Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01416

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01414 and CCNA_01415 are separated by 58 nucleotidesCCNA_01415 and CCNA_01416 are separated by 71 nucleotidesCCNA_01416 and CCNA_01417 are separated by 175 nucleotides CCNA_01414: CCNA_01414 - 3-hydroxyisobutyryl-CoA hydrolase, at 1,531,736 to 1,532,788 _01414 CCNA_01415: CCNA_01415 - methyltransferase, at 1,532,847 to 1,533,644 _01415 CCNA_01416: CCNA_01416 - 3-hydroxyisobutyrate dehydrogenase, at 1,533,716 to 1,534,612 _01416 CCNA_01417: CCNA_01417 - 5-aminolevulinic acid synthase, at 1,534,788 to 1,536,014 _01417 Position (kb) 1533 1534 1535Strain fitness (log2 ratio) -1 0 1 2 3at 1532.751 kb on + strandat 1532.799 kb on + strandat 1532.816 kb on + strandat 1532.857 kb on - strandat 1532.859 kb on + strandat 1532.877 kb on + strandat 1532.877 kb on + strandat 1533.035 kb on + strand, within CCNA_01415at 1533.035 kb on + strand, within CCNA_01415at 1533.045 kb on + strand, within CCNA_01415at 1533.053 kb on - strand, within CCNA_01415at 1533.053 kb on - strand, within CCNA_01415at 1533.053 kb on - strand, within CCNA_01415at 1533.060 kb on + strand, within CCNA_01415at 1533.073 kb on + strand, within CCNA_01415at 1533.100 kb on - strand, within CCNA_01415at 1533.146 kb on + strand, within CCNA_01415at 1533.147 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.160 kb on - strand, within CCNA_01415at 1533.160 kb on - strand, within CCNA_01415at 1533.161 kb on - strand, within CCNA_01415at 1533.161 kb on - strand, within CCNA_01415at 1533.161 kb on - strand, within CCNA_01415at 1533.187 kb on - strand, within CCNA_01415at 1533.187 kb on - strand, within CCNA_01415at 1533.199 kb on + strand, within CCNA_01415at 1533.290 kb on + strand, within CCNA_01415at 1533.309 kb on + strand, within CCNA_01415at 1533.364 kb on - strand, within CCNA_01415at 1533.439 kb on + strand, within CCNA_01415at 1533.447 kb on + strand, within CCNA_01415at 1533.457 kb on + strand, within CCNA_01415at 1533.457 kb on - strand, within CCNA_01415at 1533.467 kb on + strand, within CCNA_01415at 1533.478 kb on + strand, within CCNA_01415at 1533.486 kb on - strand, within CCNA_01415at 1533.486 kb on - strand, within CCNA_01415at 1533.488 kb on + strand, within CCNA_01415at 1533.488 kb on + strand, within CCNA_01415at 1533.488 kb on + strand, within CCNA_01415at 1533.493 kb on + strand, within CCNA_01415at 1533.496 kb on - strand, within CCNA_01415at 1533.496 kb on - strand, within CCNA_01415at 1533.501 kb on - strand, within CCNA_01415at 1533.502 kb on - strand, within CCNA_01415at 1533.528 kb on + strand, within CCNA_01415at 1533.528 kb on + strand, within CCNA_01415at 1533.575 kb on + strandat 1533.575 kb on + strandat 1533.731 kb on - strandat 1533.794 kb on - strandat 1533.796 kb on - strandat 1533.819 kb on + strand, within CCNA_01416at 1533.918 kb on - strand, within CCNA_01416at 1533.942 kb on - strand, within CCNA_01416at 1533.952 kb on - strand, within CCNA_01416at 1534.001 kb on + strand, within CCNA_01416at 1534.001 kb on + strand, within CCNA_01416at 1534.009 kb on - strand, within CCNA_01416at 1534.094 kb on - strand, within CCNA_01416at 1534.103 kb on + strand, within CCNA_01416at 1534.103 kb on + strand, within CCNA_01416at 1534.104 kb on + strand, within CCNA_01416at 1534.104 kb on - strand, within CCNA_01416at 1534.111 kb on - strand, within CCNA_01416at 1534.112 kb on - strand, within CCNA_01416at 1534.211 kb on - strand, within CCNA_01416at 1534.240 kb on + strand, within CCNA_01416at 1534.271 kb on + strand, within CCNA_01416at 1534.272 kb on + strand, within CCNA_01416at 1534.335 kb on + strand, within CCNA_01416at 1534.340 kb on + strand, within CCNA_01416at 1534.340 kb on + strand, within CCNA_01416at 1534.340 kb on + strand, within CCNA_01416at 1534.340 kb on + strand, within CCNA_01416at 1534.345 kb on + strand, within CCNA_01416at 1534.345 kb on + strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.353 kb on - strand, within CCNA_01416at 1534.366 kb on - strand, within CCNA_01416at 1534.371 kb on - strand, within CCNA_01416at 1534.371 kb on - strand, within CCNA_01416at 1534.371 kb on - strandat 1534.457 kb on - strand, within CCNA_01416at 1534.510 kb on + strand, within CCNA_01416at 1534.539 kb on - strandat 1534.539 kb on - strandat 1534.563 kb on + strandat 1534.587 kb on + strandat 1534.593 kb on - strandat 1534.714 kb on + strandat 1534.721 kb on + strandat 1534.781 kb on + strandat 1534.793 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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1,532,751 + +3.1
1,532,799 + +2.0
1,532,816 + +2.7
1,532,857 - +1.2
1,532,859 + +0.1
1,532,877 + +2.0
1,532,877 + +2.1
1,533,035 + CCNA_01415 0.24 +0.3
1,533,035 + CCNA_01415 0.24 +2.1
1,533,045 + CCNA_01415 0.25 -0.3
1,533,053 - CCNA_01415 0.26 +0.9
1,533,053 - CCNA_01415 0.26 +1.2
1,533,053 - CCNA_01415 0.26 +1.5
1,533,060 + CCNA_01415 0.27 +1.4
1,533,073 + CCNA_01415 0.28 +1.2
1,533,100 - CCNA_01415 0.32 +0.4
1,533,146 + CCNA_01415 0.37 +1.8
1,533,147 + CCNA_01415 0.38 +1.7
1,533,152 + CCNA_01415 0.38 +2.1
1,533,152 + CCNA_01415 0.38 +2.1
1,533,152 + CCNA_01415 0.38 +2.2
1,533,152 + CCNA_01415 0.38 +0.9
1,533,153 + CCNA_01415 0.38 +1.2
1,533,153 + CCNA_01415 0.38 +2.4
1,533,153 + CCNA_01415 0.38 +2.0
1,533,153 + CCNA_01415 0.38 +1.5
1,533,153 + CCNA_01415 0.38 +2.2
1,533,153 + CCNA_01415 0.38 +2.9
1,533,153 + CCNA_01415 0.38 +1.3
1,533,153 + CCNA_01415 0.38 +2.5
1,533,153 + CCNA_01415 0.38 +1.6
1,533,153 + CCNA_01415 0.38 +2.5
1,533,153 + CCNA_01415 0.38 +1.1
1,533,153 + CCNA_01415 0.38 +2.0
1,533,160 - CCNA_01415 0.39 -0.1
1,533,160 - CCNA_01415 0.39 +2.6
1,533,161 - CCNA_01415 0.39 +2.5
1,533,161 - CCNA_01415 0.39 +1.2
1,533,161 - CCNA_01415 0.39 +0.4
1,533,187 - CCNA_01415 0.43 +1.5
1,533,187 - CCNA_01415 0.43 -0.3
1,533,199 + CCNA_01415 0.44 +0.8
1,533,290 + CCNA_01415 0.56 +1.2
1,533,309 + CCNA_01415 0.58 +2.2
1,533,364 - CCNA_01415 0.65 +0.5
1,533,439 + CCNA_01415 0.74 +2.9
1,533,447 + CCNA_01415 0.75 +2.8
1,533,457 + CCNA_01415 0.76 +2.7
1,533,457 - CCNA_01415 0.76 -0.9
1,533,467 + CCNA_01415 0.78 +3.0
1,533,478 + CCNA_01415 0.79 +1.0
1,533,486 - CCNA_01415 0.80 +3.7
1,533,486 - CCNA_01415 0.80 +3.3
1,533,488 + CCNA_01415 0.80 +2.9
1,533,488 + CCNA_01415 0.80 +2.6
1,533,488 + CCNA_01415 0.80 +2.5
1,533,493 + CCNA_01415 0.81 +2.9
1,533,496 - CCNA_01415 0.81 +0.9
1,533,496 - CCNA_01415 0.81 +0.0
1,533,501 - CCNA_01415 0.82 +0.2
1,533,502 - CCNA_01415 0.82 +1.7
1,533,528 + CCNA_01415 0.85 +3.3
1,533,528 + CCNA_01415 0.85 +2.9
1,533,575 + +2.6
1,533,575 + +3.1
1,533,731 - +0.5
1,533,794 - +0.9
1,533,796 - +0.1
1,533,819 + CCNA_01416 0.11 -0.8
1,533,918 - CCNA_01416 0.23 -0.1
1,533,942 - CCNA_01416 0.25 +0.1
1,533,952 - CCNA_01416 0.26 -0.5
1,534,001 + CCNA_01416 0.32 +0.8
1,534,001 + CCNA_01416 0.32 +0.9
1,534,009 - CCNA_01416 0.33 +0.6
1,534,094 - CCNA_01416 0.42 +0.2
1,534,103 + CCNA_01416 0.43 +0.7
1,534,103 + CCNA_01416 0.43 +1.9
1,534,104 + CCNA_01416 0.43 +2.1
1,534,104 - CCNA_01416 0.43 +0.6
1,534,111 - CCNA_01416 0.44 +2.7
1,534,112 - CCNA_01416 0.44 +0.4
1,534,211 - CCNA_01416 0.55 -0.8
1,534,240 + CCNA_01416 0.58 +1.5
1,534,271 + CCNA_01416 0.62 +0.3
1,534,272 + CCNA_01416 0.62 +0.6
1,534,335 + CCNA_01416 0.69 +1.7
1,534,340 + CCNA_01416 0.70 +0.8
1,534,340 + CCNA_01416 0.70 +1.0
1,534,340 + CCNA_01416 0.70 +0.2
1,534,340 + CCNA_01416 0.70 +0.2
1,534,345 + CCNA_01416 0.70 +0.8
1,534,345 + CCNA_01416 0.70 +0.3
1,534,348 - CCNA_01416 0.70 +0.3
1,534,348 - CCNA_01416 0.70 -0.5
1,534,348 - CCNA_01416 0.70 +0.8
1,534,348 - CCNA_01416 0.70 -0.8
1,534,348 - CCNA_01416 0.70 +3.2
1,534,353 - CCNA_01416 0.71 -1.2
1,534,366 - CCNA_01416 0.72 -0.1
1,534,371 - CCNA_01416 0.73 +2.2
1,534,371 - CCNA_01416 0.73 -0.7
1,534,371 - +1.2
1,534,457 - CCNA_01416 0.83 -0.3
1,534,510 + CCNA_01416 0.89 -0.6
1,534,539 - -0.7
1,534,539 - +0.4
1,534,563 + +0.2
1,534,587 + -0.6
1,534,593 - -1.4
1,534,714 + +0.7
1,534,721 + +1.4
1,534,781 + +1.5
1,534,793 + +1.9

Or see this region's nucleotide sequence