Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01202

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,325,352	+		CCNA_01200	0.83	+1.4
1,325,352	+		CCNA_01200	0.83	-0.3
1,325,360	-		CCNA_01200	0.83	-0.2
1,325,435	+		CCNA_01200	0.87	-0.3
1,325,469	-		CCNA_01200	0.88	+0.5
1,325,484	-		CCNA_01200	0.89	+0.2
1,325,484	-		CCNA_01200	0.89	-1.1
1,325,484	-		CCNA_01200	0.89	-0.6
1,325,496	+		CCNA_01200	0.89	-0.2
1,325,504	-		CCNA_01200	0.90	-0.7
1,325,514	-				-0.2
1,325,514	-				-0.3
1,325,514	-				-1.0
1,325,553	+				-1.0
1,325,758	-				-0.1
1,325,789	+				+1.2
1,325,797	-				+2.0
1,325,808	-				-0.2
1,325,829	+				+2.3
1,325,830	+				+1.4
1,325,864	-		CCNA_01201	0.12	-0.3
1,325,874	+		CCNA_01201	0.14	-0.7
1,325,874	+		CCNA_01201	0.14	-1.7
1,325,887	-		CCNA_01201	0.16	+0.2
1,325,925	-		CCNA_01201	0.23	+1.2
1,325,964	+		CCNA_01201	0.31	+0.3
1,325,964	+		CCNA_01201	0.31	-1.6
1,325,964	+		CCNA_01201	0.31	+0.3
1,325,964	+		CCNA_01201	0.31	+1.2
1,325,964	+		CCNA_01201	0.31	+0.2
1,325,972	-		CCNA_01201	0.32	+0.7
1,325,972	-		CCNA_01201	0.32	-0.1
1,325,972	-		CCNA_01201	0.32	+0.0
1,325,972	-		CCNA_01201	0.32	+0.8
1,325,972	-		CCNA_01201	0.32	+0.9
1,325,972	-		CCNA_01201	0.32	+1.9
1,325,972	-		CCNA_01201	0.32	+0.6
1,325,982	-		CCNA_01201	0.34	+0.9
1,326,119	+		CCNA_01201	0.60	+0.1
1,326,129	+		CCNA_01201	0.62	-0.7
1,326,185	+		CCNA_01201	0.73	+0.2
1,326,193	-		CCNA_01201	0.74	+1.8
1,326,234	+		CCNA_01201	0.82	-0.3
1,326,296	-				+2.3
1,326,387	+				-1.5
1,326,389	-				+1.3
1,326,389	-				+1.6
1,326,395	-				+2.4
1,326,395	-				+2.7
1,326,395	-				+1.9
1,326,395	-				+1.3
1,326,406	-				+1.8
1,326,523	-				+1.7
1,326,538	-				+2.1
1,326,538	-				+1.8
1,326,546	-				+0.7
1,326,582	+		CCNA_01202	0.11	-1.0
1,326,595	-		CCNA_01202	0.11	-0.0
1,326,607	-				+1.2
1,326,607	-		CCNA_01202	0.12	+2.4
1,326,610	+		CCNA_01202	0.12	+0.2
1,326,663	-		CCNA_01202	0.14	+1.3
1,326,750	+		CCNA_01202	0.18	-0.5
1,326,750	+		CCNA_01202	0.18	-0.3
1,326,750	+		CCNA_01202	0.18	-0.3
1,326,750	+		CCNA_01202	0.18	+0.9
1,326,758	-		CCNA_01202	0.18	+0.9
1,326,758	-		CCNA_01202	0.18	+1.7
1,326,758	-		CCNA_01202	0.18	-0.2
1,326,758	-		CCNA_01202	0.18	+1.4
1,326,758	-		CCNA_01202	0.18	+1.0
1,326,781	-		CCNA_01202	0.19	+0.6
1,326,788	-		CCNA_01202	0.19	-1.6
1,326,817	+		CCNA_01202	0.20	-0.5
1,326,825	-		CCNA_01202	0.21	-0.1
1,326,846	-		CCNA_01202	0.22	+1.4
1,326,848	-		CCNA_01202	0.22	+1.3
1,326,854	-		CCNA_01202	0.22	+0.5
1,326,888	-		CCNA_01202	0.23	-0.2
1,326,944	-		CCNA_01202	0.26	-0.1
1,326,993	-		CCNA_01202	0.28	+1.2
1,327,031	+		CCNA_01202	0.29	+0.6
1,327,031	-		CCNA_01202	0.29	-0.6
1,327,039	-		CCNA_01202	0.30	+4.7
1,327,039	-		CCNA_01202	0.30	+1.5
1,327,039	-		CCNA_01202	0.30	-0.5
1,327,087	-		CCNA_01202	0.32	-0.4
1,327,096	-		CCNA_01202	0.32	+2.2
1,327,104	-		CCNA_01202	0.32	+0.6
1,327,124	+		CCNA_01202	0.33	-0.7
1,327,132	-		CCNA_01202	0.33	+1.1
1,327,170	+		CCNA_01202	0.35	-2.2
1,327,178	-		CCNA_01202	0.35	+0.1
1,327,236	-		CCNA_01202	0.38	+2.2
1,327,265	-		CCNA_01202	0.39	+0.9
1,327,281	+		CCNA_01202	0.40	-0.8
1,327,281	+		CCNA_01202	0.40	+0.4
1,327,289	-		CCNA_01202	0.40	-1.1
1,327,363	+		CCNA_01202	0.43	-0.8
1,327,399	-		CCNA_01202	0.44	+0.5
1,327,404	-		CCNA_01202	0.45	+3.0
1,327,404	-		CCNA_01202	0.45	+2.2
1,327,441	+		CCNA_01202	0.46	-0.2
1,327,444	+		CCNA_01202	0.46	+1.1
1,327,446	+		CCNA_01202	0.46	-1.1
1,327,446	+		CCNA_01202	0.46	+0.2
1,327,446	+		CCNA_01202	0.46	-0.9
1,327,446	+		CCNA_01202	0.46	-0.4
1,327,446	+		CCNA_01202	0.46	-1.5
1,327,446	+		CCNA_01202	0.46	-0.3
1,327,446	+		CCNA_01202	0.46	-2.4
1,327,446	+		CCNA_01202	0.46	-0.8
1,327,446	+		CCNA_01202	0.46	-0.1
1,327,446	+		CCNA_01202	0.46	+2.3
1,327,446	+		CCNA_01202	0.46	-1.5
1,327,446	+		CCNA_01202	0.46	-0.1
1,327,446	+		CCNA_01202	0.46	-0.7
1,327,449	-		CCNA_01202	0.46	+0.3
1,327,451	+		CCNA_01202	0.47	-1.0
1,327,451	+		CCNA_01202	0.47	+0.2
1,327,454	-		CCNA_01202	0.47	+1.7
1,327,454	-		CCNA_01202	0.47	-0.4
1,327,454	-		CCNA_01202	0.47	+2.0
1,327,454	-		CCNA_01202	0.47	+2.4
1,327,454	-		CCNA_01202	0.47	+0.8
1,327,454	-		CCNA_01202	0.47	+0.8
1,327,459	-		CCNA_01202	0.47	+1.1
1,327,459	-		CCNA_01202	0.47	-0.5
1,327,521	+		CCNA_01202	0.49	+0.7
1,327,554	+		CCNA_01202	0.51	+0.9
1,327,562	-		CCNA_01202	0.51	+0.5
1,327,563	-		CCNA_01202	0.51	+0.6
1,327,563	-		CCNA_01202	0.51	-1.2
1,327,568	-		CCNA_01202	0.51	+0.6
1,327,581	+		CCNA_01202	0.52	+0.9
1,327,589	-		CCNA_01202	0.52	+0.2
1,327,596	-		CCNA_01202	0.53	+0.6
1,327,660	+		CCNA_01202	0.55	+0.2
1,327,668	-		CCNA_01202	0.55	+0.9
1,327,679	+		CCNA_01202	0.56	+1.5
1,327,679	-		CCNA_01202	0.56	+2.0
1,327,694	-		CCNA_01202	0.57	+0.1
1,327,702	+		CCNA_01202	0.57	+0.0
1,327,746	-		CCNA_01202	0.59	-0.7
1,327,787	-		CCNA_01202	0.60	-0.1
1,327,794	+		CCNA_01202	0.61	-0.1
1,327,794	+		CCNA_01202	0.61	+0.6
1,327,794	+		CCNA_01202	0.61	-0.5
1,327,800	+		CCNA_01202	0.61	+1.3
1,327,800	+		CCNA_01202	0.61	-1.3
1,327,802	-		CCNA_01202	0.61	+1.7
1,327,802	-		CCNA_01202	0.61	+1.3
1,327,802	-		CCNA_01202	0.61	+2.1
1,327,808	-		CCNA_01202	0.61	+1.5
1,327,859	-		CCNA_01202	0.63	+0.3
1,327,871	-		CCNA_01202	0.64	+2.6
1,327,876	-		CCNA_01202	0.64	-0.8
1,327,896	+		CCNA_01202	0.65	-0.3
1,327,898	+		CCNA_01202	0.65	-1.3
1,327,930	+		CCNA_01202	0.66	+1.3
1,327,937	-		CCNA_01202	0.67	+0.7
1,327,952	+		CCNA_01202	0.67	-0.1
1,327,961	+		CCNA_01202	0.68	+3.3
1,327,961	+		CCNA_01202	0.68	+0.6
1,327,979	-		CCNA_01202	0.68	+2.7
1,328,016	-		CCNA_01202	0.70	+0.6
1,328,027	-		CCNA_01202	0.70	+1.2
1,328,069	+		CCNA_01202	0.72	-2.0
1,328,069	+		CCNA_01202	0.72	-0.4
1,328,069	+		CCNA_01202	0.72	-1.5
1,328,122	+		CCNA_01202	0.74	-0.2
1,328,131	-		CCNA_01202	0.75	+1.7
1,328,131	-		CCNA_01202	0.75	+2.0
1,328,156	-		CCNA_01202	0.76	+1.9
1,328,189	-		CCNA_01202	0.77	+1.4
1,328,217	+		CCNA_01202	0.78	-0.3
1,328,217	+		CCNA_01202	0.78	+0.2
1,328,222	+		CCNA_01202	0.78	+0.2
1,328,235	-		CCNA_01202	0.79	+1.0
1,328,236	+		CCNA_01202	0.79	-0.8
1,328,240	-		CCNA_01202	0.79	+2.8
1,328,252	-		CCNA_01202	0.80	+0.4
1,328,327	-		CCNA_01202	0.83	-0.6
1,328,347	+		CCNA_01202	0.83	+0.9
1,328,347	+		CCNA_01202	0.83	+1.2
1,328,355	-		CCNA_01202	0.84	+1.5
1,328,355	-		CCNA_01202	0.84	+0.3
1,328,355	-		CCNA_01202	0.84	+1.3
1,328,355	-		CCNA_01202	0.84	+0.8
1,328,355	-		CCNA_01202	0.84	+2.5
1,328,436	-		CCNA_01202	0.87	-0.5
1,328,436	-		CCNA_01202	0.87	+1.1
1,328,436	-		CCNA_01202	0.87	+0.6
1,328,441	-		CCNA_01202	0.87	-0.5
1,328,492	+		CCNA_01202	0.89	-0.6
1,328,493	+		CCNA_01202	0.90	+0.4
1,328,512	+				-1.4
1,328,598	+				-0.8
1,328,611	-				-0.6
1,328,628	-				-0.2
1,328,651	-				+1.7
1,328,653	+				+1.5
1,328,679	+				+0.7
1,328,687	-				+1.3
1,328,706	-				+0.4
1,328,715	+				-0.8
1,328,719	+				-1.4
1,328,738	-				+0.6
1,328,749	-				+0.6
1,328,749	-				-0.3
1,328,752	+				+0.8
1,328,757	+				-0.6
1,328,757	+				+1.7
1,328,758	-				-0.8
1,328,765	-				+0.1
1,328,765	-				-1.0
1,328,765	-				+3.6
1,328,792	-				+0.7
1,328,870	+				+0.2
1,328,870	+				-1.0
1,328,878	-				-0.9
1,328,917	+				+1.6
1,328,926	+				-1.3
1,328,975	+				+1.0
1,328,975	+				+0.0
1,329,027	+				+0.2
1,329,037	+		CCNA_01203	0.10	+3.8
1,329,037	+		CCNA_01203	0.10	+3.4
1,329,046	+		CCNA_01203	0.11	-1.1
1,329,079	+		CCNA_01203	0.12	+0.0
1,329,087	-		CCNA_01203	0.13	+0.3
1,329,101	+		CCNA_01203	0.13	+2.0
1,329,114	-		CCNA_01203	0.14	+0.8
1,329,119	+		CCNA_01203	0.14	-0.6
1,329,169	-		CCNA_01203	0.17	-0.7
1,329,188	-		CCNA_01203	0.18	-0.8
1,329,208	-		CCNA_01203	0.19	-1.8
1,329,213	+		CCNA_01203	0.19	+0.1
1,329,229	+		CCNA_01203	0.20	-0.5
1,329,316	-		CCNA_01203	0.24	-0.3
1,329,356	+		CCNA_01203	0.26	-1.2
1,329,403	+		CCNA_01203	0.29	-1.5
1,329,403	+		CCNA_01203	0.29	+0.7
1,329,403	+		CCNA_01203	0.29	+0.2
1,329,411	-		CCNA_01203	0.29	+0.0
1,329,468	+		CCNA_01203	0.32	-0.8
1,329,481	-		CCNA_01203	0.33	+0.9
1,329,507	-		CCNA_01203	0.34	+0.3
1,329,537	+		CCNA_01203	0.35	+0.9
1,329,537	+		CCNA_01203	0.35	+0.1
1,329,537	-		CCNA_01203	0.35	+1.2
1,329,549	+		CCNA_01203	0.36	-1.0
1,329,557	-		CCNA_01203	0.36	+1.1
1,329,557	-		CCNA_01203	0.36	+0.7
1,329,567	-		CCNA_01203	0.37	-1.3
1,329,585	+		CCNA_01203	0.38	+1.3
1,329,593	-		CCNA_01203	0.38	-0.8
1,329,595	+		CCNA_01203	0.38	-0.2
1,329,627	+		CCNA_01203	0.40	+4.9
1,329,660	-		CCNA_01203	0.42	-0.8
1,329,696	+		CCNA_01203	0.43	-1.1
1,329,704	-		CCNA_01203	0.44	+1.2
1,329,718	+		CCNA_01203	0.45	+0.5
1,329,718	+		CCNA_01203	0.45	+1.3
1,329,727	-		CCNA_01203	0.45	-1.1
1,329,739	+		CCNA_01203	0.46	-0.9
1,329,741	+		CCNA_01203	0.46	-1.3