0
1,843,679	-		CCNA_01711	0.61	-0.3
1,843,715	+		CCNA_01711	0.63	-0.7
1,843,715	+		CCNA_01711	0.63	+0.4
1,843,719	-		CCNA_01711	0.64	+0.8
1,843,738	+		CCNA_01711	0.65	+1.2
1,843,837	-		CCNA_01711	0.72	+0.4
1,843,896	-		CCNA_01711	0.76	+0.9
1,843,928	+		CCNA_01711	0.78	+0.0
1,843,934	+		CCNA_01711	0.78	+2.4
1,843,936	-		CCNA_01711	0.78	-0.6
1,844,062	-		CCNA_01711	0.87	+0.4
1,844,104	+		CCNA_01711	0.90	+0.9
1,844,125	+				-0.7
1,844,195	-				-0.9
1,844,195	-				+0.9
1,844,219	-				+0.0
1,844,301	-		CCNA_01712	0.15	+5.2
1,844,397	-		CCNA_01712	0.40	+5.4
1,844,419	-		CCNA_01712	0.45	+5.6
1,844,472	-				+1.8
1,844,473	-		CCNA_01712	0.59	+4.5
1,844,473	-		CCNA_01712	0.59	+5.5
1,844,487	-		CCNA_01712	0.63	+5.0
1,844,508	-		CCNA_01712	0.68	+5.2
1,844,520	-		CCNA_01712	0.72	+5.3
1,844,520	-		CCNA_01712	0.72	+4.7
1,844,520	-		CCNA_01712	0.72	+5.1
1,844,561	-		CCNA_01712	0.82	+5.5
1,844,575	-		CCNA_01712	0.86	+5.0
1,844,575	-		CCNA_01712	0.86	+5.0
1,844,575	-		CCNA_01712	0.86	+5.0
1,844,618	-				+4.7
1,844,621	+				+0.4
1,844,621	+				-1.6
1,844,699	+				-0.0
1,844,722	+				-0.6
1,844,762	+				+0.8
1,844,762	+				-0.1
1,844,762	+				+1.1
1,844,768	+				-0.0
1,844,768	+				-0.6
1,844,768	+				-0.6
1,844,770	-				+0.6
1,844,776	-				+0.8
1,844,823	+		CCNA_01713	0.12	+1.1
1,844,828	+		CCNA_01713	0.13	+1.2
1,844,845	+		CCNA_01713	0.16	+0.3
1,844,853	-		CCNA_01713	0.17	+1.9
1,844,908	+		CCNA_01713	0.27	-0.7
1,844,932	+		CCNA_01713	0.31	-0.5
1,844,935	-		CCNA_01713	0.32	-0.1
1,844,962	-		CCNA_01713	0.36	+0.3
1,844,962	-		CCNA_01713	0.36	-0.3
1,844,962	-		CCNA_01713	0.36	-0.4
1,845,020	-		CCNA_01713	0.46	+0.9
1,845,031	+		CCNA_01713	0.48	+0.6
1,845,062	+		CCNA_01713	0.54	+1.2
1,845,083	-		CCNA_01713	0.57	+0.0
1,845,101	+		CCNA_01713	0.60	+0.2
1,845,136	+		CCNA_01713	0.66	+2.0
1,845,167	-		CCNA_01713	0.72	+1.8
1,845,167	-		CCNA_01713	0.72	+0.6
1,845,176	+		CCNA_01713	0.73	+1.0
1,845,177	-		CCNA_01713	0.73	+1.3
1,845,186	+		CCNA_01713	0.75	+1.4
1,845,191	+		CCNA_01713	0.76	+0.3
1,845,196	-		CCNA_01713	0.77	+0.2
1,845,201	-		CCNA_01713	0.78	+0.6
1,845,223	+		CCNA_01713	0.81	+2.0
1,845,226	-		CCNA_01713	0.82	-0.8
1,845,245	+				+1.2