Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01184

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,302,656	-				+1.5
1,302,676	+				+1.2
1,302,676	+				+2.0
1,302,684	-				+1.1
1,302,684	-				-0.2
1,302,684	-				+1.1
1,302,684	-				-0.8
1,302,686	-				-0.9
1,302,687	+				+1.2
1,302,704	-				-0.2
1,302,740	-		CCNA_01183	0.13	+1.0
1,302,759	+		CCNA_01183	0.15	+2.7
1,302,815	+		CCNA_01183	0.20	-0.4
1,302,816	+		CCNA_01183	0.21	+0.7
1,302,839	+		CCNA_01183	0.23	-1.5
1,302,839	+		CCNA_01183	0.23	+2.6
1,302,872	+		CCNA_01183	0.26	+1.4
1,302,907	-		CCNA_01183	0.29	+1.3
1,302,935	+		CCNA_01183	0.32	+1.3
1,302,935	+		CCNA_01183	0.32	+0.3
1,302,935	+		CCNA_01183	0.32	-0.8
1,302,935	+		CCNA_01183	0.32	+1.3
1,302,935	+		CCNA_01183	0.32	+0.1
1,302,937	+		CCNA_01183	0.32	+0.1
1,302,937	+		CCNA_01183	0.32	+1.2
1,302,937	+		CCNA_01183	0.32	+2.4
1,302,939	+		CCNA_01183	0.32	-0.5
1,302,943	-		CCNA_01183	0.33	-0.1
1,302,945	-		CCNA_01183	0.33	+0.7
1,302,945	-		CCNA_01183	0.33	+0.8
1,302,972	+		CCNA_01183	0.36	+2.4
1,302,980	-		CCNA_01183	0.36	-0.1
1,302,980	-		CCNA_01183	0.36	-2.1
1,302,980	-		CCNA_01183	0.36	-0.5
1,303,014	+		CCNA_01183	0.40	-0.0
1,303,025	+		CCNA_01183	0.41	+0.1
1,303,063	+		CCNA_01183	0.45	+1.3
1,303,083	+		CCNA_01183	0.46	+1.5
1,303,099	+		CCNA_01183	0.48	+0.1
1,303,107	-		CCNA_01183	0.49	-1.6
1,303,107	-		CCNA_01183	0.49	+0.5
1,303,107	-		CCNA_01183	0.49	+0.0
1,303,110	+		CCNA_01183	0.49	+0.6
1,303,117	-		CCNA_01183	0.50	+1.5
1,303,127	-		CCNA_01183	0.51	-1.9
1,303,127	-		CCNA_01183	0.51	-0.6
1,303,138	+		CCNA_01183	0.52	-0.2
1,303,189	+		CCNA_01183	0.57	-1.9
1,303,204	+		CCNA_01183	0.58	+1.2
1,303,207	-		CCNA_01183	0.59	+0.1
1,303,237	+		CCNA_01183	0.61	+0.9
1,303,237	+		CCNA_01183	0.61	+2.2
1,303,270	+		CCNA_01183	0.65	+2.3
1,303,278	-		CCNA_01183	0.65	+2.0
1,303,278	-		CCNA_01183	0.65	-0.4
1,303,278	-		CCNA_01183	0.65	+1.5
1,303,280	+		CCNA_01183	0.66	+1.5
1,303,280	+		CCNA_01183	0.66	+2.4
1,303,332	+		CCNA_01183	0.71	+1.7
1,303,347	-		CCNA_01183	0.72	+0.2
1,303,355	+		CCNA_01183	0.73	+1.4
1,303,355	+		CCNA_01183	0.73	+2.1
1,303,355	+				+2.7
1,303,370	+		CCNA_01183	0.74	+3.2
1,303,464	+		CCNA_01183	0.83	+1.7
1,303,464	-				+2.3
1,303,469	+		CCNA_01183	0.84	+1.9
1,303,469	+		CCNA_01183	0.84	+2.1
1,303,472	-		CCNA_01183	0.84	+1.6
1,303,482	-		CCNA_01183	0.85	+0.8
1,303,567	+				+2.5
1,303,580	+				+2.4
1,303,663	+				+2.5
1,303,681	-				-0.6
1,303,707	+		CCNA_01184	0.15	+2.6
1,303,707	+		CCNA_01184	0.15	+2.8
1,303,707	+		CCNA_01184	0.15	+2.5
1,303,707	+				+5.6
1,303,707	+		CCNA_01184	0.15	+2.9
1,303,707	+		CCNA_01184	0.15	+2.0
1,303,715	-		CCNA_01184	0.17	+0.8
1,303,717	+		CCNA_01184	0.17	+2.5
1,303,722	+		CCNA_01184	0.18	+0.6
1,303,725	-		CCNA_01184	0.19	-1.6
1,303,731	+		CCNA_01184	0.20	+2.0
1,303,732	+		CCNA_01184	0.20	+1.1
1,303,754	+		CCNA_01184	0.25	+0.8
1,303,759	-				+3.7
1,303,767	-		CCNA_01184	0.28	-0.7
1,303,768	+		CCNA_01184	0.28	+2.1
1,303,776	-		CCNA_01184	0.30	+0.0
1,303,882	-		CCNA_01184	0.54	+2.0
1,303,885	+		CCNA_01184	0.55	+1.5
1,303,896	+		CCNA_01184	0.57	+1.6
1,303,954	+		CCNA_01184	0.70	+0.4
1,303,960	-		CCNA_01184	0.71	+0.0
1,303,962	-		CCNA_01184	0.72	-0.4
1,303,973	+		CCNA_01184	0.74	+1.7
1,303,973	+		CCNA_01184	0.74	+2.6
1,303,981	-				+1.5
1,303,988	-		CCNA_01184	0.78	-0.7
1,304,000	+		CCNA_01184	0.80	+1.3
1,304,000	+		CCNA_01184	0.80	+0.7
1,304,005	+		CCNA_01184	0.81	+2.4
1,304,005	+		CCNA_01184	0.81	+0.8
1,304,008	-		CCNA_01184	0.82	-0.9
1,304,013	-		CCNA_01184	0.83	+0.8
1,304,013	-		CCNA_01184	0.83	-0.8
1,304,013	-		CCNA_01184	0.83	-1.1
1,304,026	+		CCNA_01184	0.86	+1.5
1,304,036	+		CCNA_01184	0.88	+2.8
1,304,036	+		CCNA_01184	0.88	-0.6
1,304,046	+				-0.0
1,304,059	-				-1.2
1,304,080	-				+0.2
1,304,082	+				+1.1
1,304,136	+		CCNA_01185	0.12	+0.9
1,304,145	-		CCNA_01185	0.15	-0.9
1,304,148	+		CCNA_01185	0.16	-0.5
1,304,171	+		CCNA_01185	0.22	+1.7
1,304,171	+		CCNA_01185	0.22	+1.4
1,304,202	-		CCNA_01185	0.31	+0.6
1,304,212	-		CCNA_01185	0.34	-0.6
1,304,229	+		CCNA_01185	0.39	-1.4
1,304,229	+		CCNA_01185	0.39	+2.7
1,304,237	-		CCNA_01185	0.41	+0.0
1,304,237	-		CCNA_01185	0.41	-1.8
1,304,237	-		CCNA_01185	0.41	-1.1
1,304,280	-		CCNA_01185	0.53	-2.2
1,304,296	+		CCNA_01185	0.58	+1.1
1,304,319	+		CCNA_01185	0.64	+1.1
1,304,319	+		CCNA_01185	0.64	+0.6
1,304,327	-		CCNA_01185	0.67	-0.3
1,304,399	+		CCNA_01185	0.87	-0.7
1,304,399	+		CCNA_01185	0.87	-0.8
1,304,404	+		CCNA_01185	0.89	+0.8
1,304,407	-		CCNA_01185	0.89	+0.3
1,304,444	+				+3.1
1,304,452	-				+1.0
1,304,492	-				-0.0
1,304,585	+				-0.7
1,304,653	+				+1.0
1,304,653	+				+0.6
1,304,684	+				+2.1
1,304,693	+				+1.9
1,304,721	+				+2.1
1,304,842	+		CCNA_01186	0.44	+3.3
1,304,842	+		CCNA_01186	0.44	+3.8
1,304,842	+		CCNA_01186	0.44	+3.8
1,304,842	+		CCNA_01186	0.44	+3.4
1,304,850	-		CCNA_01186	0.46	+1.0
1,304,850	-		CCNA_01186	0.46	+0.3
1,304,854	+		CCNA_01186	0.48	+3.8
1,304,884	-		CCNA_01186	0.57	-1.0
1,304,886	+		CCNA_01186	0.58	+3.3
1,304,912	-		CCNA_01186	0.66	+3.8
1,305,052	+				+2.1
1,305,057	+				+2.5
1,305,070	+				+0.4