Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01151

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,253,726	-		CCNA_01149	0.89	-0.2
1,253,726	-		CCNA_01149	0.89	+0.6
1,253,728	+				+2.3
1,253,728	+		CCNA_01149	0.89	+0.6
1,253,736	-		CCNA_01149	0.90	-0.3
1,253,738	+		CCNA_01149	0.90	-1.3
1,253,759	+				+0.3
1,253,816	+				-0.7
1,253,816	+				+1.4
1,253,816	+				+1.7
1,253,816	+				-1.0
1,253,816	+				-1.1
1,253,816	+				+0.2
1,253,816	+				-0.1
1,253,816	+				+1.4
1,253,816	+				-0.6
1,253,816	+				-1.0
1,253,816	+				+2.1
1,253,816	+				+0.3
1,253,816	+				+0.3
1,253,824	-				-1.1
1,253,824	-				-2.1
1,253,824	-				+1.1
1,253,824	-				+0.3
1,253,824	-				-2.0
1,253,824	-				-0.1
1,253,824	-				+0.4
1,253,824	-				-0.4
1,253,824	-				-0.1
1,253,824	-				+0.4
1,253,861	+				+0.3
1,253,869	-				+0.9
1,253,891	+				+0.9
1,253,899	-				+1.7
1,253,899	-				+1.9
1,253,899	-				+0.0
1,253,899	-				-0.7
1,253,996	-				-1.0
1,254,102	+				+0.8
1,254,197	+				+0.1
1,254,205	-				+1.9
1,254,205	-				+0.8
1,254,226	+				+1.9
1,254,231	+				+2.3
1,254,294	-				+0.1
1,254,299	+				+0.4
1,254,362	-		CCNA_03891	0.21	-0.2
1,254,412	+		CCNA_03891	0.35	+0.3
1,254,420	-		CCNA_03891	0.37	+1.1
1,254,439	-		CCNA_03891	0.43	+3.4
1,254,440	+		CCNA_03891	0.43	-2.1
1,254,452	+		CCNA_03891	0.46	-0.4
1,254,458	+		CCNA_03891	0.48	-0.8
1,254,546	+		CCNA_03891	0.73	+0.0
1,254,576	-		CCNA_03891	0.82	+0.4
1,254,578	+		CCNA_03891	0.82	-0.7
1,254,578	+		CCNA_03891	0.82	-1.6
1,254,586	-		CCNA_03891	0.85	+1.7
1,254,593	+		CCNA_03891	0.87	+1.3
1,254,593	+		CCNA_03891	0.87	+1.3
1,254,593	+		CCNA_03891	0.87	-0.9
1,254,634	+				+1.3
1,254,664	-				-0.1
1,254,682	-				+0.4
1,254,810	+				+1.4
1,254,810	+				+2.1
1,254,827	+		CCNA_01151	0.11	+1.7
1,254,832	+		CCNA_01151	0.11	+0.6
1,254,832	+		CCNA_01151	0.11	+2.3
1,254,832	+		CCNA_01151	0.11	-0.5
1,254,854	+		CCNA_01151	0.14	+1.2
1,254,901	-		CCNA_01151	0.18	+0.6
1,254,919	+		CCNA_01151	0.20	+1.5
1,254,924	+		CCNA_01151	0.21	+1.7
1,254,960	+		CCNA_01151	0.24	-0.6
1,255,015	+		CCNA_01151	0.30	-0.2
1,255,028	+		CCNA_01151	0.31	+1.8
1,255,029	+		CCNA_01151	0.31	+2.7
1,255,069	+		CCNA_01151	0.35	+1.6
1,255,104	+		CCNA_01151	0.39	-0.1
1,255,105	-		CCNA_01151	0.39	+0.4
1,255,109	+		CCNA_01151	0.40	+1.7
1,255,117	-		CCNA_01151	0.40	+0.1
1,255,141	+				+3.3
1,255,148	-		CCNA_01151	0.43	+1.1
1,255,150	+		CCNA_01151	0.44	+1.0
1,255,150	-		CCNA_01151	0.44	-0.4
1,255,157	+		CCNA_01151	0.44	+0.2
1,255,173	+		CCNA_01151	0.46	+0.6
1,255,190	+		CCNA_01151	0.48	+0.2
1,255,237	+		CCNA_01151	0.53	-1.5
1,255,301	+		CCNA_01151	0.59	+1.1
1,255,333	+		CCNA_01151	0.62	+2.8
1,255,333	+		CCNA_01151	0.62	+1.7
1,255,357	+		CCNA_01151	0.65	-0.4
1,255,357	+		CCNA_01151	0.65	-1.6
1,255,357	+		CCNA_01151	0.65	-0.3
1,255,357	+		CCNA_01151	0.65	-0.1
1,255,357	+		CCNA_01151	0.65	+0.3
1,255,357	+		CCNA_01151	0.65	-0.7
1,255,365	-		CCNA_01151	0.66	+1.1
1,255,365	-		CCNA_01151	0.66	-0.3
1,255,365	-		CCNA_01151	0.66	+0.4
1,255,365	-		CCNA_01151	0.66	-1.2
1,255,370	+		CCNA_01151	0.66	+0.3
1,255,389	+		CCNA_01151	0.68	-0.3
1,255,394	+		CCNA_01151	0.68	-0.8
1,255,412	-		CCNA_01151	0.70	-1.0
1,255,412	-		CCNA_01151	0.70	-0.6
1,255,449	+		CCNA_01151	0.74	-1.4
1,255,456	-		CCNA_01151	0.75	+2.9
1,255,457	-		CCNA_01151	0.75	+0.7
1,255,457	-		CCNA_01151	0.75	+0.1
1,255,464	-		CCNA_01151	0.76	+0.3
1,255,499	-		CCNA_01151	0.79	+1.3
1,255,512	+		CCNA_01151	0.80	-0.3
1,255,539	-		CCNA_01151	0.83	+0.7
1,255,589	+		CCNA_01151	0.88	-0.7
1,255,591	+		CCNA_01151	0.89	-0.8
1,255,618	-				-0.1
1,255,641	-				-0.3
1,255,643	-				+0.7
1,255,659	+				-0.4
1,255,659	+				+0.1
1,255,659	+				-1.1
1,255,659	+				-1.0
1,255,666	-				-0.1
1,255,670	+				+1.1
1,255,670	+				+2.7
1,255,710	+				+0.6
1,255,713	-				+0.1
1,255,785	+				-0.7
1,255,785	+				+1.1
1,255,785	+				-0.4
1,255,785	+				-2.6
1,255,797	+		CCNA_01152	0.10	-0.6
1,255,810	-		CCNA_01152	0.12	+1.6
1,255,850	+		CCNA_01152	0.17	-1.9
1,255,888	-		CCNA_01152	0.21	+0.3
1,255,908	-		CCNA_01152	0.24	+0.3
1,255,941	+		CCNA_01152	0.28	+1.3
1,255,947	-		CCNA_01152	0.28	+0.6
1,255,949	-		CCNA_01152	0.29	-0.0
1,255,949	-		CCNA_01152	0.29	-1.1
1,255,961	+		CCNA_01152	0.30	-1.4
1,255,971	+		CCNA_01152	0.31	-1.3
1,255,971	+		CCNA_01152	0.31	+1.4
1,255,979	-		CCNA_01152	0.32	+0.1
1,255,995	+		CCNA_01152	0.34	-0.4
1,256,003	-		CCNA_01152	0.35	+0.3
1,256,009	+		CCNA_01152	0.36	+1.4
1,256,009	+		CCNA_01152	0.36	+0.3
1,256,034	+		CCNA_01152	0.39	+0.0
1,256,034	+		CCNA_01152	0.39	-0.7
1,256,046	+		CCNA_01152	0.40	-0.8
1,256,057	+		CCNA_01152	0.42	+0.2
1,256,091	+		CCNA_01152	0.46	+0.2
1,256,107	-		CCNA_01152	0.48	+1.1
1,256,111	+		CCNA_01152	0.48	-0.7
1,256,155	+		CCNA_01152	0.54	-0.8
1,256,191	-		CCNA_01152	0.58	+0.2
1,256,222	+		CCNA_01152	0.62	-0.4
1,256,239	+		CCNA_01152	0.64	+0.9
1,256,254	+		CCNA_01152	0.66	+1.9
1,256,254	+		CCNA_01152	0.66	-1.7
1,256,262	-		CCNA_01152	0.67	-0.8
1,256,262	-		CCNA_01152	0.67	-0.7
1,256,262	-		CCNA_01152	0.67	+1.1
1,256,281	-		CCNA_01152	0.69	+0.7
1,256,286	-		CCNA_01152	0.70	+1.7
1,256,315	+		CCNA_01152	0.73	+0.1
1,256,323	-		CCNA_01152	0.74	+0.2
1,256,337	+		CCNA_01152	0.76	-0.4
1,256,457	-				+0.4
1,256,520	+				-0.2
1,256,534	+				+1.0
1,256,560	+				+0.9
1,256,580	+				-1.2
1,256,602	-				-0.7
1,256,602	-				-0.4
1,256,627	+				+0.7
1,256,637	+				-1.2
1,256,645	-				-0.9
1,256,645	-				-0.3
1,256,678	+		CCNA_01153	0.11	-1.1
1,256,686	-		CCNA_01153	0.12	+1.1
1,256,690	+		CCNA_01153	0.12	+1.6