Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01376

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,489,899	+		CCNA_01374	0.86	-0.8
1,489,899	+		CCNA_01374	0.86	-2.2
1,489,947	+		CCNA_01374	0.88	-0.8
1,489,947	+		CCNA_01374	0.88	+1.5
1,489,980	+		CCNA_01374	0.90	-0.4
1,489,985	+				-0.9
1,489,988	-				-0.3
1,489,991	+				+2.4
1,489,999	-				-0.1
1,489,999	-				-1.3
1,490,131	+				-2.1
1,490,172	+				-1.3
1,490,172	+				-0.5
1,490,172	+				+2.0
1,490,172	+				-1.8
1,490,178	+				+0.2
1,490,179	-				+0.4
1,490,179	-				-1.6
1,490,179	-				-0.5
1,490,180	-				+0.3
1,490,180	-				-1.0
1,490,180	-				+0.1
1,490,196	-				-0.8
1,490,198	+				+0.3
1,490,206	-				+0.5
1,490,228	-				+1.4
1,490,304	+		CCNA_01375	0.15	+0.1
1,490,305	+		CCNA_01375	0.15	-0.1
1,490,305	+		CCNA_01375	0.15	+0.6
1,490,305	+		CCNA_01375	0.15	+0.4
1,490,305	+		CCNA_01375	0.15	+0.4
1,490,381	-		CCNA_01375	0.33	-0.3
1,490,402	+		CCNA_01375	0.37	-0.5
1,490,407	+		CCNA_01375	0.39	+0.1
1,490,480	+		CCNA_01375	0.55	+0.5
1,490,533	-		CCNA_01375	0.67	+0.5
1,490,548	-		CCNA_01375	0.71	+1.4
1,490,559	-		CCNA_01375	0.73	+1.0
1,490,586	+		CCNA_01375	0.79	+1.0
1,490,594	-		CCNA_01375	0.81	-0.2
1,490,607	+		CCNA_01375	0.84	+2.1
1,490,607	-		CCNA_01375	0.84	+0.7
1,490,668	-				+2.6
1,490,676	-				-0.3
1,490,782	-				-0.9
1,490,782	-				+0.2
1,490,782	-				-0.7
1,490,821	-				+0.6
1,490,828	+				+1.0
1,490,836	+				+1.0
1,490,854	+				-0.5
1,490,880	+				+1.2
1,490,885	+				+0.2
1,490,888	-				+1.5
1,490,918	+				+1.7
1,490,923	+				-0.5
1,490,926	-		CCNA_01376	0.10	+0.4
1,490,944	+		CCNA_01376	0.13	+0.8
1,490,952	-		CCNA_01376	0.14	+0.2
1,490,960	-		CCNA_01376	0.15	+0.2
1,490,974	-		CCNA_01376	0.17	+1.5
1,490,976	+		CCNA_01376	0.17	+0.9
1,490,976	+		CCNA_01376	0.17	-1.6
1,490,979	-		CCNA_01376	0.18	-1.3
1,490,981	+		CCNA_01376	0.18	+0.2
1,490,984	-				+1.5
1,490,999	+		CCNA_01376	0.21	+0.9
1,490,999	+		CCNA_01376	0.21	-0.6
1,491,004	+		CCNA_01376	0.21	+0.2
1,491,022	-		CCNA_01376	0.24	+0.9
1,491,113	+		CCNA_01376	0.37	-0.1
1,491,113	+		CCNA_01376	0.37	+0.7
1,491,121	-		CCNA_01376	0.38	+0.3
1,491,169	-		CCNA_01376	0.45	-0.3
1,491,200	+		CCNA_01376	0.49	+1.5
1,491,207	+		CCNA_01376	0.50	+0.4
1,491,219	-		CCNA_01376	0.52	+0.4
1,491,287	+		CCNA_01376	0.62	-0.3
1,491,328	-		CCNA_01376	0.67	-0.2
1,491,328	-		CCNA_01376	0.67	-0.6
1,491,364	+		CCNA_01376	0.72	+0.8
1,491,374	+		CCNA_01376	0.74	-0.3
1,491,383	+		CCNA_01376	0.75	-0.2
1,491,383	+		CCNA_01376	0.75	-0.7
1,491,383	+		CCNA_01376	0.75	+1.6
1,491,383	+		CCNA_01376	0.75	+0.5
1,491,383	+		CCNA_01376	0.75	+0.5
1,491,383	+		CCNA_01376	0.75	-0.4
1,491,383	+		CCNA_01376	0.75	+1.1
1,491,384	+		CCNA_01376	0.75	+1.4
1,491,384	+		CCNA_01376	0.75	+0.7
1,491,391	-		CCNA_01376	0.76	+1.2
1,491,391	-		CCNA_01376	0.76	-0.0
1,491,391	-		CCNA_01376	0.76	+0.0
1,491,391	-		CCNA_01376	0.76	-1.1
1,491,420	+		CCNA_01376	0.80	+1.7
1,491,420	+		CCNA_01376	0.80	+3.2
1,491,428	-		CCNA_01376	0.82	+0.1
1,491,471	+		CCNA_01376	0.88	+3.3
1,491,534	+				+1.5
1,491,542	-				+1.5
1,491,556	+				+2.3
1,491,559	-				+0.0
1,491,572	-				-2.3
1,491,573	+				+1.4
1,491,573	+				+0.5
1,491,642	+				+2.3
1,491,642	+				+1.9
1,491,655	+				+1.5
1,491,670	+				+2.4
1,491,678	-				+0.8
1,491,992	-				+0.8
1,492,089	+				+0.5
1,492,191	+		CCNA_01377	0.67	+0.1
1,492,191	+		CCNA_01377	0.67	-1.3
1,492,191	+		CCNA_01377	0.67	-0.5
1,492,191	+		CCNA_01377	0.67	+0.6
1,492,199	-		CCNA_01377	0.72	-0.2
1,492,199	-		CCNA_01377	0.72	+0.8
1,492,199	-		CCNA_01377	0.72	+2.4
1,492,199	-		CCNA_01377	0.72	-1.5
1,492,199	-		CCNA_01377	0.72	+0.6
1,492,206	+		CCNA_01377	0.77	-0.4
1,492,214	-		CCNA_01377	0.82	+1.4
1,492,214	-		CCNA_01377	0.82	+0.7
1,492,247	+				+0.9
1,492,312	-				+0.7
1,492,312	-				-1.0
1,492,312	-				+1.2
1,492,352	+				+0.7
1,492,422	-				-0.2
1,492,451	+				-0.2
1,492,459	-				-1.4
1,492,465	-				+2.8
1,492,494	+				+0.4
1,492,495	+				-2.0
1,492,495	+				-0.9
1,492,495	+				-0.0
1,492,495	+				+0.7
1,492,502	-				+1.4
1,492,503	-				-0.0
1,492,503	-				+0.1
1,492,503	-				-1.1
1,492,503	-				+0.2
1,492,503	-				-1.0
1,492,503	-				+0.1
1,492,503	-				+0.8
1,492,521	-				+0.4
1,492,542	-				+2.4