Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01161

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,267,522	+		CCNA_01159	0.42	-1.1
1,267,553	+		CCNA_01159	0.44	+0.6
1,267,559	+		CCNA_01159	0.44	+0.4
1,267,561	-		CCNA_01159	0.44	-1.0
1,267,565	+		CCNA_01159	0.45	+2.0
1,267,565	+		CCNA_01159	0.45	-1.2
1,267,565	+		CCNA_01159	0.45	+0.3
1,267,565	+		CCNA_01159	0.45	-0.1
1,267,565	+		CCNA_01159	0.45	+0.8
1,267,565	+		CCNA_01159	0.45	-1.3
1,267,565	+		CCNA_01159	0.45	+0.2
1,267,573	-		CCNA_01159	0.45	-0.3
1,267,655	+		CCNA_01159	0.51	+1.5
1,267,720	-		CCNA_01159	0.56	-1.8
1,267,748	+		CCNA_01159	0.58	+1.1
1,267,748	+		CCNA_01159	0.58	+0.8
1,267,756	-		CCNA_01159	0.59	-1.3
1,267,766	-		CCNA_01159	0.60	+0.8
1,267,776	-		CCNA_01159	0.60	+1.3
1,267,797	+		CCNA_01159	0.62	+2.0
1,267,797	+		CCNA_01159	0.62	-1.5
1,267,808	+		CCNA_01159	0.63	+1.3
1,267,816	+		CCNA_01159	0.63	+0.5
1,267,824	-		CCNA_01159	0.64	-1.3
1,267,854	+		CCNA_01159	0.66	-1.0
1,267,854	+		CCNA_01159	0.66	-0.3
1,267,857	-		CCNA_01159	0.66	+1.0
1,267,862	+		CCNA_01159	0.67	-2.4
1,267,869	+		CCNA_01159	0.67	+1.0
1,267,874	+		CCNA_01159	0.68	+0.3
1,267,877	-		CCNA_01159	0.68	-0.3
1,267,910	+		CCNA_01159	0.70	-1.6
1,267,916	+		CCNA_01159	0.71	-1.3
1,267,916	+		CCNA_01159	0.71	+1.3
1,267,922	-		CCNA_01159	0.71	-0.3
1,267,922	-		CCNA_01159	0.71	+0.1
1,267,927	+		CCNA_01159	0.71	+1.0
1,267,929	-		CCNA_01159	0.72	+1.0
1,267,934	+		CCNA_01159	0.72	-1.4
1,267,954	+		CCNA_01159	0.73	+0.8
1,267,959	+		CCNA_01159	0.74	-2.1
1,267,967	+		CCNA_01159	0.74	+1.1
1,267,967	-		CCNA_01159	0.74	-0.2
1,267,991	-		CCNA_01159	0.76	-0.3
1,268,000	+		CCNA_01159	0.77	-0.0
1,268,003	-		CCNA_01159	0.77	-0.9
1,268,005	+		CCNA_01159	0.77	+1.5
1,268,010	+		CCNA_01159	0.78	+0.3
1,268,013	-		CCNA_01159	0.78	-0.3
1,268,018	-		CCNA_01159	0.78	-0.8
1,268,026	+		CCNA_01159	0.79	-1.9
1,268,034	-		CCNA_01159	0.79	+1.1
1,268,083	-		CCNA_01159	0.83	-0.4
1,268,119	+		CCNA_01159	0.86	+0.9
1,268,122	-		CCNA_01159	0.86	+0.7
1,268,124	+		CCNA_01159	0.86	+0.1
1,268,135	-		CCNA_01159	0.87	+1.1
1,268,158	+		CCNA_01159	0.88	+0.3
1,268,184	-				+0.8
1,268,200	+				+0.6
1,268,200	+				+1.0
1,268,200	+				+0.6
1,268,218	-				-0.2
1,268,231	-				+1.0
1,268,236	-				+0.2
1,268,239	+				+0.0
1,268,239	+				+0.9
1,268,301	-				+0.3
1,268,310	+				+0.0
1,268,322	-				+0.6
1,268,325	+				-0.1
1,268,333	-				+1.1
1,268,350	-				+1.3
1,268,383	+				-0.3
1,268,391	-				-1.3
1,268,393	+				-1.9
1,268,402	-				+1.0
1,268,484	-				-2.7
1,268,516	+				-1.3
1,268,534	+				+0.3
1,268,534	+				-0.8
1,268,534	+				-1.0
1,268,581	-				-0.7
1,268,603	-				+0.4
1,268,603	-				-0.0
1,268,624	+				-1.3
1,268,639	+				+0.3
1,268,660	+		CCNA_01161	0.10	-0.4
1,268,697	-		CCNA_01161	0.13	-0.2
1,268,742	-		CCNA_01161	0.16	-1.5
1,268,804	+		CCNA_01161	0.21	-0.7
1,268,804	+		CCNA_01161	0.21	+0.0
1,268,804	+		CCNA_01161	0.21	+3.3
1,268,809	+		CCNA_01161	0.21	-1.0
1,268,809	+		CCNA_01161	0.21	+0.9
1,268,810	-		CCNA_01161	0.22	-0.0
1,268,832	-		CCNA_01161	0.23	-2.1
1,268,850	+		CCNA_01161	0.24	-0.2
1,268,869	+		CCNA_01161	0.26	+1.7
1,268,890	-		CCNA_01161	0.27	+2.7
1,268,903	+		CCNA_01161	0.28	-1.0
1,268,968	+		CCNA_01161	0.33	-0.1
1,268,968	+		CCNA_01161	0.33	-1.1
1,269,036	+		CCNA_01161	0.38	+0.7
1,269,037	-		CCNA_01161	0.38	+1.7
1,269,088	-		CCNA_01161	0.42	-0.5
1,269,096	-		CCNA_01161	0.43	+2.0
1,269,099	+		CCNA_01161	0.43	-2.1
1,269,116	+		CCNA_01161	0.44	+0.3
1,269,116	-		CCNA_01161	0.44	-1.5
1,269,129	+		CCNA_01161	0.45	-1.0
1,269,129	+		CCNA_01161	0.45	-1.4
1,269,129	+		CCNA_01161	0.45	+0.2
1,269,129	+		CCNA_01161	0.45	-0.9
1,269,129	+		CCNA_01161	0.45	+0.1
1,269,129	+		CCNA_01161	0.45	-0.4
1,269,137	-		CCNA_01161	0.46	-1.0
1,269,137	-		CCNA_01161	0.46	-1.5
1,269,150	+		CCNA_01161	0.47	-0.6
1,269,150	+		CCNA_01161	0.47	-0.9
1,269,150	+		CCNA_01161	0.47	+0.1
1,269,150	+		CCNA_01161	0.47	+0.7
1,269,231	+		CCNA_01161	0.53	+2.9
1,269,231	+		CCNA_01161	0.53	+3.2
1,269,231	+		CCNA_01161	0.53	+3.1
1,269,231	+		CCNA_01161	0.53	+3.3
1,269,301	+		CCNA_01161	0.58	+2.0
1,269,309	-		CCNA_01161	0.59	-2.9
1,269,376	+		CCNA_01161	0.64	-0.1
1,269,376	+		CCNA_01161	0.64	+0.0
1,269,452	+		CCNA_01161	0.69	-0.1
1,269,497	+		CCNA_01161	0.73	+1.1
1,269,548	+		CCNA_01161	0.76	-2.0
1,269,561	+		CCNA_01161	0.77	+0.8
1,269,561	+		CCNA_01161	0.77	-1.3
1,269,561	+		CCNA_01161	0.77	-0.1
1,269,561	+		CCNA_01161	0.77	-0.5
1,269,569	-		CCNA_01161	0.78	-0.7
1,269,574	-		CCNA_01161	0.78	+1.3
1,269,574	-		CCNA_01161	0.78	+2.0
1,269,576	+		CCNA_01161	0.78	-0.9
1,269,579	-		CCNA_01161	0.79	+1.1
1,269,619	-		CCNA_01161	0.82	+0.3
1,269,645	-		CCNA_01161	0.84	+1.4
1,269,650	-		CCNA_01161	0.84	+0.8
1,269,661	-		CCNA_01161	0.85	+0.0
1,269,670	+		CCNA_01161	0.85	+1.5
1,269,670	+		CCNA_01161	0.85	+1.4
1,269,749	-				+2.7
1,269,749	-				-1.6
1,269,756	+				+1.5
1,269,767	+				-1.7
1,269,771	-				+1.0
1,269,799	+				-0.7
1,269,813	+				+1.8
1,269,821	-				+0.3
1,269,821	-				-0.0
1,269,821	-				+2.0
1,269,866	-				+0.5
1,269,882	+				+0.1
1,269,884	+				+0.6
1,270,034	+				+3.6
1,270,059	-				+0.6
1,270,071	-				-0.1
1,270,074	+				-0.8
1,270,079	+				-0.3
1,270,090	-				-0.3
1,270,096	+				-1.0
1,270,104	-				+0.7
1,270,109	-				-0.4
1,270,153	+				-1.8
1,270,182	+		CCNA_01162	0.11	-0.8
1,270,189	-		CCNA_01162	0.11	-0.0
1,270,189	-		CCNA_01162	0.11	-0.4
1,270,201	+		CCNA_01162	0.11	-1.9
1,270,209	-		CCNA_01162	0.12	-1.2
1,270,209	-		CCNA_01162	0.12	+0.1
1,270,209	-		CCNA_01162	0.12	-0.1
1,270,209	-		CCNA_01162	0.12	-0.4
1,270,276	+		CCNA_01162	0.15	-0.7
1,270,299	-		CCNA_01162	0.16	-1.2
1,270,314	-		CCNA_01162	0.16	-2.4
1,270,350	+		CCNA_01162	0.18	+1.5
1,270,360	+		CCNA_01162	0.18	+0.9
1,270,392	-		CCNA_01162	0.20	+0.1
1,270,418	+		CCNA_01162	0.21	-0.3
1,270,436	+		CCNA_01162	0.22	-0.3
1,270,445	-		CCNA_01162	0.22	-1.3
1,270,450	-		CCNA_01162	0.22	-0.9
1,270,470	-		CCNA_01162	0.23	-0.1
1,270,527	-		CCNA_01162	0.26	-1.9
1,270,560	+		CCNA_01162	0.27	-0.8
1,270,560	+		CCNA_01162	0.27	+0.1
1,270,560	+		CCNA_01162	0.27	-1.5
1,270,568	-		CCNA_01162	0.27	+0.2
1,270,568	-		CCNA_01162	0.27	+0.2
1,270,569	+		CCNA_01162	0.27	-0.7
1,270,576	+		CCNA_01162	0.28	+1.2
1,270,576	+		CCNA_01162	0.28	+2.1
1,270,584	-		CCNA_01162	0.28	+2.3
1,270,615	-		CCNA_01162	0.29	+1.5
1,270,615	-		CCNA_01162	0.29	+1.1
1,270,615	-		CCNA_01162	0.29	-0.9
1,270,634	+		CCNA_01162	0.30	+0.4
1,270,651	+		CCNA_01162	0.31	-0.6
1,270,659	+		CCNA_01162	0.31	-1.2
1,270,684	+				+2.7
1,270,696	+		CCNA_01162	0.33	+1.3
1,270,757	+		CCNA_01162	0.36	+0.2
1,270,817	+		CCNA_01162	0.38	-1.8
1,270,824	+		CCNA_01162	0.38	+1.4
1,270,849	+		CCNA_01162	0.40	+0.4
1,270,849	+		CCNA_01162	0.40	-0.4