Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01424

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,540,561	+				-1.9
1,540,676	-				+0.3
1,540,677	-				-0.8
1,540,688	+				+0.5
1,540,745	+		CCNA_01424	0.15	+0.9
1,540,753	-		CCNA_01424	0.16	+0.7
1,540,767	+		CCNA_01424	0.19	+1.2
1,540,775	-		CCNA_01424	0.21	+1.0
1,540,959	+		CCNA_01424	0.58	-0.6
1,540,959	+		CCNA_01424	0.58	+0.4
1,540,965	-		CCNA_01424	0.59	-0.4
1,540,969	+		CCNA_01424	0.60	+0.5
1,540,977	-		CCNA_01424	0.62	-1.1
1,541,006	+		CCNA_01424	0.67	+2.2
1,541,011	+		CCNA_01424	0.68	-0.5
1,541,029	-		CCNA_01424	0.72	+2.0
1,541,031	+		CCNA_01424	0.73	-1.2
1,541,039	+		CCNA_01424	0.74	+1.3
1,541,044	+		CCNA_01424	0.75	+0.7
1,541,044	+		CCNA_01424	0.75	-2.0
1,541,047	-		CCNA_01424	0.76	-0.3
1,541,052	-		CCNA_01424	0.77	-2.5
1,541,052	-		CCNA_01424	0.77	-0.9
1,541,052	-		CCNA_01424	0.77	+1.5
1,541,052	-		CCNA_01424	0.77	-1.4
1,541,052	-		CCNA_01424	0.77	-1.2
1,541,052	-		CCNA_01424	0.77	-1.7
1,541,058	+		CCNA_01424	0.78	-1.5
1,541,058	+		CCNA_01424	0.78	-1.1
1,541,058	+		CCNA_01424	0.78	+1.9
1,541,066	-		CCNA_01424	0.80	+0.7
1,541,066	-		CCNA_01424	0.80	+0.4
1,541,069	+		CCNA_01424	0.80	-1.1
1,541,168	-				-0.1
1,541,223	-				-0.4
1,541,225	+				+1.8
1,541,233	-				+2.0
1,541,270	-				-0.5
1,541,273	+				+1.3
1,541,273	+				+0.5
1,541,273	+				+1.3
1,541,299	+				+1.6
1,541,299	+				+0.6
1,541,381	-				+0.6
1,541,454	+				+1.5
1,541,462	-				-0.6
1,541,462	-				+1.5
1,541,464	+				+0.4
1,541,467	-				-0.5
1,541,467	-				+1.7
1,541,552	+				+0.7
1,541,552	+				+0.9
1,541,552	+				-1.2
1,541,552	+				-2.1
1,541,560	-				+0.2
1,541,560	-				-0.1
1,541,560	-				-1.4
1,541,579	+				-0.8
1,541,593	+				+1.8
1,541,624	+		CCNA_01425	0.10	+1.2
1,541,730	+		CCNA_01425	0.15	+0.4
1,541,730	+		CCNA_01425	0.15	-0.0
1,541,740	+		CCNA_01425	0.15	+1.0
1,541,740	+		CCNA_01425	0.15	-0.4
1,541,748	-		CCNA_01425	0.16	-0.4
1,541,748	-		CCNA_01425	0.16	-0.1
1,541,773	-		CCNA_01425	0.17	-0.4
1,541,805	-		CCNA_01425	0.19	-1.1
1,541,807	+		CCNA_01425	0.19	+1.1
1,541,812	+		CCNA_01425	0.19	+1.2
1,541,820	+		CCNA_01425	0.19	-0.7
1,541,842	+		CCNA_01425	0.20	+0.4
1,541,878	+		CCNA_01425	0.22	+1.8
1,541,886	-		CCNA_01425	0.22	-0.6
1,541,894	-		CCNA_01425	0.23	+0.6
1,541,943	+		CCNA_01425	0.25	-1.9
1,541,956	-		CCNA_01425	0.26	-1.9
1,541,958	+		CCNA_01425	0.26	-2.1
1,541,983	+		CCNA_01425	0.27	+0.6
1,542,002	+		CCNA_01425	0.28	-0.7
1,542,080	-		CCNA_01425	0.31	-1.9
1,542,104	+		CCNA_01425	0.32	+0.4
1,542,112	-		CCNA_01425	0.33	-0.6
1,542,112	-		CCNA_01425	0.33	+0.1
1,542,112	-		CCNA_01425	0.33	-0.2
1,542,136	+		CCNA_01425	0.34	+0.3
1,542,141	-		CCNA_01425	0.34	+1.3