Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01701

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,831,941	+		CCNA_01700	0.20	+0.9
1,831,963	-		CCNA_01700	0.21	+1.0
1,831,967	+		CCNA_01700	0.22	+0.4
1,831,970	-		CCNA_01700	0.22	-0.7
1,831,975	-		CCNA_01700	0.22	-0.1
1,832,006	+		CCNA_01700	0.25	+1.8
1,832,014	-		CCNA_01700	0.25	-1.0
1,832,085	+		CCNA_01700	0.31	+1.6
1,832,115	-		CCNA_01700	0.34	+0.3
1,832,120	-		CCNA_01700	0.34	+1.0
1,832,208	-		CCNA_01700	0.41	-1.1
1,832,223	+		CCNA_01700	0.42	-0.1
1,832,231	-		CCNA_01700	0.43	+0.2
1,832,231	-		CCNA_01700	0.43	-1.6
1,832,231	-		CCNA_01700	0.43	+1.6
1,832,231	-		CCNA_01700	0.43	-0.5
1,832,231	-		CCNA_01700	0.43	-1.3
1,832,257	-		CCNA_01700	0.45	+2.3
1,832,268	+		CCNA_01700	0.46	+2.3
1,832,276	-		CCNA_01700	0.47	-0.5
1,832,276	-		CCNA_01700	0.47	+0.6
1,832,279	+		CCNA_01700	0.47	-1.8
1,832,321	-		CCNA_01700	0.50	+0.5
1,832,321	-		CCNA_01700	0.50	-0.6
1,832,363	-		CCNA_01700	0.54	+1.7
1,832,381	+		CCNA_01700	0.55	+1.4
1,832,442	+		CCNA_01700	0.60	+1.3
1,832,444	-		CCNA_01700	0.60	+0.4
1,832,485	+		CCNA_01700	0.63	+1.0
1,832,514	-		CCNA_01700	0.66	+0.8
1,832,599	-		CCNA_01700	0.73	+1.4
1,832,646	+		CCNA_01700	0.76	+0.3
1,832,646	+		CCNA_01700	0.76	-0.6
1,832,708	-		CCNA_01700	0.81	+0.3
1,832,813	-		CCNA_01700	0.90	-0.2
1,832,813	-		CCNA_01700	0.90	+1.1
1,832,931	-				+0.2
1,832,934	+				+0.1
1,832,934	+				-0.4
1,832,942	-				-0.0
1,832,952	-				+0.4
1,832,989	+				+0.1
1,832,997	-				+0.9
1,833,045	+		CCNA_01701	0.11	+0.9
1,833,091	+		CCNA_01701	0.15	+1.4
1,833,116	+		CCNA_01701	0.18	+1.6
1,833,129	+		CCNA_01701	0.19	+0.9
1,833,130	+		CCNA_01701	0.19	+0.0
1,833,130	+		CCNA_01701	0.19	+0.1
1,833,137	-		CCNA_01701	0.20	+2.3
1,833,137	-		CCNA_01701	0.20	+1.1
1,833,138	-		CCNA_01701	0.20	+2.8
1,833,138	-		CCNA_01701	0.20	+0.6
1,833,171	-		CCNA_01701	0.23	+0.6
1,833,203	-		CCNA_01701	0.27	-0.6
1,833,210	+		CCNA_01701	0.27	-1.0
1,833,210	+		CCNA_01701	0.27	+0.9
1,833,241	-		CCNA_01701	0.30	+1.0
1,833,243	+		CCNA_01701	0.31	-1.5
1,833,254	+		CCNA_01701	0.32	-0.2
1,833,272	-		CCNA_01701	0.34	+1.4
1,833,319	+		CCNA_01701	0.38	-1.1
1,833,320	+		CCNA_01701	0.39	+1.6
1,833,320	+		CCNA_01701	0.39	-0.2
1,833,320	+		CCNA_01701	0.39	+0.3
1,833,339	+		CCNA_01701	0.40	-0.0
1,833,403	+		CCNA_01701	0.47	+3.6
1,833,423	+		CCNA_01701	0.49	+0.2
1,833,426	+		CCNA_01701	0.49	-0.4
1,833,434	-		CCNA_01701	0.50	+0.5
1,833,436	+		CCNA_01701	0.50	+0.1
1,833,581	+		CCNA_01701	0.65	-0.0
1,833,606	-		CCNA_01701	0.67	+0.2
1,833,636	+		CCNA_01701	0.71	-1.7
1,833,674	+				+2.6
1,833,674	+		CCNA_01701	0.74	+1.3
1,833,674	+		CCNA_01701	0.74	+1.2
1,833,674	+		CCNA_01701	0.74	-0.6
1,833,674	+		CCNA_01701	0.74	-2.0
1,833,680	+		CCNA_01701	0.75	+1.8
1,833,694	+		CCNA_01701	0.76	-1.0
1,833,718	-		CCNA_01701	0.79	+5.0
1,833,718	-		CCNA_01701	0.79	+4.4
1,833,719	+		CCNA_01701	0.79	+1.9
1,833,745	-		CCNA_01701	0.82	+2.0
1,833,745	-		CCNA_01701	0.82	+0.6
1,833,759	+		CCNA_01701	0.83	-2.0
1,833,772	-		CCNA_01701	0.84	+1.8
1,833,780	+		CCNA_01701	0.85	-1.0
1,833,821	-		CCNA_01701	0.89	+1.8
1,833,849	-				+0.1
1,833,895	+				+0.3
1,833,916	-				+1.8
1,833,947	-				+1.6
1,833,983	-				+0.9
1,833,993	+				-1.2
1,834,033	+				+0.3
1,834,046	-		CCNA_01702	0.11	+0.9
1,834,096	+		CCNA_01702	0.15	+0.4
1,834,096	+		CCNA_01702	0.15	+0.1
1,834,099	-		CCNA_01702	0.15	-0.6
1,834,172	+		CCNA_01702	0.22	-0.8
1,834,181	+		CCNA_01702	0.23	+0.3
1,834,208	+		CCNA_01702	0.25	-0.1
1,834,250	+		CCNA_01702	0.29	+1.9
1,834,263	+		CCNA_01702	0.30	+0.2
1,834,267	+		CCNA_01702	0.30	+1.3
1,834,301	+		CCNA_01702	0.33	-0.6
1,834,313	+		CCNA_01702	0.34	+1.4
1,834,313	+		CCNA_01702	0.34	-0.1
1,834,318	+		CCNA_01702	0.35	+0.7
1,834,321	-		CCNA_01702	0.35	+0.6
1,834,324	+		CCNA_01702	0.35	-0.1
1,834,326	-		CCNA_01702	0.35	+2.0
1,834,326	-		CCNA_01702	0.35	+1.8
1,834,326	-		CCNA_01702	0.35	+0.8
1,834,326	-		CCNA_01702	0.35	+0.4
1,834,327	-		CCNA_01702	0.35	-0.9
1,834,327	-		CCNA_01702	0.35	+1.8
1,834,327	-		CCNA_01702	0.35	+1.0
1,834,422	+		CCNA_01702	0.44	+2.3
1,834,423	-		CCNA_01702	0.44	+1.4
1,834,517	-		CCNA_01702	0.52	+1.6
1,834,569	+		CCNA_01702	0.57	+1.6
1,834,577	-		CCNA_01702	0.58	-0.2
1,834,577	-		CCNA_01702	0.58	+0.0
1,834,626	+		CCNA_01702	0.62	-1.4
1,834,679	+		CCNA_01702	0.67	-1.4
1,834,684	+		CCNA_01702	0.67	+0.0
1,834,739	+		CCNA_01702	0.72	-1.7
1,834,739	+		CCNA_01702	0.72	-1.1
1,834,752	-		CCNA_01702	0.73	+1.1
1,834,760	+		CCNA_01702	0.74	-0.6
1,834,788	-		CCNA_01702	0.76	-2.2
1,834,793	+		CCNA_01702	0.77	-0.3
1,834,827	+		CCNA_01702	0.80	+0.4