Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01345

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,457,770	-		CCNA_01343	0.64	-0.1
1,457,776	+		CCNA_01343	0.65	-1.8
1,457,789	-		CCNA_01343	0.66	-0.8
1,457,850	-		CCNA_01343	0.74	+2.1
1,457,909	+		CCNA_01343	0.81	-0.3
1,457,917	-		CCNA_01343	0.82	-1.1
1,458,005	-				+1.4
1,458,029	-				+0.9
1,458,039	-				-0.6
1,458,055	+				-0.0
1,458,055	+				+1.0
1,458,064	-				+0.1
1,458,072	+				+0.9
1,458,090	+				+1.2
1,458,090	+				+1.0
1,458,090	-				+0.4
1,458,090	-				+0.9
1,458,098	-				-0.4
1,458,100	+				+1.3
1,458,176	+		CCNA_01344	0.24	-0.1
1,458,185	+		CCNA_01344	0.26	+0.9
1,458,203	+		CCNA_01344	0.29	+1.0
1,458,282	-		CCNA_01344	0.44	+0.2
1,458,282	-		CCNA_01344	0.44	-0.6
1,458,313	+		CCNA_01344	0.49	+2.0
1,458,323	+		CCNA_01344	0.51	-0.1
1,458,364	+		CCNA_01344	0.59	+0.4
1,458,364	+		CCNA_01344	0.59	-0.1
1,458,372	-		CCNA_01344	0.60	-0.6
1,458,413	+		CCNA_01344	0.68	+1.1
1,458,416	-		CCNA_01344	0.69	+1.1
1,458,421	-		CCNA_01344	0.69	-1.1
1,458,427	+		CCNA_01344	0.71	+1.3
1,458,427	+		CCNA_01344	0.71	+0.4
1,458,432	+		CCNA_01344	0.72	+1.4
1,458,440	-		CCNA_01344	0.73	+0.1
1,458,444	+		CCNA_01344	0.74	+0.2
1,458,457	+		CCNA_01344	0.76	+0.7
1,458,457	+		CCNA_01344	0.76	+2.0
1,458,468	+		CCNA_01344	0.78	-1.0
1,458,513	-		CCNA_01344	0.87	-1.5
1,458,578	+				+0.6
1,458,602	+				+1.2
1,458,638	-				-1.1
1,458,643	+				+0.3
1,458,648	-				+0.2
1,458,661	-				+0.5
1,458,661	-				-0.2
1,458,692	-				-1.3
1,458,698	-				+0.5
1,458,722	-				+0.2
1,458,815	+				+0.2
1,458,815	+				-0.1
1,458,815	+				-1.3
1,458,815	+				+1.0
1,458,815	+				+0.7
1,458,820	+				-0.6
1,458,823	-				-1.5
1,458,823	-				-0.4
1,458,832	+		CCNA_01345	0.11	+1.5
1,458,849	+		CCNA_01345	0.13	+0.5
1,458,849	+		CCNA_01345	0.13	+1.0
1,458,867	-		CCNA_01345	0.16	-1.7
1,458,943	-		CCNA_01345	0.25	+0.1
1,458,973	+		CCNA_01345	0.29	+0.9
1,458,981	-		CCNA_01345	0.30	-0.6
1,458,981	-		CCNA_01345	0.30	+0.1
1,459,052	-		CCNA_01345	0.39	-0.2
1,459,052	-		CCNA_01345	0.39	-1.6
1,459,052	-		CCNA_01345	0.39	-0.2
1,459,053	-		CCNA_01345	0.39	+1.0
1,459,100	-		CCNA_01345	0.45	-0.6
1,459,161	-		CCNA_01345	0.53	+1.4
1,459,164	+		CCNA_01345	0.54	+1.0
1,459,164	+		CCNA_01345	0.54	+0.2
1,459,164	+		CCNA_01345	0.54	+0.8
1,459,172	-		CCNA_01345	0.55	-0.0
1,459,185	-		CCNA_01345	0.56	+0.0
1,459,221	-		CCNA_01345	0.61	+1.1
1,459,251	+		CCNA_01345	0.65	-0.1
1,459,259	-		CCNA_01345	0.66	+0.9
1,459,299	-		CCNA_01345	0.71	-1.2
1,459,317	+		CCNA_01345	0.73	-1.9
1,459,336	+		CCNA_01345	0.75	+0.0
1,459,367	+		CCNA_01345	0.79	-0.9
1,459,445	-		CCNA_01345	0.89	-1.0
1,459,481	+				+2.1
1,459,486	+				+0.4
1,459,491	+				-0.9
1,459,581	+				+0.5
1,459,593	+				+0.0
1,459,593	+				+0.1
1,459,626	-				+0.7
1,459,635	-				-0.0
1,459,671	-				-0.3
1,459,683	+				+1.2
1,459,689	-				-0.7
1,459,696	-				+1.5
1,459,703	+				-0.5
1,459,753	+				+0.4
1,459,789	+		CCNA_01346	0.11	+0.2
1,459,810	+		CCNA_01346	0.14	+0.4
1,459,857	+		CCNA_01346	0.21	-2.0
1,459,857	+		CCNA_01346	0.21	+1.0
1,459,902	+		CCNA_01346	0.28	-0.2
1,459,918	+		CCNA_01346	0.30	-0.6
1,459,982	-		CCNA_01346	0.39	+1.2
1,459,996	+		CCNA_01346	0.41	+0.5
1,460,001	+		CCNA_01346	0.42	-0.6
1,460,004	-		CCNA_01346	0.43	-0.1
1,460,034	-		CCNA_01346	0.47	-0.3
1,460,068	+		CCNA_01346	0.52	-1.2
1,460,074	-		CCNA_01346	0.53	-1.3
1,460,096	+		CCNA_01346	0.56	+1.0
1,460,103	+		CCNA_01346	0.57	-1.6
1,460,104	-		CCNA_01346	0.57	-1.3
1,460,106	-		CCNA_01346	0.58	-0.6
1,460,111	-		CCNA_01346	0.58	-0.7
1,460,186	+		CCNA_01346	0.69	+1.4
1,460,186	+		CCNA_01346	0.69	-1.1
1,460,186	+		CCNA_01346	0.69	+1.4
1,460,194	-		CCNA_01346	0.70	+3.1
1,460,194	-		CCNA_01346	0.70	+1.4
1,460,194	-		CCNA_01346	0.70	+1.8
1,460,196	+		CCNA_01346	0.71	+1.0
1,460,236	-		CCNA_01346	0.77	-0.4
1,460,237	-		CCNA_01346	0.77	-0.2
1,460,275	-		CCNA_01346	0.82	+2.1
1,460,275	-		CCNA_01346	0.82	+2.7
1,460,307	+		CCNA_01346	0.87	+1.3
1,460,307	+		CCNA_01346	0.87	+2.8
1,460,310	-		CCNA_01346	0.88	-0.6
1,460,310	-		CCNA_01346	0.88	+0.3
1,460,315	-		CCNA_01346	0.88	+2.6
1,460,315	-		CCNA_01346	0.88	+1.5
1,460,348	+				+4.4
1,460,348	+				+2.7
1,460,364	+				+3.2
1,460,380	+				+4.0
1,460,441	+		CCNA_01347	0.11	+1.8
1,460,450	+		CCNA_01347	0.13	+3.1
1,460,458	-		CCNA_01347	0.14	+1.5