Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01523

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,630,563	+				-0.1
1,630,570	-				+1.9
1,630,610	-				+1.9
1,630,617	-				+1.4
1,630,636	+				+2.5
1,630,694	+		CCNA_01522	0.16	-0.3
1,630,698	-		CCNA_01522	0.16	+0.2
1,630,702	-		CCNA_01522	0.17	-0.5
1,630,702	-		CCNA_01522	0.17	+1.0
1,630,702	-		CCNA_01522	0.17	+1.2
1,630,727	+		CCNA_01522	0.20	+0.8
1,630,727	+		CCNA_01522	0.20	-0.5
1,630,727	+		CCNA_01522	0.20	-0.2
1,630,735	-		CCNA_01522	0.20	+1.4
1,630,735	-		CCNA_01522	0.20	+2.0
1,630,745	+		CCNA_01522	0.22	+0.4
1,630,745	+		CCNA_01522	0.22	-1.7
1,630,745	-		CCNA_01522	0.22	+0.9
1,630,745	-		CCNA_01522	0.22	+1.0
1,630,745	-		CCNA_01522	0.22	+0.5
1,630,761	-		CCNA_01522	0.23	+0.9
1,630,761	-		CCNA_01522	0.23	-0.7
1,630,823	+		CCNA_01522	0.31	+4.8
1,630,964	-		CCNA_01522	0.47	+0.9
1,630,980	-		CCNA_01522	0.49	-0.4
1,631,012	+		CCNA_01522	0.52	-0.7
1,631,020	-		CCNA_01522	0.53	+1.3
1,631,041	-		CCNA_01522	0.56	+0.5
1,631,114	-		CCNA_01522	0.64	-1.0
1,631,116	+		CCNA_01522	0.64	+1.9
1,631,124	-		CCNA_01522	0.65	-0.7
1,631,129	-		CCNA_01522	0.66	-1.5
1,631,130	-		CCNA_01522	0.66	-0.2
1,631,143	+		CCNA_01522	0.67	-0.6
1,631,151	-		CCNA_01522	0.68	-0.4
1,631,152	+		CCNA_01522	0.68	+4.0
1,631,160	-		CCNA_01522	0.69	+0.6
1,631,201	-		CCNA_01522	0.74	+0.7
1,631,247	+		CCNA_01522	0.79	-1.1
1,631,300	-		CCNA_01522	0.85	-1.0
1,631,328	+		CCNA_01522	0.89	+0.1
1,631,331	-		CCNA_01522	0.89	-0.2
1,631,331	-		CCNA_01522	0.89	+1.1
1,631,331	-		CCNA_01522	0.89	-0.9
1,631,336	-		CCNA_01522	0.90	+0.4
1,631,380	-				-1.2
1,631,407	+				+1.9
1,631,428	-				-0.4
1,631,428	-				+1.6
1,631,505	+				+1.6
1,631,511	+				-0.3
1,631,566	+				+1.0
1,631,566	+				-0.2
1,631,566	+				-0.3
1,631,573	-				+1.0
1,631,573	-				+1.2
1,631,574	-				-0.5
1,631,574	-				+1.0
1,631,574	-				+1.1
1,631,574	-				+0.5
1,631,574	-				+0.8
1,631,609	+		CCNA_01523	0.13	+1.8
1,631,633	+		CCNA_01523	0.17	-0.2
1,631,633	+		CCNA_01523	0.17	+0.7
1,631,633	+		CCNA_01523	0.17	-1.0
1,631,641	-		CCNA_01523	0.18	+2.5
1,631,641	-				+1.7
1,631,641	-		CCNA_01523	0.18	+0.3
1,631,641	-		CCNA_01523	0.18	+0.9
1,631,656	+		CCNA_01523	0.21	-0.0
1,631,664	-		CCNA_01523	0.22	+0.2
1,631,669	-		CCNA_01523	0.23	-0.7
1,631,693	-		CCNA_01523	0.27	+1.0
1,631,704	+		CCNA_01523	0.29	+0.3
1,631,706	+		CCNA_01523	0.29	+1.9
1,631,740	+		CCNA_01523	0.35	+0.0
1,631,843	+		CCNA_01523	0.53	+1.2
1,631,843	+		CCNA_01523	0.53	+0.7
1,631,843	+		CCNA_01523	0.53	+2.0
1,631,851	-		CCNA_01523	0.54	-1.1
1,631,851	-		CCNA_01523	0.54	-1.4
1,631,851	-		CCNA_01523	0.54	+1.4
1,631,851	-		CCNA_01523	0.54	+0.2
1,631,851	-		CCNA_01523	0.54	+1.0
1,631,851	-		CCNA_01523	0.54	+0.3
1,631,851	-		CCNA_01523	0.54	-0.9
1,631,851	-		CCNA_01523	0.54	+3.0
1,631,853	+		CCNA_01523	0.55	+0.5
1,631,860	-		CCNA_01523	0.56	-1.6
1,631,883	-		CCNA_01523	0.60	+0.3
1,631,910	+		CCNA_01523	0.64	-0.6
1,631,917	+		CCNA_01523	0.66	-0.5
1,631,929	+		CCNA_01523	0.68	+1.0
1,631,931	-		CCNA_01523	0.68	+1.2
1,631,985	-				+2.9
1,632,027	+		CCNA_01523	0.85	+1.7
1,632,027	+		CCNA_01523	0.85	+0.1
1,632,027	+		CCNA_01523	0.85	+0.6
1,632,031	-				+1.9
1,632,035	-		CCNA_01523	0.86	+0.5
1,632,041	+		CCNA_01523	0.87	+1.1
1,632,094	-				-0.6
1,632,176	+				+0.2
1,632,184	+				+1.3
1,632,186	+				-0.5
1,632,200	+				-1.8
1,632,204	-				+0.6
1,632,206	+				+0.4
1,632,214	-				+1.0
1,632,223	+				-0.9
1,632,223	+				+1.7
1,632,223	+				+0.7
1,632,223	+				+2.2
1,632,231	-				-0.2
1,632,246	+				-0.8
1,632,247	+				-0.1
1,632,247	+				+0.5
1,632,247	+				+0.1
1,632,256	+				+0.3
1,632,257	+				+1.7
1,632,260	-				+0.5
1,632,261	+				-1.0
1,632,261	+				-1.2
1,632,269	-				-1.1
1,632,295	+				-1.0
1,632,322	+				+1.8
1,632,340	+				+2.0
1,632,343	-				+1.2
1,632,348	-				+1.3
1,632,411	-				-3.1
1,632,434	-				-1.3
1,632,434	-				+2.2
1,632,492	+		CCNA_01524	0.12	+2.2
1,632,493	+		CCNA_01524	0.12	+1.3
1,632,548	+		CCNA_01524	0.15	-0.4
1,632,548	-		CCNA_01524	0.15	-0.4
1,632,639	+		CCNA_01524	0.20	+0.2
1,632,639	+		CCNA_01524	0.20	+0.3
1,632,639	+		CCNA_01524	0.20	+0.3
1,632,639	+		CCNA_01524	0.20	-0.9
1,632,647	-				+2.2
1,632,647	-		CCNA_01524	0.21	-1.6
1,632,657	-		CCNA_01524	0.21	+0.6
1,632,716	-		CCNA_01524	0.25	+0.1
1,632,716	-		CCNA_01524	0.25	+1.7
1,632,716	-				+1.3
1,632,719	+		CCNA_01524	0.25	+0.6
1,632,726	-		CCNA_01524	0.25	+1.3
1,632,741	+		CCNA_01524	0.26	-1.0
1,632,746	+		CCNA_01524	0.26	+0.6
1,632,749	-		CCNA_01524	0.26	-0.4
1,632,769	-		CCNA_01524	0.27	+2.5
1,632,836	+		CCNA_01524	0.31	+2.1
1,632,852	+		CCNA_01524	0.32	+0.3
1,632,879	+		CCNA_01524	0.34	+1.9
1,632,888	+		CCNA_01524	0.34	+1.7
1,632,895	+		CCNA_01524	0.35	+0.9
1,632,914	+		CCNA_01524	0.36	-0.2
1,632,914	+		CCNA_01524	0.36	+1.1
1,632,922	-		CCNA_01524	0.36	+2.5
1,632,949	-		CCNA_01524	0.38	+2.0
1,632,959	+		CCNA_01524	0.38	-1.2
1,632,977	-		CCNA_01524	0.39	+2.2
1,632,988	-		CCNA_01524	0.40	+0.3
1,633,036	+		CCNA_01524	0.42	+2.0
1,633,036	+		CCNA_01524	0.42	+0.4
1,633,036	+		CCNA_01524	0.42	-0.4
1,633,042	+		CCNA_01524	0.43	+0.2
1,633,043	-		CCNA_01524	0.43	-0.8
1,633,088	+		CCNA_01524	0.45	-0.9
1,633,096	-		CCNA_01524	0.46	+0.4
1,633,098	+		CCNA_01524	0.46	+0.4
1,633,106	-		CCNA_01524	0.46	+0.5
1,633,106	-		CCNA_01524	0.46	-1.4
1,633,106	-		CCNA_01524	0.46	+0.0
1,633,106	-		CCNA_01524	0.46	+0.1
1,633,106	-		CCNA_01524	0.46	+0.3