Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01481

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,587,872	+		CCNA_01479	0.72	+0.5
1,587,872	+		CCNA_01479	0.72	+1.4
1,587,872	+		CCNA_01479	0.72	+0.9
1,587,872	+		CCNA_01479	0.72	+0.6
1,587,873	+		CCNA_01479	0.72	+0.2
1,587,911	-		CCNA_01479	0.74	-0.3
1,587,920	+		CCNA_01479	0.75	+1.6
1,587,925	+		CCNA_01479	0.75	-0.2
1,587,961	-		CCNA_01479	0.77	-0.5
1,587,962	+		CCNA_01479	0.77	-0.7
1,587,962	+		CCNA_01479	0.77	+0.2
1,587,962	+		CCNA_01479	0.77	+1.1
1,587,962	+		CCNA_01479	0.77	+1.2
1,587,962	+		CCNA_01479	0.77	+1.6
1,587,962	+		CCNA_01479	0.77	+1.7
1,587,970	-		CCNA_01479	0.77	-0.2
1,587,970	-		CCNA_01479	0.77	+0.7
1,587,970	-		CCNA_01479	0.77	+1.6
1,587,970	-		CCNA_01479	0.77	-0.2
1,587,970	-		CCNA_01479	0.77	+0.0
1,587,980	-		CCNA_01479	0.77	+0.6
1,588,019	+		CCNA_01479	0.79	-0.4
1,588,019	+		CCNA_01479	0.79	+1.4
1,588,019	+		CCNA_01479	0.79	-1.5
1,588,027	-		CCNA_01479	0.80	-0.7
1,588,028	+		CCNA_01479	0.80	+1.0
1,588,041	-		CCNA_01479	0.80	+0.7
1,588,049	-		CCNA_01479	0.81	+1.4
1,588,058	+		CCNA_01479	0.81	-0.8
1,588,074	+		CCNA_01479	0.82	-0.3
1,588,079	+		CCNA_01479	0.82	-1.4
1,588,124	+		CCNA_01479	0.84	+0.5
1,588,124	+		CCNA_01479	0.84	+0.4
1,588,124	+		CCNA_01479	0.84	-0.8
1,588,150	-		CCNA_01479	0.86	-0.9
1,588,175	+		CCNA_01479	0.87	-1.0
1,588,175	+		CCNA_01479	0.87	-0.4
1,588,190	+		CCNA_01479	0.88	-1.5
1,588,198	-		CCNA_01479	0.88	-0.6
1,588,200	+		CCNA_01479	0.88	-1.1
1,588,237	+		CCNA_01479	0.90	+0.7
1,588,281	+				+0.6
1,588,289	-				+2.6
1,588,297	-				-0.8
1,588,308	-				+0.5
1,588,330	-				-0.8
1,588,335	+				+1.2
1,588,379	+				-1.1
1,588,410	+				+1.4
1,588,429	-				-0.7
1,588,433	+				+1.1
1,588,441	-				+0.5
1,588,573	-		CCNA_01480	0.32	-1.4
1,588,666	+		CCNA_01480	0.55	+1.2
1,588,674	-		CCNA_01480	0.57	+0.7
1,588,744	-		CCNA_01480	0.74	+0.1
1,588,763	+		CCNA_01480	0.79	-0.2
1,588,763	+		CCNA_01480	0.79	+1.6
1,588,763	+		CCNA_01480	0.79	+1.7
1,588,769	-		CCNA_01480	0.80	-0.5
1,588,771	-		CCNA_01480	0.81	-0.8
1,588,843	+				+0.1
1,588,858	+				+1.4
1,588,912	+				+0.9
1,588,912	+				+1.9
1,588,912	+				+3.0
1,588,912	+				-0.0
1,588,920	-				+0.8
1,588,920	-				-1.1
1,588,920	-				+0.9
1,588,978	+				-1.6
1,588,978	+				+0.3
1,588,978	-				+0.1
1,589,007	-				-1.6
1,589,019	+				+1.9
1,589,027	-				-1.2
1,589,038	+		CCNA_01481	0.10	-0.2
1,589,041	-		CCNA_01481	0.10	+0.8
1,589,088	+		CCNA_01481	0.13	+0.0
1,589,096	-		CCNA_01481	0.14	-0.0
1,589,195	-		CCNA_01481	0.19	+1.1
1,589,198	-		CCNA_01481	0.19	+1.8
1,589,236	+		CCNA_01481	0.22	+2.9
1,589,244	-		CCNA_01481	0.22	-0.4
1,589,266	+		CCNA_01481	0.23	+0.6
1,589,290	+		CCNA_01481	0.25	-0.4
1,589,376	+		CCNA_01481	0.30	+1.4
1,589,383	+		CCNA_01481	0.30	+3.6
1,589,383	+		CCNA_01481	0.30	+2.0
1,589,383	+		CCNA_01481	0.30	+1.2
1,589,383	+		CCNA_01481	0.30	-0.4
1,589,383	+		CCNA_01481	0.30	+2.1
1,589,391	-		CCNA_01481	0.31	-1.2
1,589,391	-		CCNA_01481	0.31	+0.3
1,589,391	-		CCNA_01481	0.31	+0.9
1,589,391	-		CCNA_01481	0.31	-0.1
1,589,409	+		CCNA_01481	0.32	+0.8
1,589,426	+		CCNA_01481	0.33	-0.7
1,589,426	+		CCNA_01481	0.33	-1.1
1,589,427	-		CCNA_01481	0.33	+0.9
1,589,434	-		CCNA_01481	0.33	-0.0
1,589,531	+		CCNA_01481	0.39	-0.2
1,589,561	+		CCNA_01481	0.40	+0.9
1,589,607	-		CCNA_01481	0.43	+1.2
1,589,626	+		CCNA_01481	0.44	+1.6
1,589,635	-		CCNA_01481	0.45	-0.5
1,589,678	-		CCNA_01481	0.47	+1.4
1,589,693	-		CCNA_01481	0.48	-0.1
1,589,751	+		CCNA_01481	0.51	-0.3
1,589,787	+		CCNA_01481	0.53	-0.7
1,589,792	+		CCNA_01481	0.53	+1.3
1,589,792	+		CCNA_01481	0.53	+0.6
1,589,833	+		CCNA_01481	0.56	-1.3
1,589,839	+		CCNA_01481	0.56	-1.4
1,589,868	+		CCNA_01481	0.58	-1.3
1,589,868	+		CCNA_01481	0.58	+1.3
1,589,873	+		CCNA_01481	0.58	+0.7
1,589,876	-		CCNA_01481	0.58	+0.1
1,589,878	+		CCNA_01481	0.58	+2.2
1,589,878	+		CCNA_01481	0.58	+2.2
1,589,886	-		CCNA_01481	0.59	+0.7
1,589,886	-		CCNA_01481	0.59	+1.0
1,589,901	+		CCNA_01481	0.60	-0.2
1,589,904	-		CCNA_01481	0.60	+1.0
1,589,916	+		CCNA_01481	0.61	-0.9
1,589,942	+		CCNA_01481	0.62	-2.2
1,590,000	-		CCNA_01481	0.65	-2.2
1,590,005	-		CCNA_01481	0.66	-1.0
1,590,031	+		CCNA_01481	0.67	+0.1
1,590,126	-		CCNA_01481	0.73	+1.6
1,590,160	-		CCNA_01481	0.75	-0.3
1,590,172	-		CCNA_01481	0.75	+1.4
1,590,226	+		CCNA_01481	0.78	+1.8
1,590,226	+		CCNA_01481	0.78	+1.2
1,590,239	-		CCNA_01481	0.79	+0.5
1,590,314	+		CCNA_01481	0.83	+1.4
1,590,314	+		CCNA_01481	0.83	+0.9
1,590,314	+		CCNA_01481	0.83	-0.0
1,590,324	+		CCNA_01481	0.84	-1.0
1,590,332	+		CCNA_01481	0.84	+1.3
1,590,332	+		CCNA_01481	0.84	-0.6
1,590,332	+		CCNA_01481	0.84	-0.7
1,590,332	+		CCNA_01481	0.84	-0.5
1,590,332	+		CCNA_01481	0.84	-1.0
1,590,332	+		CCNA_01481	0.84	+0.4
1,590,332	+		CCNA_01481	0.84	+0.1
1,590,332	+		CCNA_01481	0.84	+0.7
1,590,332	-		CCNA_01481	0.84	-0.3
1,590,340	-		CCNA_01481	0.85	+0.1
1,590,340	-		CCNA_01481	0.85	+0.8
1,590,340	-		CCNA_01481	0.85	+0.6
1,590,340	-		CCNA_01481	0.85	-0.7
1,590,340	-		CCNA_01481	0.85	-0.5
1,590,340	-		CCNA_01481	0.85	+1.8
1,590,414	-		CCNA_01481	0.89	+0.8
1,590,437	+				+2.4
1,590,466	+				+0.5
1,590,466	+				-0.3
1,590,470	+				+0.8
1,590,474	-				+0.1
1,590,530	+				-0.5
1,590,541	-				+1.0
1,590,633	+				+3.2
1,590,633	+				-1.3
1,590,641	-				+1.1
1,590,656	+				+0.1
1,590,671	+				-0.3
1,590,671	-				+0.1
1,590,678	+				+0.6
1,590,689	+				+0.4
1,590,737	-				-1.1
1,590,757	-				-2.1
1,590,758	-				+0.2
1,590,821	+				-0.9
1,590,938	-		CCNA_01483	0.32	+0.3
1,591,021	-		CCNA_01483	0.69	-1.1
1,591,023	+		CCNA_01483	0.70	+2.0
1,591,023	+		CCNA_01483	0.70	-0.2
1,591,023	+		CCNA_01483	0.70	+0.8
1,591,031	-		CCNA_01483	0.74	-0.2
1,591,036	-		CCNA_01483	0.76	+0.2
1,591,089	+				+1.4
1,591,099	+				-1.6
1,591,099	+				-1.9
1,591,104	+				-2.2
1,591,104	+				-0.3
1,591,104	+				-1.1
1,591,107	-				-0.3
1,591,107	-				-0.2
1,591,109	+				-1.6
1,591,112	-				+0.7
1,591,112	-				+0.1
1,591,118	+				+0.7
1,591,191	+		CCNA_01484	0.19	-0.5
1,591,299	-		CCNA_01484	0.45	+0.7
1,591,311	-		CCNA_01484	0.48	-0.4
1,591,311	-		CCNA_01484	0.48	-0.8
1,591,311	-		CCNA_01484	0.48	-0.5
1,591,357	+		CCNA_01484	0.59	+0.9
1,591,357	+		CCNA_01484	0.59	-1.8
1,591,364	+		CCNA_01484	0.60	+0.2
1,591,369	+		CCNA_01484	0.61	+1.7
1,591,386	-		CCNA_01484	0.65	+0.5
1,591,442	+		CCNA_01484	0.79	+0.2
1,591,443	-		CCNA_01484	0.79	-0.2
1,591,542	+				+0.2
1,591,553	+				+0.1
1,591,581	-				-1.4
1,591,586	-				+0.7
1,591,588	+				-0.1
1,591,588	+				-0.2
1,591,596	-				-1.2
1,591,596	-				-0.2
1,591,596	-				+2.1