Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01157

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,261,957	+				-0.8
1,261,969	+		CCNA_01156	0.11	+1.5
1,261,972	+		CCNA_01156	0.11	+0.2
1,261,980	-		CCNA_01156	0.12	-0.3
1,262,003	-		CCNA_01156	0.15	-0.2
1,262,034	+		CCNA_01156	0.19	+0.6
1,262,037	-		CCNA_01156	0.19	+2.7
1,262,039	+		CCNA_01156	0.19	-0.1
1,262,058	+		CCNA_01156	0.22	+0.5
1,262,088	+		CCNA_01156	0.26	+1.1
1,262,102	-		CCNA_01156	0.27	-0.8
1,262,148	-		CCNA_01156	0.33	-0.4
1,262,150	-		CCNA_01156	0.34	-1.0
1,262,159	-		CCNA_01156	0.35	+1.8
1,262,164	-				+2.3
1,262,174	+		CCNA_01156	0.37	+0.1
1,262,192	-		CCNA_01156	0.39	-1.0
1,262,194	-		CCNA_01156	0.39	-0.6
1,262,201	+		CCNA_01156	0.40	-1.5
1,262,209	-		CCNA_01156	0.41	+0.8
1,262,221	-		CCNA_01156	0.43	-0.4
1,262,224	+		CCNA_01156	0.43	+0.2
1,262,248	+		CCNA_01156	0.46	+1.3
1,262,259	+		CCNA_01156	0.47	+0.6
1,262,307	-		CCNA_01156	0.54	+0.6
1,262,379	+		CCNA_01156	0.63	+0.9
1,262,396	+		CCNA_01156	0.65	+0.5
1,262,396	+		CCNA_01156	0.65	+0.9
1,262,396	+		CCNA_01156	0.65	-0.2
1,262,419	-		CCNA_01156	0.68	+1.5
1,262,435	+		CCNA_01156	0.70	-1.1
1,262,437	+		CCNA_01156	0.70	-0.5
1,262,484	+		CCNA_01156	0.76	+0.4
1,262,521	+		CCNA_01156	0.81	+0.3
1,262,529	-		CCNA_01156	0.82	-1.2
1,262,566	-		CCNA_01156	0.87	+0.8
1,262,569	+		CCNA_01156	0.87	+1.1
1,262,577	-		CCNA_01156	0.88	+2.5
1,262,590	+		CCNA_01156	0.90	+1.1
1,262,610	+				+1.3
1,262,610	+				+1.1
1,262,610	+				+1.8
1,262,610	+				+2.3
1,262,610	+				+1.5
1,262,618	-				+0.7
1,262,643	+				-0.0
1,262,662	-				+1.1
1,262,680	-				+2.0
1,262,685	+				+0.9
1,262,688	+				+0.0
1,262,716	-				+1.6
1,262,736	+				+0.6
1,262,736	+				-0.4
1,262,792	+				-1.2
1,262,804	+				+1.1
1,262,804	+				-0.0
1,262,804	+				+1.0
1,262,804	+				-0.0
1,262,804	+				+3.3
1,262,804	+				+2.0
1,262,804	+				+0.8
1,262,804	+				+0.4
1,262,804	+				+0.4
1,262,804	+				+0.8
1,262,804	+				-0.4
1,262,804	+				+1.0
1,262,812	-				+1.5
1,262,812	-				+2.3
1,262,812	-				-0.6
1,262,812	-				+1.1
1,262,812	-				-0.8
1,262,812	-				+1.1
1,262,812	-				+2.0
1,262,812	-				-0.5
1,262,812	-				-0.4
1,262,812	-				-0.6
1,262,821	+				-0.3
1,262,831	-				+1.7
1,262,839	+				+2.7
1,262,847	-				+1.0
1,262,884	+				+2.8
1,262,896	-				-0.5
1,262,902	+				+1.4
1,262,902	+				-1.6
1,262,914	+				+1.2
1,262,914	+				-0.7
1,262,915	+				+1.2
1,262,921	-				-1.0
1,262,923	-				-0.1
1,262,925	+				+1.1
1,262,925	+				+0.7
1,262,925	+				+1.8
1,262,933	-				-0.5
1,262,950	-				+0.3
1,262,962	+				+1.6
1,262,993	-				-0.9
1,263,007	+		CCNA_01157	0.10	-0.8
1,263,007	+		CCNA_01157	0.10	+1.4
1,263,008	-		CCNA_01157	0.10	+0.6
1,263,011	-		CCNA_01157	0.10	-0.1
1,263,015	-		CCNA_01157	0.11	+0.9
1,263,015	-		CCNA_01157	0.11	-1.7
1,263,057	-		CCNA_01157	0.13	-0.6
1,263,138	+		CCNA_01157	0.19	+0.9
1,263,146	-		CCNA_01157	0.19	-0.1
1,263,146	-		CCNA_01157	0.19	+1.5
1,263,146	-		CCNA_01157	0.19	+0.4
1,263,151	+		CCNA_01157	0.20	+0.6
1,263,154	-		CCNA_01157	0.20	+1.0
1,263,159	-		CCNA_01157	0.20	-0.2
1,263,161	-		CCNA_01157	0.20	-0.1
1,263,163	+		CCNA_01157	0.20	-1.1
1,263,169	-		CCNA_01157	0.21	-0.2
1,263,204	+		CCNA_01157	0.23	+1.5
1,263,224	+		CCNA_01157	0.24	-0.1
1,263,230	+		CCNA_01157	0.25	-1.3
1,263,230	+		CCNA_01157	0.25	+2.8
1,263,230	+		CCNA_01157	0.25	-0.2
1,263,238	-		CCNA_01157	0.25	-1.1
1,263,263	+		CCNA_01157	0.27	-0.1
1,263,315	+		CCNA_01157	0.31	+0.3
1,263,315	+		CCNA_01157	0.31	+0.2
1,263,328	-		CCNA_01157	0.31	-1.1
1,263,330	+		CCNA_01157	0.32	-0.7
1,263,330	+		CCNA_01157	0.32	+0.8
1,263,337	+		CCNA_01157	0.32	+0.1
1,263,338	-		CCNA_01157	0.32	+0.5
1,263,338	-		CCNA_01157	0.32	+1.7
1,263,338	-		CCNA_01157	0.32	+0.8
1,263,338	-		CCNA_01157	0.32	+1.3
1,263,354	+		CCNA_01157	0.33	+3.7
1,263,357	-		CCNA_01157	0.33	+0.5
1,263,388	+		CCNA_01157	0.35	+2.4
1,263,397	-		CCNA_01157	0.36	+1.3
1,263,431	+		CCNA_01157	0.38	+2.0
1,263,431	+		CCNA_01157	0.38	+1.7
1,263,439	-		CCNA_01157	0.39	+0.6
1,263,444	+		CCNA_01157	0.39	+1.0
1,263,459	+		CCNA_01157	0.40	+0.5
1,263,462	-		CCNA_01157	0.40	+1.6
1,263,540	+		CCNA_01157	0.46	+1.1
1,263,540	+		CCNA_01157	0.46	+1.0
1,263,540	+		CCNA_01157	0.46	+1.0
1,263,540	+		CCNA_01157	0.46	+1.7
1,263,540	+		CCNA_01157	0.46	+0.5
1,263,548	-		CCNA_01157	0.46	+0.0
1,263,548	-		CCNA_01157	0.46	+1.3
1,263,549	-		CCNA_01157	0.46	+0.8
1,263,549	-		CCNA_01157	0.46	+0.7
1,263,555	-		CCNA_01157	0.47	+1.0
1,263,588	-		CCNA_01157	0.49	+0.5
1,263,612	+		CCNA_01157	0.50	+1.2
1,263,612	+		CCNA_01157	0.50	+1.5
1,263,612	+		CCNA_01157	0.50	+1.4
1,263,612	+		CCNA_01157	0.50	+2.1
1,263,612	+		CCNA_01157	0.50	-0.0
1,263,612	+		CCNA_01157	0.50	+1.3
1,263,612	+		CCNA_01157	0.50	-0.8
1,263,612	+		CCNA_01157	0.50	+1.9
1,263,612	+		CCNA_01157	0.50	+1.6
1,263,620	-		CCNA_01157	0.51	-0.4
1,263,620	-		CCNA_01157	0.51	+1.3
1,263,620	-		CCNA_01157	0.51	+1.3
1,263,620	-		CCNA_01157	0.51	-1.1
1,263,630	+		CCNA_01157	0.52	+1.3
1,263,630	+		CCNA_01157	0.52	+0.2
1,263,630	+		CCNA_01157	0.52	+1.7
1,263,654	+		CCNA_01157	0.53	+3.3
1,263,660	-		CCNA_01157	0.54	-0.2
1,263,734	-		CCNA_01157	0.58	-1.0
1,263,743	-		CCNA_01157	0.59	-0.4
1,263,869	-		CCNA_01157	0.67	-0.1
1,263,880	+		CCNA_01157	0.68	-0.0
1,263,889	+		CCNA_01157	0.69	+1.9
1,263,940	-		CCNA_01157	0.72	-1.8
1,263,967	-		CCNA_01157	0.74	+0.6
1,263,967	-		CCNA_01157	0.74	+0.8
1,264,029	+		CCNA_01157	0.78	+0.8
1,264,039	-		CCNA_01157	0.79	-1.6
1,264,048	-		CCNA_01157	0.79	+2.0
1,264,056	+		CCNA_01157	0.80	+0.5
1,264,056	+		CCNA_01157	0.80	+0.8
1,264,056	+		CCNA_01157	0.80	+0.3
1,264,056	+		CCNA_01157	0.80	+1.1
1,264,056	+		CCNA_01157	0.80	+0.2
1,264,056	+		CCNA_01157	0.80	+0.2
1,264,062	+		CCNA_01157	0.80	+1.5
1,264,062	+		CCNA_01157	0.80	-0.5
1,264,062	+		CCNA_01157	0.80	+1.3
1,264,062	+		CCNA_01157	0.80	+1.2
1,264,062	+		CCNA_01157	0.80	+4.8
1,264,064	-		CCNA_01157	0.80	-0.2
1,264,064	-		CCNA_01157	0.80	-1.0
1,264,070	-		CCNA_01157	0.81	+1.5
1,264,070	-		CCNA_01157	0.81	-1.2
1,264,070	-		CCNA_01157	0.81	+0.4
1,264,091	-		CCNA_01157	0.82	-1.1
1,264,098	+		CCNA_01157	0.83	-0.7
1,264,098	+		CCNA_01157	0.83	-0.7
1,264,098	+		CCNA_01157	0.83	-0.1
1,264,106	-		CCNA_01157	0.83	-0.7
1,264,106	-		CCNA_01157	0.83	+1.3
1,264,117	+		CCNA_01157	0.84	-0.1
1,264,120	-		CCNA_01157	0.84	+2.3
1,264,120	-		CCNA_01157	0.84	-0.9
1,264,133	+		CCNA_01157	0.85	-0.2
1,264,133	+		CCNA_01157	0.85	+1.0
1,264,133	+		CCNA_01157	0.85	+2.5
1,264,133	+		CCNA_01157	0.85	+0.4
1,264,138	+		CCNA_01157	0.85	+1.9
1,264,138	+		CCNA_01157	0.85	+2.8
1,264,138	+		CCNA_01157	0.85	+0.3
1,264,146	-		CCNA_01157	0.86	+0.8
1,264,146	-		CCNA_01157	0.86	+0.6
1,264,188	-		CCNA_01157	0.89	+0.2
1,264,195	+		CCNA_01157	0.89	+2.0
1,264,209	+				+0.9
1,264,209	+				+1.1
1,264,210	-				+1.0
1,264,216	+				+1.6
1,264,224	-				-0.5
1,264,249	-				+2.7
1,264,260	+				-0.1
1,264,268	-				+0.4
1,264,307	+				+0.7
1,264,307	+				+1.4
1,264,307	+				+2.5
1,264,315	-				+0.8
1,264,337	+				-0.4
1,264,356	+				+2.2
1,264,356	+				+1.2
1,264,364	-				+0.7
1,264,399	+		CCNA_03999	0.10	+1.4
1,264,408	+		CCNA_03999	0.12	+0.2
1,264,427	+		CCNA_03999	0.17	+1.6
1,264,435	-		CCNA_03999	0.18	-0.1
1,264,453	+		CCNA_03999	0.23	+0.1
1,264,470	+		CCNA_03999	0.26	+1.3
1,264,475	+		CCNA_03999	0.27	+0.7
1,264,475	+		CCNA_03999	0.27	+2.1
1,264,475	+		CCNA_03999	0.27	+1.8
1,264,485	+		CCNA_03999	0.30	+0.6
1,264,485	+		CCNA_03999	0.30	-0.0
1,264,486	+		CCNA_03999	0.30	+3.6
1,264,497	+		CCNA_03999	0.32	+0.6
1,264,502	+		CCNA_03999	0.34	-0.3
1,264,502	+		CCNA_03999	0.34	+2.8
1,264,503	-		CCNA_03999	0.34	+1.1
1,264,510	-		CCNA_03999	0.35	+0.3
1,264,523	-		CCNA_03999	0.38	-0.8
1,264,538	+		CCNA_03999	0.42	-0.5
1,264,538	+		CCNA_03999	0.42	-0.4
1,264,539	+		CCNA_03999	0.42	-1.1
1,264,539	+		CCNA_03999	0.42	+1.0
1,264,540	+		CCNA_03999	0.42	+1.9
1,264,541	-		CCNA_03999	0.42	+0.4
1,264,546	-		CCNA_03999	0.43	+0.3
1,264,548	-		CCNA_03999	0.44	+0.4
1,264,563	+		CCNA_03999	0.47	-0.5
1,264,631	-		CCNA_03999	0.63	+1.0
1,264,633	+		CCNA_03999	0.63	+1.3
1,264,633	+		CCNA_03999	0.63	+1.0
1,264,633	+		CCNA_03999	0.63	-0.2
1,264,646	-		CCNA_03999	0.66	-0.7
1,264,650	+		CCNA_03999	0.67	+2.0
1,264,653	-		CCNA_03999	0.68	-0.2
1,264,738	-		CCNA_03999	0.87	+0.5
1,264,755	+				+2.1
1,264,755	+				+2.4
1,264,755	+				+1.9
1,264,755	+				+2.1
1,264,760	+				+3.3
1,264,763	-				+0.8
1,264,763	-				+0.3
1,264,775	+				+0.5
1,264,827	+				+1.1
1,264,856	+				+0.2
1,264,859	-				+1.0
1,264,859	-				+0.0
1,264,863	-				-0.2
1,264,873	+				-0.4
1,264,921	+				-2.2
1,264,929	-				-1.4
1,264,934	-				+1.1
1,264,934	-				+0.4
1,265,014	+		CCNA_01158	0.12	-1.5
1,265,027	-		CCNA_01158	0.12	-1.2
1,265,052	+		CCNA_01158	0.14	+1.1
1,265,060	-		CCNA_01158	0.14	-1.4
1,265,077	-		CCNA_01158	0.15	-0.8
1,265,077	-		CCNA_01158	0.15	-0.7
1,265,082	-		CCNA_01158	0.15	-0.3
1,265,082	-		CCNA_01158	0.15	-1.0
1,265,082	-		CCNA_01158	0.15	+1.7
1,265,118	-		CCNA_01158	0.17	-0.2
1,265,133	-		CCNA_01158	0.18	-1.3
1,265,137	+		CCNA_01158	0.18	-0.1
1,265,176	+		CCNA_01158	0.20	+0.6
1,265,202	+		CCNA_01158	0.21	+2.2
1,265,202	+		CCNA_01158	0.21	-1.1
1,265,210	-		CCNA_01158	0.22	+0.8
1,265,210	-		CCNA_01158	0.22	+0.2
1,265,212	+		CCNA_01158	0.22	+1.3
1,265,217	+		CCNA_01158	0.22	+0.2
1,265,220	-		CCNA_01158	0.22	-0.1
1,265,225	-		CCNA_01158	0.23	+0.9
1,265,252	+		CCNA_01158	0.24	-0.4
1,265,279	+		CCNA_01158	0.25	+0.1
1,265,288	+				+4.3
1,265,288	+		CCNA_01158	0.26	+1.3
1,265,289	+		CCNA_01158	0.26	-1.2
1,265,296	-		CCNA_01158	0.26	-1.6
1,265,349	-		CCNA_01158	0.29	+0.8