Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01667

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,788,756	-		CCNA_01666	0.63	+0.9
1,788,784	+		CCNA_01666	0.65	+0.5
1,788,784	+		CCNA_01666	0.65	-0.5
1,788,809	+		CCNA_01666	0.65	-0.3
1,788,912	+		CCNA_01666	0.69	+1.1
1,788,930	-		CCNA_01666	0.70	+0.2
1,788,930	-		CCNA_01666	0.70	-0.1
1,788,967	+		CCNA_01666	0.71	-0.2
1,789,035	-		CCNA_01666	0.74	+0.9
1,789,042	+		CCNA_01666	0.74	-0.1
1,789,042	+		CCNA_01666	0.74	-1.3
1,789,042	+		CCNA_01666	0.74	-0.4
1,789,047	+		CCNA_01666	0.74	+2.1
1,789,050	-		CCNA_01666	0.74	-1.1
1,789,050	-		CCNA_01666	0.74	-1.1
1,789,050	-		CCNA_01666	0.74	-1.3
1,789,050	-		CCNA_01666	0.74	-0.1
1,789,050	-		CCNA_01666	0.74	+0.4
1,789,061	+		CCNA_01666	0.75	+0.8
1,789,061	+		CCNA_01666	0.75	-0.8
1,789,061	+		CCNA_01666	0.75	+0.1
1,789,061	+		CCNA_01666	0.75	+0.5
1,789,069	-		CCNA_01666	0.75	-0.2
1,789,069	-		CCNA_01666	0.75	+1.0
1,789,069	-		CCNA_01666	0.75	-0.2
1,789,069	-		CCNA_01666	0.75	+1.1
1,789,069	-		CCNA_01666	0.75	-1.2
1,789,069	-		CCNA_01666	0.75	-0.3
1,789,069	-		CCNA_01666	0.75	+0.3
1,789,080	+		CCNA_01666	0.76	-0.9
1,789,090	+		CCNA_01666	0.76	+0.3
1,789,090	+		CCNA_01666	0.76	+1.4
1,789,098	-		CCNA_01666	0.76	+0.4
1,789,098	-		CCNA_01666	0.76	-0.5
1,789,134	+		CCNA_01666	0.78	-0.9
1,789,134	+		CCNA_01666	0.78	-0.3
1,789,134	+		CCNA_01666	0.78	+2.3
1,789,134	+		CCNA_01666	0.78	-0.2
1,789,134	+		CCNA_01666	0.78	+0.6
1,789,142	-		CCNA_01666	0.78	+0.0
1,789,142	-		CCNA_01666	0.78	+0.2
1,789,142	-		CCNA_01666	0.78	-0.6
1,789,142	-		CCNA_01666	0.78	-1.4
1,789,156	+		CCNA_01666	0.78	+0.1
1,789,169	+		CCNA_01666	0.79	-0.1
1,789,178	+		CCNA_01666	0.79	+2.5
1,789,186	-		CCNA_01666	0.80	-0.3
1,789,235	-		CCNA_01666	0.81	+0.5
1,789,279	+		CCNA_01666	0.83	-0.7
1,789,287	-		CCNA_01666	0.83	+0.6
1,789,287	-		CCNA_01666	0.83	-0.1
1,789,287	-		CCNA_01666	0.83	+0.8
1,789,321	-		CCNA_01666	0.85	-0.7
1,789,362	+		CCNA_01666	0.86	+1.2
1,789,362	+		CCNA_01666	0.86	+0.5
1,789,365	-		CCNA_01666	0.86	-1.0
1,789,405	+		CCNA_01666	0.88	-1.1
1,789,413	-		CCNA_01666	0.88	-0.5
1,789,468	+				+0.9
1,789,468	-				-0.2
1,789,493	-				-0.1
1,789,538	+				-0.4
1,789,548	+				+0.1
1,789,584	+				-0.1
1,789,592	+				+0.5
1,789,594	-				+0.8
1,789,609	+				-0.4
1,789,698	+				+0.8
1,789,698	+				+0.4
1,789,698	+				-0.4
1,789,698	+				-0.1
1,789,706	-				+1.0
1,789,706	-				-0.6
1,789,749	+				-0.1
1,789,759	+				-0.4
1,789,776	+				+1.3
1,789,853	+		CCNA_01667	0.16	+0.0
1,789,870	-		CCNA_01667	0.18	+1.2
1,789,872	+		CCNA_01667	0.19	+4.8
1,789,872	+		CCNA_01667	0.19	+4.0
1,789,872	+		CCNA_01667	0.19	+3.6
1,789,877	+		CCNA_01667	0.19	-0.6
1,789,885	-		CCNA_01667	0.20	+0.1
1,789,893	+		CCNA_01667	0.22	-0.2
1,789,915	-		CCNA_01667	0.25	+0.8
1,789,915	-		CCNA_01667	0.25	-0.6
1,789,920	-		CCNA_01667	0.25	-0.3
1,789,932	+		CCNA_01667	0.27	+0.4
1,789,970	+		CCNA_01667	0.33	+0.6
1,789,976	+		CCNA_01667	0.33	+1.3
1,789,976	+		CCNA_01667	0.33	-0.2
1,790,036	+		CCNA_01667	0.42	-0.0
1,790,044	-		CCNA_01667	0.43	-1.4
1,790,044	-		CCNA_01667	0.43	+1.3
1,790,125	+		CCNA_01667	0.55	-0.6
1,790,143	-		CCNA_01667	0.57	+0.4
1,790,163	+		CCNA_01667	0.60	-0.2
1,790,163	+		CCNA_01667	0.60	+1.3
1,790,171	-		CCNA_01667	0.61	+1.6
1,790,171	-		CCNA_01667	0.61	-1.1
1,790,228	-		CCNA_01667	0.70	-1.2
1,790,228	-		CCNA_01667	0.70	-0.1
1,790,256	+		CCNA_01667	0.74	-1.4
1,790,256	+		CCNA_01667	0.74	+2.9
1,790,269	-		CCNA_01667	0.75	-0.7
1,790,269	-		CCNA_01667	0.75	-0.6
1,790,269	-		CCNA_01667	0.75	+0.2
1,790,323	+		CCNA_01667	0.83	-1.5
1,790,325	+		CCNA_01667	0.83	-1.1
1,790,325	+		CCNA_01667	0.83	+0.5
1,790,331	-		CCNA_01667	0.84	-0.1
1,790,331	-		CCNA_01667	0.84	+1.3
1,790,333	-		CCNA_01667	0.85	+0.9
1,790,333	-		CCNA_01667	0.85	-0.8
1,790,367	-		CCNA_01667	0.89	+1.7
1,790,385	+				-1.0
1,790,447	+				+0.5
1,790,447	+				-0.6
1,790,503	+				+0.1
1,790,527	-				+0.4
1,790,596	+				+1.0
1,790,596	+				+0.3
1,790,596	+				+0.9
1,790,621	+				-0.1
1,790,662	-				-2.2
1,790,700	+				+0.1
1,790,736	+				-1.3
1,790,737	+				+0.1
1,790,737	+				+1.0
1,790,745	-				+2.0
1,790,791	+				+0.7
1,790,793	-		CCNA_01668	0.10	+0.0
1,790,796	+		CCNA_01668	0.11	+1.0
1,790,796	+		CCNA_01668	0.11	+1.2
1,790,852	+		CCNA_01668	0.17	-0.2
1,790,857	+		CCNA_01668	0.18	-0.7
1,790,859	+		CCNA_01668	0.18	-0.9
1,790,859	+		CCNA_01668	0.18	+0.1
1,790,884	+		CCNA_01668	0.21	+0.7
1,790,889	+		CCNA_01668	0.21	-0.3
1,790,889	+		CCNA_01668	0.21	-0.0
1,790,889	+		CCNA_01668	0.21	-0.3
1,790,897	-		CCNA_01668	0.22	-1.7
1,790,947	-		CCNA_01668	0.28	-0.5
1,790,977	-		CCNA_01668	0.31	+0.4
1,790,989	+		CCNA_01668	0.33	+0.1
1,790,995	+		CCNA_01668	0.33	+1.9
1,790,995	+		CCNA_01668	0.33	-0.9
1,790,996	-		CCNA_01668	0.33	-1.1
1,791,043	+		CCNA_01668	0.39	+0.6
1,791,130	-		CCNA_01668	0.49	+2.0
1,791,132	-		CCNA_01668	0.49	+3.7
1,791,160	+		CCNA_01668	0.52	-0.7
1,791,160	+		CCNA_01668	0.52	+0.0
1,791,160	+		CCNA_01668	0.52	-0.4
1,791,160	+		CCNA_01668	0.52	-0.1
1,791,168	-		CCNA_01668	0.53	-0.3
1,791,202	+		CCNA_01668	0.57	+3.0
1,791,209	+		CCNA_01668	0.58	+4.3
1,791,217	-		CCNA_01668	0.59	+1.1
1,791,222	-		CCNA_01668	0.59	-1.4
1,791,272	+		CCNA_01668	0.65	-0.5
1,791,280	-		CCNA_01668	0.66	+0.5
1,791,290	+		CCNA_01668	0.67	-0.9
1,791,290	+		CCNA_01668	0.67	+1.7
1,791,355	+		CCNA_01668	0.75	+0.2
1,791,374	+		CCNA_01668	0.77	+1.9
1,791,382	-		CCNA_01668	0.78	+2.5
1,791,382	-		CCNA_01668	0.78	-0.7
1,791,407	-		CCNA_01668	0.81	+2.2
1,791,425	-				+1.9