Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01505

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,615,449	+		CCNA_01504	0.55	+0.6
1,615,508	+		CCNA_01504	0.58	+1.8
1,615,518	+		CCNA_01504	0.58	+1.6
1,615,574	+		CCNA_01504	0.61	+1.2
1,615,582	-		CCNA_01504	0.61	+0.0
1,615,630	-		CCNA_01504	0.64	-0.2
1,615,676	+		CCNA_01504	0.66	+0.0
1,615,684	-		CCNA_01504	0.66	+0.5
1,615,684	-		CCNA_01504	0.66	+0.9
1,615,684	-		CCNA_01504	0.66	-0.1
1,615,684	-		CCNA_01504	0.66	+3.2
1,615,684	-		CCNA_01504	0.66	-0.3
1,615,684	-		CCNA_01504	0.66	+1.4
1,615,684	-		CCNA_01504	0.66	-0.6
1,615,857	+		CCNA_01504	0.74	+0.2
1,615,857	+		CCNA_01504	0.74	+2.1
1,615,857	+		CCNA_01504	0.74	+0.6
1,615,865	-		CCNA_01504	0.75	+0.0
1,615,865	-		CCNA_01504	0.75	-1.1
1,615,865	-		CCNA_01504	0.75	-0.9
1,615,865	-		CCNA_01504	0.75	-0.2
1,615,865	-		CCNA_01504	0.75	+2.4
1,615,878	-		CCNA_01504	0.75	+0.0
1,615,914	+		CCNA_01504	0.77	-0.2
1,615,936	-		CCNA_01504	0.78	+0.3
1,615,945	-		CCNA_01504	0.79	-0.9
1,615,945	-		CCNA_01504	0.79	-0.7
1,615,961	+		CCNA_01504	0.79	+1.2
1,615,961	+		CCNA_01504	0.79	+1.6
1,615,961	+		CCNA_01504	0.79	-0.1
1,615,969	-		CCNA_01504	0.80	-0.1
1,615,969	-		CCNA_01504	0.80	+2.4
1,615,969	-		CCNA_01504	0.80	-0.1
1,616,046	-		CCNA_01504	0.83	-0.7
1,616,060	+		CCNA_01504	0.84	-0.1
1,616,060	+		CCNA_01504	0.84	-1.4
1,616,068	-		CCNA_01504	0.84	+0.0
1,616,068	-		CCNA_01504	0.84	-0.5
1,616,068	-		CCNA_01504	0.84	+1.6
1,616,068	-		CCNA_01504	0.84	-0.5
1,616,068	-		CCNA_01504	0.84	-0.9
1,616,068	-		CCNA_01504	0.84	-1.2
1,616,070	-		CCNA_01504	0.85	+0.9
1,616,097	+		CCNA_01504	0.86	-0.0
1,616,105	-		CCNA_01504	0.86	+2.1
1,616,105	-		CCNA_01504	0.86	+3.4
1,616,110	-		CCNA_01504	0.86	-1.6
1,616,130	+		CCNA_01504	0.87	-1.0
1,616,157	+		CCNA_01504	0.89	+1.0
1,616,165	-		CCNA_01504	0.89	-1.6
1,616,165	-		CCNA_01504	0.89	+2.0
1,616,211	-				-0.2
1,616,212	-				+2.2
1,616,237	-				+0.0
1,616,254	+				+1.3
1,616,262	-				+0.7
1,616,262	-				-0.8
1,616,267	-				+1.3
1,616,300	-				-0.3
1,616,300	-				+0.9
1,616,317	-				-1.7
1,616,343	-				+0.7
1,616,368	-				+2.2
1,616,444	+				-1.5
1,616,483	+		CCNA_01505	0.15	-0.8
1,616,493	-		CCNA_01505	0.18	+1.0
1,616,559	+		CCNA_01505	0.40	+1.4
1,616,581	-		CCNA_01505	0.48	+3.7
1,616,596	+		CCNA_01505	0.52	-1.3
1,616,604	-		CCNA_01505	0.55	+3.6
1,616,673	-		CCNA_01505	0.78	+1.7
1,616,682	-		CCNA_01505	0.81	+3.1
1,616,741	-				+1.4
1,616,741	-				+1.6
1,616,741	-				+2.9
1,616,751	-				+2.1
1,616,780	-				+1.5
1,616,788	-				+1.3
1,616,827	-				+2.4
1,616,852	-				+0.8
1,616,869	-				+2.0
1,616,892	+		CCNA_01506	0.12	+1.5
1,616,894	-		CCNA_01506	0.12	+1.6
1,616,900	-		CCNA_01506	0.13	+2.1
1,616,965	-		CCNA_01506	0.22	+0.8
1,617,022	-		CCNA_01506	0.29	+0.3
1,617,022	-		CCNA_01506	0.29	+0.6
1,617,029	+		CCNA_01506	0.30	+0.1
1,617,037	-		CCNA_01506	0.31	-0.6
1,617,054	-		CCNA_01506	0.34	-0.1
1,617,092	-		CCNA_01506	0.39	+1.0
1,617,119	-		CCNA_01506	0.42	+1.7
1,617,139	+		CCNA_01506	0.45	-0.5
1,617,147	+		CCNA_01506	0.46	-0.1
1,617,153	-		CCNA_01506	0.47	+1.4
1,617,183	+		CCNA_01506	0.51	+0.6
1,617,191	-		CCNA_01506	0.52	-1.8
1,617,252	+		CCNA_01506	0.60	+2.1
1,617,252	+		CCNA_01506	0.60	-0.6
1,617,252	+		CCNA_01506	0.60	+0.1
1,617,252	+		CCNA_01506	0.60	+1.5
1,617,257	+		CCNA_01506	0.61	-0.8
1,617,259	+		CCNA_01506	0.61	+1.7
1,617,260	-		CCNA_01506	0.61	-0.9
1,617,260	-		CCNA_01506	0.61	+3.1
1,617,285	+		CCNA_01506	0.65	-0.1
1,617,286	-		CCNA_01506	0.65	+0.1
1,617,286	-		CCNA_01506	0.65	-0.9
1,617,298	+				+2.9
1,617,312	+		CCNA_01506	0.68	+2.3
1,617,319	+		CCNA_01506	0.69	-0.9
1,617,321	-		CCNA_01506	0.70	+1.2
1,617,327	-		CCNA_01506	0.70	+0.6
1,617,327	-		CCNA_01506	0.70	+0.8
1,617,327	-		CCNA_01506	0.70	+2.1
1,617,332	-		CCNA_01506	0.71	+0.5
1,617,332	-		CCNA_01506	0.71	+1.5
1,617,332	-		CCNA_01506	0.71	-1.3
1,617,416	-		CCNA_01506	0.82	+2.0
1,617,418	-		CCNA_01506	0.83	-0.1
1,617,422	+		CCNA_01506	0.83	-1.3
1,617,422	+		CCNA_01506	0.83	-0.2
1,617,425	-		CCNA_01506	0.84	+1.1
1,617,425	-		CCNA_01506	0.84	+0.5
1,617,476	+				+1.9
1,617,484	-				-0.3
1,617,491	+				+0.3
1,617,494	-				+0.2
1,617,578	+				+0.3
1,617,586	-				+0.2
1,617,586	-				-0.4
1,617,586	-				+1.7
1,617,590	+				-0.8
1,617,615	-		CCNA_01507	0.11	-1.1
1,617,674	-		CCNA_01507	0.20	-0.9
1,617,674	-		CCNA_01507	0.20	-0.2
1,617,674	-		CCNA_01507	0.20	+0.5
1,617,676	-		CCNA_01507	0.20	-0.5
1,617,723	-		CCNA_01507	0.27	+0.1
1,617,723	-		CCNA_01507	0.27	-0.7
1,617,726	+		CCNA_01507	0.28	+0.1
1,617,733	-		CCNA_01507	0.29	-0.1
1,617,734	-		CCNA_01507	0.29	-0.6
1,617,734	-		CCNA_01507	0.29	+0.0
1,617,736	+		CCNA_01507	0.29	+2.1