Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01263

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,391,375	-		CCNA_01262	0.72	-0.4
1,391,385	-		CCNA_01262	0.72	-1.0
1,391,408	+		CCNA_01262	0.73	-1.3
1,391,434	+		CCNA_01262	0.74	+2.0
1,391,442	-		CCNA_01262	0.74	+0.2
1,391,444	+		CCNA_01262	0.74	+0.4
1,391,452	-		CCNA_01262	0.74	-0.7
1,391,513	-		CCNA_01262	0.76	-1.2
1,391,564	-		CCNA_01262	0.78	+0.5
1,391,577	-		CCNA_01262	0.78	-1.5
1,391,590	+		CCNA_01262	0.79	+0.7
1,391,590	+		CCNA_01262	0.79	+1.4
1,391,590	+		CCNA_01262	0.79	+1.0
1,391,598	-		CCNA_01262	0.79	-0.6
1,391,598	-		CCNA_01262	0.79	-1.1
1,391,598	-		CCNA_01262	0.79	+2.1
1,391,598	-		CCNA_01262	0.79	-1.3
1,391,610	+		CCNA_01262	0.79	-0.0
1,391,626	+		CCNA_01262	0.80	+1.7
1,391,634	-		CCNA_01262	0.80	+0.4
1,391,670	+		CCNA_01262	0.81	+1.8
1,391,676	+		CCNA_01262	0.81	+0.6
1,391,678	-		CCNA_01262	0.81	-0.7
1,391,679	-		CCNA_01262	0.81	+0.9
1,391,725	-		CCNA_01262	0.83	-0.3
1,391,728	-		CCNA_01262	0.83	-0.8
1,391,765	-		CCNA_01262	0.84	-0.5
1,391,782	-		CCNA_01262	0.85	-0.5
1,391,793	+		CCNA_01262	0.85	+1.3
1,391,850	-		CCNA_01262	0.87	-0.8
1,391,945	+		CCNA_01262	0.90	+2.7
1,391,949	+		CCNA_01262	0.90	+1.2
1,391,958	-				-0.7
1,391,959	-				-0.4
1,391,959	-				+0.3
1,391,981	-				-1.0
1,392,062	+				+0.8
1,392,077	+				+1.6
1,392,163	-				-0.6
1,392,244	+				+2.6
1,392,257	-				+0.1
1,392,276	+				+2.3
1,392,407	+				+1.6
1,392,407	+				-0.7
1,392,440	-				-0.8
1,392,453	+				+1.1
1,392,461	-				+0.3
1,392,461	-				-0.1
1,392,470	+				-0.0
1,392,474	-				-0.7
1,392,476	-				-2.5
1,392,511	-				-0.1
1,392,606	+		CCNA_01263	0.14	+1.7
1,392,606	+		CCNA_01263	0.14	+0.2
1,392,606	+		CCNA_01263	0.14	-1.0
1,392,606	+		CCNA_01263	0.14	-0.2
1,392,609	-		CCNA_01263	0.14	-0.3
1,392,614	-		CCNA_01263	0.14	-0.2
1,392,614	-		CCNA_01263	0.14	-0.7
1,392,614	-		CCNA_01263	0.14	+0.7
1,392,614	-		CCNA_01263	0.14	-0.7
1,392,664	+		CCNA_01263	0.16	-1.5
1,392,664	+		CCNA_01263	0.16	+0.9
1,392,710	+		CCNA_01263	0.18	+0.6
1,392,729	+		CCNA_01263	0.19	-0.1
1,392,805	+		CCNA_01263	0.22	+0.9
1,392,805	+		CCNA_01263	0.22	-2.4
1,392,813	-		CCNA_01263	0.23	+1.0
1,392,960	+		CCNA_01263	0.29	-0.9
1,392,968	-		CCNA_01263	0.29	-0.5
1,392,979	+		CCNA_01263	0.30	+0.5
1,392,980	-		CCNA_01263	0.30	+0.6
1,392,987	-		CCNA_01263	0.30	-0.5
1,393,006	+		CCNA_01263	0.31	+0.1
1,393,011	+		CCNA_01263	0.31	+1.3
1,393,011	+		CCNA_01263	0.31	+0.4
1,393,013	-		CCNA_01263	0.31	+1.0
1,393,019	-		CCNA_01263	0.31	-0.4
1,393,030	-		CCNA_01263	0.32	+0.4
1,393,041	+		CCNA_01263	0.32	+0.1
1,393,048	+		CCNA_01263	0.33	-2.3
1,393,048	+		CCNA_01263	0.33	+0.4
1,393,049	-		CCNA_01263	0.33	-1.2
1,393,056	-		CCNA_01263	0.33	-2.5
1,393,110	+		CCNA_01263	0.35	+0.2
1,393,118	-		CCNA_01263	0.36	+0.4
1,393,152	-		CCNA_01263	0.37	-1.1
1,393,169	-		CCNA_01263	0.38	-0.5
1,393,231	-		CCNA_01263	0.40	+0.5
1,393,311	+		CCNA_01263	0.44	+0.6
1,393,317	-		CCNA_01263	0.44	+0.1
1,393,317	-		CCNA_01263	0.44	-0.9
1,393,349	+		CCNA_01263	0.45	+0.3
1,393,357	-		CCNA_01263	0.46	-0.8
1,393,366	+		CCNA_01263	0.46	+0.7
1,393,542	-		CCNA_01263	0.54	-0.2
1,393,630	-		CCNA_01263	0.57	+1.4
1,393,640	+		CCNA_01263	0.58	+0.5
1,393,702	+		CCNA_01263	0.60	+1.0
1,393,702	+		CCNA_01263	0.60	-0.0
1,393,710	-		CCNA_01263	0.61	-0.0
1,393,729	+		CCNA_01263	0.62	+1.7
1,393,734	+		CCNA_01263	0.62	+0.3
1,393,740	+		CCNA_01263	0.62	+1.0
1,393,776	-		CCNA_01263	0.64	+1.0
1,393,823	-		CCNA_01263	0.66	+1.5
1,393,889	+		CCNA_01263	0.68	+0.4
1,393,902	+		CCNA_01263	0.69	+0.6
1,393,902	+		CCNA_01263	0.69	-0.2
1,393,902	+		CCNA_01263	0.69	+1.3
1,393,902	+		CCNA_01263	0.69	+2.4
1,393,902	+		CCNA_01263	0.69	+1.0
1,393,905	-		CCNA_01263	0.69	+1.1
1,393,949	+		CCNA_01263	0.71	+0.2
1,393,955	+		CCNA_01263	0.71	-0.2
1,394,004	+		CCNA_01263	0.73	-0.7
1,394,060	+		CCNA_01263	0.76	+1.4
1,394,084	+		CCNA_01263	0.77	+1.3
1,394,094	+		CCNA_01263	0.77	+0.4
1,394,113	+		CCNA_01263	0.78	+1.2
1,394,131	-		CCNA_01263	0.79	+2.5
1,394,141	+		CCNA_01263	0.79	+0.8
1,394,175	-		CCNA_01263	0.80	-0.8
1,394,186	+		CCNA_01263	0.81	+0.7
1,394,277	+		CCNA_01263	0.85	+1.5
1,394,295	+		CCNA_01263	0.86	+1.4
1,394,303	-		CCNA_01263	0.86	-0.4
1,394,334	-		CCNA_01263	0.87	-0.6
1,394,354	-		CCNA_01263	0.88	-0.8
1,394,355	+		CCNA_01263	0.88	+2.2
1,394,467	-				-1.4
1,394,476	+				+0.3
1,394,476	+				+1.2
1,394,525	-				-0.4
1,394,548	-				-1.0
1,394,568	+				+1.2
1,394,568	+				-0.1
1,394,602	+				+0.5
1,394,628	+				+1.8
1,394,628	-				-0.3
1,394,650	+				+0.7
1,394,650	+				+0.6
1,394,731	+				+1.3
1,394,777	-				+1.4
1,395,624	+				-0.3
1,395,624	+				-1.4
1,395,632	-				+2.2