Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01490

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,597,357	-		CCNA_01489	0.41	-0.6
1,597,359	-		CCNA_01489	0.41	+1.2
1,597,361	+		CCNA_01489	0.41	-1.0
1,597,458	-		CCNA_01489	0.47	+0.7
1,597,463	-		CCNA_01489	0.47	-0.1
1,597,476	-		CCNA_01489	0.48	+1.3
1,597,510	+		CCNA_01489	0.50	+0.9
1,597,510	+		CCNA_01489	0.50	-1.4
1,597,510	+		CCNA_01489	0.50	-0.2
1,597,510	+		CCNA_01489	0.50	-2.7
1,597,510	+		CCNA_01489	0.50	-0.5
1,597,518	-		CCNA_01489	0.51	-0.5
1,597,555	-		CCNA_01489	0.53	+0.6
1,597,582	-		CCNA_01489	0.55	+0.3
1,597,593	-		CCNA_01489	0.56	+0.5
1,597,618	+		CCNA_01489	0.57	+0.4
1,597,637	+		CCNA_01489	0.59	+0.6
1,597,645	-		CCNA_01489	0.59	+1.8
1,597,655	+		CCNA_01489	0.60	+0.7
1,597,679	-		CCNA_01489	0.61	+0.8
1,597,707	-		CCNA_01489	0.63	+2.1
1,597,717	+		CCNA_01489	0.64	+0.3
1,597,741	+		CCNA_01489	0.65	-0.0
1,597,741	+		CCNA_01489	0.65	-1.2
1,597,819	+		CCNA_01489	0.70	-0.4
1,597,909	+		CCNA_01489	0.76	-0.9
1,597,915	-		CCNA_01489	0.77	+2.1
1,597,933	+		CCNA_01489	0.78	+1.1
1,597,991	+		CCNA_01489	0.81	+0.5
1,597,991	+		CCNA_01489	0.81	+1.2
1,597,999	+		CCNA_01489	0.82	+1.2
1,598,020	+		CCNA_01489	0.83	+1.4
1,598,020	+		CCNA_01489	0.83	+0.2
1,598,028	-		CCNA_01489	0.84	+1.4
1,598,028	-		CCNA_01489	0.84	+1.6
1,598,028	-		CCNA_01489	0.84	+0.8
1,598,060	+		CCNA_01489	0.86	-0.0
1,598,063	+		CCNA_01489	0.86	-0.6
1,598,068	-		CCNA_01489	0.86	+0.5
1,598,071	-		CCNA_01489	0.87	-0.2
1,598,071	-		CCNA_01489	0.87	+0.1
1,598,081	-		CCNA_01489	0.87	-0.4
1,598,107	+		CCNA_01489	0.89	-0.7
1,598,128	+				+0.2
1,598,212	+				-0.6
1,598,231	+				+0.5
1,598,261	+				-0.1
1,598,308	-				-1.0
1,598,324	-				+1.8
1,598,344	+				-1.0
1,598,430	-				+0.3
1,598,479	-				+1.6
1,598,507	+				+1.2
1,598,515	-		CCNA_01490	0.10	+1.2
1,598,529	-		CCNA_01490	0.11	-0.2
1,598,555	-		CCNA_01490	0.13	-0.1
1,598,558	+		CCNA_01490	0.13	-0.8
1,598,558	+		CCNA_01490	0.13	+1.0
1,598,590	-		CCNA_01490	0.15	-0.0
1,598,598	+		CCNA_01490	0.15	-0.1
1,598,606	-		CCNA_01490	0.16	-1.1
1,598,659	+		CCNA_01490	0.19	-1.7
1,598,667	-		CCNA_01490	0.19	+1.0
1,598,667	-		CCNA_01490	0.19	+0.5
1,598,668	+		CCNA_01490	0.19	-0.7
1,598,668	+		CCNA_01490	0.19	-0.3
1,598,672	-		CCNA_01490	0.20	-0.0
1,598,676	-		CCNA_01490	0.20	+0.5
1,598,686	+		CCNA_01490	0.21	+0.8
1,598,707	+		CCNA_01490	0.22	-1.5
1,598,732	+		CCNA_01490	0.23	-0.0
1,598,762	+		CCNA_01490	0.25	-0.2
1,598,764	+		CCNA_01490	0.25	+0.5
1,598,764	+		CCNA_01490	0.25	-0.2
1,598,764	+		CCNA_01490	0.25	+0.0
1,598,764	+		CCNA_01490	0.25	-0.3
1,598,772	+		CCNA_01490	0.26	+0.5
1,598,837	-		CCNA_01490	0.30	+1.6
1,598,895	+		CCNA_01490	0.33	+0.8
1,598,903	-		CCNA_01490	0.34	+1.5
1,598,904	-		CCNA_01490	0.34	+3.7
1,598,909	+		CCNA_01490	0.34	+0.8
1,598,915	+		CCNA_01490	0.34	-1.7
1,598,933	+		CCNA_01490	0.36	+2.1
1,598,965	-		CCNA_01490	0.38	+1.4
1,598,984	-		CCNA_01490	0.39	-1.0
1,598,985	+		CCNA_01490	0.39	+0.8
1,598,992	-		CCNA_01490	0.39	+0.4
1,599,007	+		CCNA_01490	0.40	+1.5
1,599,051	+		CCNA_01490	0.43	+0.4
1,599,096	+		CCNA_01490	0.46	-0.0
1,599,101	+		CCNA_01490	0.46	+1.0
1,599,101	+		CCNA_01490	0.46	+0.5
1,599,109	-		CCNA_01490	0.46	-0.2
1,599,141	+		CCNA_01490	0.48	+0.2
1,599,152	+		CCNA_01490	0.49	-1.0
1,599,155	-		CCNA_01490	0.49	+1.4
1,599,175	+		CCNA_01490	0.50	+0.8
1,599,207	-		CCNA_01490	0.52	-1.7
1,599,211	-		CCNA_01490	0.53	-0.6
1,599,221	+		CCNA_01490	0.53	+0.1
1,599,333	+		CCNA_01490	0.60	+2.4
1,599,351	+		CCNA_01490	0.61	+0.7
1,599,351	+		CCNA_01490	0.61	+0.5
1,599,351	+		CCNA_01490	0.61	+0.8
1,599,351	+		CCNA_01490	0.61	+0.6
1,599,351	+		CCNA_01490	0.61	+2.8
1,599,351	+		CCNA_01490	0.61	+0.7
1,599,351	+		CCNA_01490	0.61	-0.5
1,599,359	-		CCNA_01490	0.62	+0.4
1,599,392	-		CCNA_01490	0.64	-0.1
1,599,441	-		CCNA_01490	0.67	+0.9
1,599,460	-		CCNA_01490	0.68	+0.4
1,599,462	+		CCNA_01490	0.68	+0.2
1,599,533	-		CCNA_01490	0.72	+2.6
1,599,588	-		CCNA_01490	0.76	-1.2
1,599,593	-		CCNA_01490	0.76	-1.2
1,599,651	-		CCNA_01490	0.79	+0.7
1,599,669	-		CCNA_01490	0.80	+0.6
1,599,755	-		CCNA_01490	0.86	+1.4
1,599,760	+		CCNA_01490	0.86	-0.5
1,599,845	-				+0.2
1,599,847	+				+0.8
1,599,848	+				+0.6
1,599,854	-				-0.9
1,599,882	+				+1.2
1,599,933	-				+0.1
1,599,969	+				+1.7
1,599,969	+				+2.0
1,599,974	+				+0.8
1,599,997	+				+2.3
1,599,997	+				+1.6
1,599,997	+				+1.7
1,599,997	+				-1.2
1,600,005	-				+0.4
1,600,005	-				-0.1
1,600,005	-				+0.6
1,600,012	+				-1.0
1,600,014	+				+0.5
1,600,021	+				-0.9
1,600,022	-				+1.6
1,600,022	-				+1.5
1,600,053	-				-0.4
1,600,053	-				+0.6
1,600,053	-				+0.5
1,600,053	-				+1.6
1,600,060	+				+0.7
1,600,090	+				-0.6
1,600,106	-				-0.7
1,600,138	-		CCNA_01491	0.12	+0.9
1,600,143	+		CCNA_01491	0.12	+0.7
1,600,148	+		CCNA_01491	0.13	+0.4
1,600,151	-		CCNA_01491	0.13	+0.8
1,600,156	-		CCNA_01491	0.14	-0.8
1,600,187	-		CCNA_01491	0.16	+0.6
1,600,187	-		CCNA_01491	0.16	-0.4
1,600,237	+		CCNA_01491	0.20	+0.4
1,600,257	-		CCNA_01491	0.22	+0.5
1,600,257	-		CCNA_01491	0.22	+1.2
1,600,331	-		CCNA_01491	0.29	-1.5
1,600,360	-		CCNA_01491	0.31	+1.2
1,600,360	-		CCNA_01491	0.31	-1.1
1,600,360	-		CCNA_01491	0.31	+0.6
1,600,385	-		CCNA_01491	0.33	+2.1
1,600,395	+		CCNA_01491	0.34	+0.2
1,600,423	-		CCNA_01491	0.37	+0.1
1,600,434	+		CCNA_01491	0.37	+1.1
1,600,435	+		CCNA_01491	0.38	-0.3
1,600,435	+		CCNA_01491	0.38	-0.2
1,600,438	-		CCNA_01491	0.38	+0.2
1,600,443	-		CCNA_01491	0.38	+1.0
1,600,443	-		CCNA_01491	0.38	-0.5
1,600,443	-		CCNA_01491	0.38	-0.0
1,600,486	+		CCNA_01491	0.42	+0.4
1,600,494	-		CCNA_01491	0.43	-0.9
1,600,500	-		CCNA_01491	0.43	+1.3
1,600,515	+		CCNA_01491	0.44	+0.4
1,600,523	-		CCNA_01491	0.45	+0.9
1,600,576	-		CCNA_01491	0.50	+0.3
1,600,603	+		CCNA_01491	0.52	-0.8
1,600,742	+		CCNA_01491	0.64	+1.6
1,600,764	-		CCNA_01491	0.66	+0.2
1,600,782	-		CCNA_01491	0.67	-0.5
1,600,787	+		CCNA_01491	0.68	+1.8
1,600,787	+		CCNA_01491	0.68	+0.2
1,600,787	+		CCNA_01491	0.68	+1.4
1,600,795	-		CCNA_01491	0.69	-0.7
1,600,795	-		CCNA_01491	0.69	+0.0
1,600,815	-		CCNA_01491	0.70	+1.1
1,600,863	+		CCNA_01491	0.74	-1.4
1,600,877	-		CCNA_01491	0.76	+0.3
1,600,932	-		CCNA_01491	0.80	+0.2
1,600,944	-		CCNA_01491	0.81	-0.3
1,600,951	-		CCNA_01491	0.82	-0.6
1,600,966	+		CCNA_01491	0.83	+1.8
1,600,970	-		CCNA_01491	0.84	+1.2