Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01634

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,751,583	+				-0.4
1,751,591	-				-0.6
1,751,599	-				-0.9
1,751,626	-				+0.4
1,752,520	+				+0.3
1,752,520	+				+0.9
1,752,528	-				+0.3
1,752,542	-				+1.9
1,752,665	-		CCNA_01634	0.10	-1.6
1,752,726	+		CCNA_01634	0.17	+0.8
1,752,726	+		CCNA_01634	0.17	+0.6
1,752,726	+		CCNA_01634	0.17	+1.5
1,752,734	-		CCNA_01634	0.18	+0.4
1,752,745	+		CCNA_01634	0.19	+1.8
1,752,745	+		CCNA_01634	0.19	+1.6
1,752,745	+		CCNA_01634	0.19	+1.5
1,752,753	-		CCNA_01634	0.20	+1.5
1,752,776	+		CCNA_01634	0.23	+3.3
1,752,784	-		CCNA_01634	0.24	-0.4
1,752,815	-		CCNA_01634	0.28	-0.6
1,752,890	+		CCNA_01634	0.37	+0.9
1,752,898	-		CCNA_01634	0.37	+0.4
1,752,927	+		CCNA_01634	0.41	+0.7
1,752,952	+		CCNA_01634	0.44	+1.8
1,753,010	+		CCNA_01634	0.51	+0.1
1,753,023	+		CCNA_01634	0.52	-0.1
1,753,023	+		CCNA_01634	0.52	-1.4
1,753,023	+		CCNA_01634	0.52	+0.4
1,753,023	+		CCNA_01634	0.52	-0.8
1,753,023	+		CCNA_01634	0.52	+0.4
1,753,023	+		CCNA_01634	0.52	-0.8
1,753,023	+		CCNA_01634	0.52	+0.2
1,753,023	+		CCNA_01634	0.52	-1.1
1,753,023	+		CCNA_01634	0.52	+1.4
1,753,031	-		CCNA_01634	0.53	+0.4
1,753,031	-		CCNA_01634	0.53	-0.2
1,753,031	-		CCNA_01634	0.53	+1.5
1,753,031	-		CCNA_01634	0.53	-0.8
1,753,031	-		CCNA_01634	0.53	+0.7
1,753,046	+				+3.5
1,753,054	-		CCNA_01634	0.56	+0.1
1,753,092	+		CCNA_01634	0.60	+0.6
1,753,127	+		CCNA_01634	0.64	+1.4
1,753,145	+		CCNA_01634	0.66	+0.8
1,753,162	+		CCNA_01634	0.68	-0.2
1,753,170	-		CCNA_01634	0.69	+0.0
1,753,194	-		CCNA_01634	0.72	+0.1
1,753,197	-		CCNA_01634	0.73	+1.7
1,753,201	+		CCNA_01634	0.73	+0.7
1,753,225	-		CCNA_01634	0.76	+0.8
1,753,252	-				+2.2
1,753,298	+		CCNA_01634	0.84	+0.6
1,753,320	-		CCNA_01634	0.87	+1.9
1,753,321	-		CCNA_01634	0.87	-1.6
1,753,355	+				+0.5
1,753,370	+				+1.7
1,753,401	-				+0.1
1,753,404	+				-0.7
1,753,438	-				+0.8
1,753,486	-				+0.7
1,753,574	+		CCNA_01635	0.19	+2.9
1,753,613	-		CCNA_01635	0.25	-1.3
1,753,615	+		CCNA_01635	0.25	-0.3
1,753,615	+		CCNA_01635	0.25	+0.6
1,753,622	-		CCNA_01635	0.26	+1.4
1,753,623	-		CCNA_01635	0.26	+0.3
1,753,623	-		CCNA_01635	0.26	-1.3
1,753,635	-		CCNA_01635	0.28	+1.4
1,753,641	+		CCNA_01635	0.28	-0.3
1,753,663	+		CCNA_01635	0.31	+2.2
1,753,665	+		CCNA_01635	0.32	-0.3
1,753,665	+		CCNA_01635	0.32	-1.3
1,753,699	-		CCNA_01635	0.36	+0.4
1,753,745	+		CCNA_01635	0.43	+0.9
1,753,781	+		CCNA_01635	0.48	-0.5
1,753,781	-		CCNA_01635	0.48	+0.4
1,753,839	+		CCNA_01635	0.55	+1.2
1,753,849	+		CCNA_01635	0.57	+0.5
1,753,863	+		CCNA_01635	0.59	+1.1
1,753,877	+		CCNA_01635	0.61	-2.5
1,753,877	+		CCNA_01635	0.61	+0.7
1,753,877	-		CCNA_01635	0.61	+1.5
1,753,895	+		CCNA_01635	0.63	+1.0
1,753,950	+		CCNA_01635	0.71	-1.3
1,753,958	-		CCNA_01635	0.72	+2.0
1,753,960	+		CCNA_01635	0.72	+0.6
1,753,960	+		CCNA_01635	0.72	-0.4
1,753,968	-		CCNA_01635	0.73	-0.4
1,753,969	-		CCNA_01635	0.73	+1.2
1,753,989	-		CCNA_01635	0.76	+0.6
1,753,990	-		CCNA_01635	0.76	-0.7
1,754,026	+		CCNA_01635	0.81	+0.3
1,754,070	+		CCNA_01635	0.87	-0.9
1,754,070	+		CCNA_01635	0.87	-1.1
1,754,093	+				-0.9
1,754,093	+				+0.1
1,754,121	+				+0.1
1,754,158	+				+0.1
1,754,158	+				+2.1
1,754,158	+				+0.4
1,754,166	-				+1.4
1,754,181	+				+4.1
1,754,208	+				+2.1
1,754,234	+				-1.5
1,754,239	+				+0.8
1,754,239	+				+1.8
1,754,325	+				+1.5
1,754,328	-				+0.6
1,754,328	-				+1.9
1,754,333	-				-0.5
1,754,337	+				-0.6
1,754,337	+				+0.5
1,754,345	-				-0.1
1,754,345	-				+1.2
1,754,393	+		CCNA_01636	0.11	-0.5
1,754,401	-		CCNA_01636	0.12	+0.8