Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01545

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,654,045	+		CCNA_01543	0.37	+1.5
1,654,068	+		CCNA_01543	0.39	+1.2
1,654,102	-		CCNA_01543	0.42	-0.3
1,654,102	-		CCNA_01543	0.42	+0.1
1,654,119	+		CCNA_01543	0.43	-1.1
1,654,119	+		CCNA_01543	0.43	-0.4
1,654,127	-		CCNA_01543	0.43	-0.8
1,654,129	+		CCNA_01543	0.44	+1.3
1,654,129	+		CCNA_01543	0.44	+2.1
1,654,137	-		CCNA_01543	0.44	+0.0
1,654,137	-		CCNA_01543	0.44	+1.3
1,654,209	+		CCNA_01543	0.50	-1.2
1,654,259	-		CCNA_01543	0.53	+3.5
1,654,291	+		CCNA_01543	0.56	+2.5
1,654,345	+		CCNA_01543	0.60	+0.3
1,654,345	+		CCNA_01543	0.60	+2.5
1,654,353	-		CCNA_01543	0.60	+0.9
1,654,353	-		CCNA_01543	0.60	+0.5
1,654,353	-		CCNA_01543	0.60	+1.3
1,654,404	+		CCNA_01543	0.64	+0.0
1,654,411	-		CCNA_01543	0.65	-0.7
1,654,484	-		CCNA_01543	0.70	+1.2
1,654,487	-		CCNA_01543	0.70	-0.1
1,654,645	-		CCNA_01543	0.82	-0.6
1,654,645	-		CCNA_01543	0.82	-1.1
1,654,667	+		CCNA_01543	0.84	+1.6
1,654,668	+		CCNA_01543	0.84	-0.1
1,654,675	-		CCNA_01543	0.84	+1.0
1,654,713	-		CCNA_01543	0.87	+1.1
1,654,781	+				-0.3
1,654,784	-				+0.6
1,654,806	-				+0.6
1,654,817	+				-0.7
1,654,821	-				-1.0
1,654,833	-				-1.7
1,654,840	-				+0.6
1,654,925	-				+1.5
1,654,933	-				+3.6
1,654,983	+				+0.2
1,654,991	-				-0.3
1,655,065	-				-0.4
1,655,086	+				-0.6
1,655,123	+				-0.9
1,655,123	+				-0.9
1,655,148	-				+0.3
1,655,185	+		CCNA_01545	0.12	+0.8
1,655,195	+		CCNA_01545	0.13	-0.3
1,655,289	+		CCNA_01545	0.21	+0.1
1,655,320	+		CCNA_01545	0.24	+2.0
1,655,373	-		CCNA_01545	0.28	+1.1
1,655,416	+		CCNA_01545	0.32	-0.3
1,655,425	-		CCNA_01545	0.33	+1.1
1,655,440	+		CCNA_01545	0.34	+1.9
1,655,475	+		CCNA_01545	0.37	-0.8
1,655,549	+		CCNA_01545	0.43	-1.0
1,655,549	+		CCNA_01545	0.43	-0.1
1,655,549	+		CCNA_01545	0.43	+1.0
1,655,549	+		CCNA_01545	0.43	+0.3
1,655,549	+		CCNA_01545	0.43	+0.5
1,655,549	+		CCNA_01545	0.43	-0.5
1,655,549	+		CCNA_01545	0.43	+0.3
1,655,550	+		CCNA_01545	0.43	+1.1
1,655,557	-		CCNA_01545	0.44	+1.2
1,655,557	-		CCNA_01545	0.44	-0.1
1,655,557	-		CCNA_01545	0.44	+0.5
1,655,557	-		CCNA_01545	0.44	+2.0
1,655,586	+		CCNA_01545	0.46	+0.1
1,655,591	+		CCNA_01545	0.47	+1.0
1,655,594	-		CCNA_01545	0.47	+0.0
1,655,594	-		CCNA_01545	0.47	-2.1
1,655,615	+		CCNA_01545	0.49	+0.5
1,655,623	-		CCNA_01545	0.49	+0.2
1,655,692	+		CCNA_01545	0.55	-0.7
1,655,722	-		CCNA_01545	0.58	+0.9
1,655,791	+		CCNA_01545	0.64	-2.6
1,655,831	+		CCNA_01545	0.67	+0.1
1,655,841	-		CCNA_01545	0.68	+2.9
1,655,879	+		CCNA_01545	0.71	-0.4
1,655,887	-		CCNA_01545	0.72	+0.5
1,655,896	+		CCNA_01545	0.73	-1.0
1,655,944	+		CCNA_01545	0.77	+0.6
1,655,945	+		CCNA_01545	0.77	+0.4
1,655,952	-		CCNA_01545	0.77	-0.1
1,655,961	+		CCNA_01545	0.78	+0.6
1,655,969	-		CCNA_01545	0.79	+2.5
1,655,972	+		CCNA_01545	0.79	+0.2
1,655,980	-		CCNA_01545	0.80	+0.9
1,655,980	-		CCNA_01545	0.80	-0.1
1,655,980	-		CCNA_01545	0.80	+0.4
1,656,009	+		CCNA_01545	0.82	+1.7
1,656,018	-		CCNA_01545	0.83	+1.5
1,656,048	+		CCNA_01545	0.85	+3.0
1,656,058	+		CCNA_01545	0.86	+1.1
1,656,066	-		CCNA_01545	0.87	-1.3
1,656,066	-		CCNA_01545	0.87	+0.6
1,656,077	+		CCNA_01545	0.88	+1.1
1,656,085	+		CCNA_01545	0.88	+4.7
1,656,085	-		CCNA_01545	0.88	+0.2
1,656,100	+		CCNA_01545	0.90	+0.9
1,656,100	+		CCNA_01545	0.90	+1.0
1,656,100	+		CCNA_01545	0.90	-1.2
1,656,100	+		CCNA_01545	0.90	+0.4
1,656,108	-				-0.4
1,656,108	-				+2.1
1,656,108	-				+0.8
1,656,108	-				-0.7
1,656,111	+				+0.3
1,656,196	-				-0.5
1,656,269	+				+1.3
1,656,277	-				+1.1
1,656,277	-				-1.4
1,656,277	-				-0.9
1,656,277	-				-0.0
1,656,286	-				+0.1
1,656,318	+				+0.9
1,656,421	-				+2.1
1,656,473	+				+0.5
1,656,473	+				+1.2
1,656,476	-				+0.2
1,656,499	-				+1.3
1,656,566	+				+0.4
1,656,579	-		CCNA_01546	0.10	-0.1
1,656,581	-		CCNA_01546	0.10	+1.9
1,656,615	+		CCNA_01546	0.12	-1.2
1,656,615	+		CCNA_01546	0.12	+0.2
1,656,615	+		CCNA_01546	0.12	-0.0
1,656,623	-		CCNA_01546	0.12	+0.4
1,656,623	-		CCNA_01546	0.12	+0.8
1,656,638	+		CCNA_01546	0.13	-0.5
1,656,698	+		CCNA_01546	0.16	+1.2
1,656,699	+		CCNA_01546	0.16	-0.7
1,656,699	+		CCNA_01546	0.16	+2.1
1,656,710	+		CCNA_01546	0.16	+0.9
1,656,710	+		CCNA_01546	0.16	+1.1
1,656,710	+		CCNA_01546	0.16	+1.7
1,656,718	-		CCNA_01546	0.16	+1.4
1,656,718	-		CCNA_01546	0.16	+0.9
1,656,718	-		CCNA_01546	0.16	+1.0
1,656,718	-		CCNA_01546	0.16	+1.6
1,656,718	-		CCNA_01546	0.16	-0.4
1,656,718	-		CCNA_01546	0.16	+0.7
1,656,730	+		CCNA_01546	0.17	+1.6
1,656,730	+		CCNA_01546	0.17	-1.4
1,656,730	+		CCNA_01546	0.17	+0.9
1,656,730	+		CCNA_01546	0.17	-0.1
1,656,736	+		CCNA_01546	0.17	+1.7
1,656,738	-		CCNA_01546	0.17	+0.6
1,656,738	-		CCNA_01546	0.17	+0.2
1,656,738	-		CCNA_01546	0.17	+0.7
1,656,738	-		CCNA_01546	0.17	+0.2
1,656,738	-		CCNA_01546	0.17	+0.6
1,656,745	-		CCNA_01546	0.18	-1.1
1,656,776	-		CCNA_01546	0.19	-0.3
1,656,791	-		CCNA_01546	0.20	-0.7
1,656,791	-		CCNA_01546	0.20	+2.3
1,656,791	-		CCNA_01546	0.20	+2.1
1,656,791	-		CCNA_01546	0.20	+0.7
1,656,791	-		CCNA_01546	0.20	-0.4
1,656,814	-		CCNA_01546	0.21	+0.1
1,656,832	+		CCNA_01546	0.22	+0.1
1,656,866	-		CCNA_01546	0.23	+1.6
1,656,957	-		CCNA_01546	0.27	-0.3
1,656,959	+		CCNA_01546	0.27	+0.1
1,656,966	+		CCNA_01546	0.28	-0.7
1,656,982	+		CCNA_01546	0.28	-1.3
1,656,990	-		CCNA_01546	0.29	+0.6
1,656,990	-		CCNA_01546	0.29	-1.3
1,656,990	-		CCNA_01546	0.29	+1.3
1,656,990	-		CCNA_01546	0.29	+0.8
1,657,059	-		CCNA_01546	0.32	+1.6
1,657,169	-		CCNA_01546	0.37	-1.1
1,657,169	-		CCNA_01546	0.37	+1.6
1,657,169	-		CCNA_01546	0.37	+0.5
1,657,206	+		CCNA_01546	0.38	+0.1
1,657,206	+		CCNA_01546	0.38	-0.9
1,657,206	+		CCNA_01546	0.38	-0.6
1,657,214	-		CCNA_01546	0.39	+0.3