Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01141

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,244,163	+		CCNA_01140	0.54	+0.1
1,244,171	-		CCNA_01140	0.55	+1.4
1,244,171	-		CCNA_01140	0.55	+1.2
1,244,226	-		CCNA_01140	0.58	-0.4
1,244,229	-		CCNA_01140	0.58	+1.4
1,244,241	-		CCNA_01140	0.59	+0.8
1,244,246	-		CCNA_01140	0.59	-0.2
1,244,254	-		CCNA_01140	0.60	-0.5
1,244,323	+		CCNA_01140	0.64	+1.1
1,244,324	-		CCNA_01140	0.64	-0.6
1,244,327	+		CCNA_01140	0.64	+0.5
1,244,350	-		CCNA_01140	0.66	+0.2
1,244,350	-		CCNA_01140	0.66	+0.5
1,244,370	-		CCNA_01140	0.67	-1.3
1,244,401	-		CCNA_01140	0.69	-0.3
1,244,403	+		CCNA_01140	0.69	-0.9
1,244,406	-		CCNA_01140	0.69	-0.9
1,244,406	-		CCNA_01140	0.69	-0.7
1,244,413	-		CCNA_01140	0.70	+0.9
1,244,445	+		CCNA_01140	0.72	-0.3
1,244,469	+		CCNA_01140	0.73	-0.4
1,244,484	+		CCNA_01140	0.74	+1.2
1,244,492	-		CCNA_01140	0.75	+2.2
1,244,492	-		CCNA_01140	0.75	-1.3
1,244,492	-		CCNA_01140	0.75	-0.6
1,244,492	-		CCNA_01140	0.75	-0.5
1,244,502	-		CCNA_01140	0.75	+0.3
1,244,561	+		CCNA_01140	0.79	-0.8
1,244,609	-		CCNA_01140	0.82	-0.9
1,244,654	-		CCNA_01140	0.85	+0.7
1,244,662	+		CCNA_01140	0.85	-0.7
1,244,665	+		CCNA_01140	0.85	-0.0
1,244,665	+		CCNA_01140	0.85	+0.6
1,244,713	-		CCNA_01140	0.88	-0.2
1,244,748	+				-0.3
1,244,748	+				-0.4
1,244,748	+				-0.9
1,244,756	-				+2.6
1,244,756	-				-1.3
1,244,756	-				-0.8
1,244,756	-				+0.5
1,244,756	-				-1.0
1,244,756	-				-0.5
1,244,756	-				-1.4
1,244,767	+				+1.2
1,244,767	+				-1.0
1,244,772	+				+1.4
1,244,792	+				+0.4
1,244,804	+				-0.5
1,244,812	-				+0.5
1,244,848	+				-0.1
1,244,849	-				-0.1
1,244,856	-				-0.2
1,244,864	+				+0.1
1,244,866	-				+0.3
1,244,877	-				-1.1
1,244,907	-				-0.0
1,244,971	+				-0.1
1,244,998	+				-0.5
1,245,076	-				+0.5
1,245,085	+				+0.3
1,245,085	+				+0.9
1,245,093	-				+1.9
1,245,095	+				+0.7
1,245,103	-				-1.2
1,245,145	+				+1.3
1,245,290	-		CCNA_01141	0.12	+3.1
1,245,291	+		CCNA_01141	0.12	+2.0
1,245,291	+		CCNA_01141	0.12	+0.8
1,245,298	+		CCNA_01141	0.13	+1.0
1,245,317	+		CCNA_01141	0.14	+1.4
1,245,321	-		CCNA_01141	0.15	+0.7
1,245,325	-		CCNA_01141	0.15	+1.4
1,245,348	+		CCNA_01141	0.17	+1.1
1,245,384	+		CCNA_01141	0.21	+1.8
1,245,406	+		CCNA_01141	0.23	+3.1
1,245,416	+				+1.9
1,245,416	+		CCNA_01141	0.24	+0.7
1,245,418	-		CCNA_01141	0.24	-0.2
1,245,421	+		CCNA_01141	0.24	+1.3
1,245,442	+		CCNA_01141	0.26	+0.9
1,245,458	-		CCNA_01141	0.28	-0.2
1,245,488	+		CCNA_01141	0.30	+1.0
1,245,506	-		CCNA_01141	0.32	+0.8
1,245,514	-				+1.4
1,245,562	+		CCNA_01141	0.37	+2.0
1,245,573	+		CCNA_01141	0.38	+1.7
1,245,597	+		CCNA_01141	0.41	+2.5
1,245,619	+		CCNA_01141	0.43	+2.1
1,245,691	+		CCNA_01141	0.49	+0.9
1,245,691	+		CCNA_01141	0.49	+1.7
1,245,699	-		CCNA_01141	0.50	+0.1
1,245,718	-		CCNA_01141	0.52	-1.0
1,245,718	-		CCNA_01141	0.52	-0.6
1,245,747	+		CCNA_01141	0.55	-0.3
1,245,747	+		CCNA_01141	0.55	+1.3
1,245,755	-		CCNA_01141	0.55	+0.3
1,245,789	-		CCNA_01141	0.58	+0.9
1,245,809	+		CCNA_01141	0.60	+2.1
1,245,843	+		CCNA_01141	0.63	+2.9
1,245,843	+		CCNA_01141	0.63	+2.7
1,245,897	+		CCNA_01141	0.69	+2.2
1,245,931	-		CCNA_01141	0.72	+2.7
1,245,998	+		CCNA_01141	0.78	+2.7
1,246,015	+		CCNA_01141	0.80	+3.2
1,246,108	+		CCNA_01141	0.88	+2.5
1,246,203	-				+1.1
1,246,208	+				+2.5
1,246,208	+				+3.7
1,246,218	+				+3.3
1,246,235	-				+1.9
1,246,250	-				-0.0
1,246,295	-				-0.5
1,246,303	+				+2.2
1,246,387	+				-0.3
1,246,387	+				-0.3
1,246,387	+				-0.6
1,246,387	+				+1.7
1,246,387	+				-0.6
1,246,387	+				-0.1
1,246,387	+				-0.6
1,246,387	+				+0.5
1,246,395	-				-1.1
1,246,395	-				+0.7
1,246,395	-				-1.3
1,246,395	-				-0.3
1,246,395	-				+0.4
1,246,395	-				-0.1
1,246,395	-				-0.1
1,246,395	-				-0.3
1,246,406	+				+0.5
1,246,406	+				+1.7
1,246,406	+				+1.6
1,246,414	-				+0.2
1,246,414	-				-1.3
1,246,414	-				+0.8
1,246,414	-				-0.8
1,246,453	+				-0.3
1,246,471	-				+0.7
1,246,498	+				+0.6
1,246,498	+				-1.5
1,246,568	-				-1.1
1,246,583	-				+1.2
1,246,634	+				+1.1
1,246,634	+				-2.0
1,246,642	-				-0.4
1,246,642	-				-0.9
1,246,642	-				-0.8
1,246,644	+				+1.8
1,246,651	+				-0.7
1,246,652	-				+1.2
1,246,683	+				+0.4
1,246,690	-				+1.1
1,246,690	-				-0.8
1,246,696	+				-0.7
1,246,715	-				+2.7
1,246,728	+				-0.1
1,246,728	+				-0.9
1,246,728	+				-1.9
1,246,728	+				+1.2
1,246,728	+				+0.2
1,246,736	-				+1.2
1,246,741	-				-0.5
1,246,750	+				-0.7
1,246,758	-				+0.7
1,246,835	-				-0.2
1,246,971	+		CCNA_01142	0.11	-0.2
1,247,049	+		CCNA_01142	0.27	-0.8
1,247,081	+		CCNA_01142	0.34	+0.1
1,247,089	-		CCNA_01142	0.35	-1.2
1,247,106	+		CCNA_01142	0.39	+0.0
1,247,131	+		CCNA_01142	0.44	-0.7
1,247,137	-		CCNA_01142	0.45	+0.1
1,247,145	+		CCNA_01142	0.47	-0.1
1,247,158	-		CCNA_01142	0.50	+1.4
1,247,158	-		CCNA_01142	0.50	+1.4
1,247,214	-		CCNA_01142	0.62	+0.8
1,247,224	-		CCNA_01142	0.64	+0.4
1,247,228	+		CCNA_01142	0.65	+1.0