Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01460

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,567,595	-				+1.0
1,567,605	-				+1.5
1,567,607	+				+0.3
1,567,607	+				-0.2
1,567,615	-				-0.6
1,567,628	-				+0.9
1,567,696	+		CCNA_01457	0.28	-0.3
1,567,770	-		CCNA_01457	0.58	+0.4
1,567,792	+		CCNA_01457	0.66	+0.1
1,567,896	+				-0.9
1,567,896	+				-1.4
1,567,903	+				+0.9
1,567,903	+				-1.0
1,567,904	-				+4.4
1,567,913	+		CCNA_01458	0.11	-0.4
1,567,922	+		CCNA_01458	0.14	+1.2
1,567,997	+		CCNA_01458	0.38	-1.6
1,567,997	-				+2.4
1,568,024	+		CCNA_01458	0.47	+2.8
1,568,059	+		CCNA_01458	0.58	+0.9
1,568,100	+		CCNA_01458	0.72	-1.6
1,568,130	+		CCNA_01458	0.81	+0.1
1,568,135	+		CCNA_01458	0.83	+1.0
1,568,135	+		CCNA_01458	0.83	+0.6
1,568,143	-		CCNA_01458	0.85	+4.1
1,568,143	-		CCNA_01458	0.85	+2.6
1,568,143	-		CCNA_01458	0.85	+2.5
1,568,143	-		CCNA_01458	0.85	+1.8
1,568,227	+		CCNA_01459	0.15	-1.1
1,568,240	+		CCNA_01459	0.20	-1.2
1,568,240	+		CCNA_01459	0.20	-0.1
1,568,248	-		CCNA_01459	0.23	+0.9
1,568,248	-		CCNA_01459	0.23	+1.3
1,568,248	-		CCNA_01459	0.23	+3.0
1,568,248	-		CCNA_01459	0.23	+0.0
1,568,250	-		CCNA_01459	0.24	-0.8
1,568,270	+		CCNA_01459	0.32	-0.8
1,568,285	+		CCNA_01459	0.38	-1.5
1,568,287	-		CCNA_01459	0.38	+1.2
1,568,373	+		CCNA_01459	0.72	-1.3
1,568,394	-		CCNA_01459	0.80	+3.8
1,568,440	+				-0.1
1,568,448	-				-1.6
1,568,448	-				-0.7
1,568,448	-				-0.1
1,568,448	-				+0.4
1,568,482	+				-0.3
1,568,500	-				+4.1
1,568,500	-				+4.2
1,568,504	-				+0.3
1,568,572	-		CCNA_01460	0.25	+0.3
1,568,574	-		CCNA_01460	0.26	+0.8
1,568,574	-		CCNA_01460	0.26	+1.0
1,568,606	-		CCNA_01460	0.40	+2.0
1,568,617	+		CCNA_01460	0.45	-0.5
1,568,637	-		CCNA_01460	0.54	-0.3
1,568,663	+		CCNA_01460	0.66	-1.4
1,568,666	-		CCNA_01460	0.68	+0.3
1,568,671	-		CCNA_01460	0.70	-1.4
1,568,681	-		CCNA_01460	0.74	+0.2
1,568,681	-		CCNA_01460	0.74	+0.7
1,568,682	-		CCNA_01460	0.75	-0.3
1,568,749	+				-1.8
1,568,831	+		CCNA_01461	0.22	+1.4
1,568,831	+		CCNA_01461	0.22	+1.2
1,568,842	+		CCNA_01461	0.25	-0.6
1,568,850	-		CCNA_01461	0.28	+2.4
1,568,856	-		CCNA_01461	0.30	+0.0
1,568,907	+		CCNA_01461	0.47	+1.8
1,568,907	+		CCNA_01461	0.47	+0.9
1,568,907	+		CCNA_01461	0.47	-0.6
1,568,907	+		CCNA_01461	0.47	+0.5
1,568,907	+		CCNA_01461	0.47	+1.8
1,568,907	+		CCNA_01461	0.47	+0.2
1,568,907	+		CCNA_01461	0.47	-0.8
1,568,915	-		CCNA_01461	0.49	+0.0
1,568,915	-		CCNA_01461	0.49	-1.6
1,568,915	-		CCNA_01461	0.49	-0.6
1,568,915	-		CCNA_01461	0.49	+0.0
1,568,915	-		CCNA_01461	0.49	-1.4
1,568,915	-		CCNA_01461	0.49	+1.5
1,568,915	-		CCNA_01461	0.49	-0.4
1,568,915	-		CCNA_01461	0.49	+0.1
1,568,940	+		CCNA_01461	0.58	+1.8
1,568,948	-		CCNA_01461	0.60	-1.1
1,568,952	+		CCNA_01461	0.61	+2.0
1,569,007	+				+1.6
1,569,015	-		CCNA_01461	0.82	-0.7
1,569,021	+		CCNA_01461	0.84	-0.9
1,569,030	-		CCNA_01461	0.87	+0.3
1,569,031	+				+2.4
1,569,055	+				+0.5
1,569,063	-				-1.4
1,569,063	-				+0.3
1,569,086	+				-0.4
1,569,096	+				-0.8
1,569,104	-				-0.7
1,569,129	-				-0.8
1,569,177	-				-0.3
1,569,199	-				+0.9
1,569,281	+				+0.3
1,569,299	+				-1.9
1,569,367	+				-0.8
1,569,448	+		CCNA_01462	0.13	-0.1
1,569,448	+		CCNA_01462	0.13	-0.6
1,569,448	+		CCNA_01462	0.13	+0.8
1,569,448	-		CCNA_01462	0.13	+2.1
1,569,448	-		CCNA_01462	0.13	-0.2
1,569,456	-		CCNA_01462	0.14	-0.9
1,569,456	-		CCNA_01462	0.14	+1.8
1,569,470	-		CCNA_01462	0.15	+0.7
1,569,481	+		CCNA_01462	0.16	-1.0
1,569,502	-		CCNA_01462	0.18	-0.0
1,569,603	+		CCNA_01462	0.26	+0.8
1,569,611	-		CCNA_01462	0.27	-0.3
1,569,625	+		CCNA_01462	0.28	+0.1
1,569,625	+		CCNA_01462	0.28	-0.2
1,569,650	+				+2.4
1,569,658	-		CCNA_01462	0.31	-1.0
1,569,681	+		CCNA_01462	0.33	+0.8
1,569,727	-		CCNA_01462	0.37	-0.0