Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01115

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,218,572	-		CCNA_01113	0.46	+0.5
1,218,574	-		CCNA_01113	0.46	+0.7
1,218,582	-		CCNA_01113	0.47	+0.8
1,218,664	-		CCNA_01113	0.55	+1.3
1,218,672	-		CCNA_01113	0.56	+3.0
1,218,724	+		CCNA_01113	0.62	-1.9
1,218,732	-		CCNA_01113	0.63	-0.3
1,218,732	-		CCNA_01113	0.63	-1.1
1,218,732	-		CCNA_01113	0.63	-0.0
1,218,760	-		CCNA_01113	0.66	+0.5
1,218,765	-				+2.6
1,218,789	+		CCNA_01113	0.69	-0.5
1,218,789	+		CCNA_01113	0.69	+1.6
1,218,797	-		CCNA_01113	0.69	-1.5
1,218,803	-		CCNA_01113	0.70	+0.8
1,218,849	+		CCNA_01113	0.75	-0.8
1,218,851	+		CCNA_01113	0.75	-0.5
1,218,868	-		CCNA_01113	0.77	+0.8
1,218,876	-		CCNA_01113	0.78	-1.9
1,218,904	+		CCNA_01113	0.81	-1.9
1,218,904	+		CCNA_01113	0.81	-1.2
1,218,912	-		CCNA_01113	0.82	-1.5
1,219,008	-				+1.3
1,219,008	-				+1.9
1,219,026	-				-1.7
1,219,037	+				+0.1
1,219,052	+				-1.5
1,219,052	+				-1.2
1,219,060	-				+1.1
1,219,499	+				+0.9
1,219,518	-				+1.9
1,219,535	+				-0.1
1,219,543	-				+0.9
1,219,543	-				+1.9
1,219,554	+				-0.4
1,219,562	-				+1.6
1,219,596	+				-0.7
1,219,599	-				+1.6
1,219,601	-				+1.2
1,219,602	+				-0.8
1,219,610	-				+0.6
1,219,659	-		CCNA_01115	0.14	-1.6
1,219,692	-		CCNA_01115	0.18	-0.7
1,219,694	+		CCNA_01115	0.19	-1.0
1,219,715	-		CCNA_01115	0.21	-0.5
1,219,751	-		CCNA_01115	0.26	+2.2
1,219,751	-		CCNA_01115	0.26	+1.4
1,219,775	-		CCNA_01115	0.29	-0.6
1,219,812	-		CCNA_01115	0.33	-0.3
1,219,833	+		CCNA_01115	0.36	+1.1
1,219,834	-		CCNA_01115	0.36	-1.2
1,219,856	-		CCNA_01115	0.39	-1.0
1,219,861	-		CCNA_01115	0.40	+0.1
1,219,862	+		CCNA_01115	0.40	-0.5
1,219,862	+		CCNA_01115	0.40	+0.1
1,219,870	-		CCNA_01115	0.41	-3.8
1,219,870	-		CCNA_01115	0.41	-0.2
1,219,890	+		CCNA_01115	0.43	-0.2
1,219,890	+		CCNA_01115	0.43	+0.5
1,220,002	-		CCNA_01115	0.57	-0.6
1,220,033	-		CCNA_01115	0.61	-0.4
1,220,060	-		CCNA_01115	0.65	+0.1
1,220,061	+		CCNA_01115	0.65	+4.2
1,220,061	+		CCNA_01115	0.65	+4.8
1,220,092	-		CCNA_01115	0.69	+1.1
1,220,102	-		CCNA_01115	0.70	+1.2
1,220,113	+		CCNA_01115	0.71	+1.0
1,220,113	+		CCNA_01115	0.71	+0.2
1,220,123	+		CCNA_01115	0.73	-0.8
1,220,123	+		CCNA_01115	0.73	-1.2
1,220,130	+		CCNA_01115	0.74	+1.9
1,220,130	+		CCNA_01115	0.74	+2.6
1,220,131	-		CCNA_01115	0.74	+1.4
1,220,138	-		CCNA_01115	0.75	+1.6
1,220,138	-		CCNA_01115	0.75	+0.5
1,220,177	+		CCNA_01115	0.80	-0.3
1,220,177	+		CCNA_01115	0.80	+2.8
1,220,177	+		CCNA_01115	0.80	-1.8
1,220,177	+		CCNA_01115	0.80	+0.3
1,220,185	-		CCNA_01115	0.81	-1.5
1,220,185	-		CCNA_01115	0.81	-0.6
1,220,185	-		CCNA_01115	0.81	+0.1
1,220,185	-		CCNA_01115	0.81	+0.6
1,220,194	-		CCNA_01115	0.82	-1.7
1,220,194	-		CCNA_01115	0.82	-0.6
1,220,194	-		CCNA_01115	0.82	+1.6
1,220,212	+		CCNA_01115	0.84	-0.3
1,220,215	+		CCNA_01115	0.84	-0.2
1,220,252	-		CCNA_01115	0.89	-0.1
1,220,266	-				-0.9
1,220,298	+				+0.2
1,220,303	+				+2.8
1,220,303	+				+2.2
1,220,311	-				+0.3
1,220,311	-				-0.9
1,220,311	-				-0.0
1,220,315	+				-1.4
1,220,334	+				+0.1
1,220,342	-				+2.4
1,220,350	+				-2.3
1,220,352	+				-0.0
1,220,352	+				-0.6
1,220,387	+				-0.4
1,220,457	+				-0.2
1,220,457	+				-0.8
1,220,463	+				+2.2
1,220,465	-				+0.1
1,220,467	-				-0.5
1,220,467	-				-0.6
1,220,480	+				+1.0
1,220,480	+				-1.4
1,220,488	-				-0.4
1,220,496	+				+4.4
1,220,497	+				+2.9
1,220,569	-				+0.5
1,220,569	-				+0.9
1,220,569	-				+2.1
1,220,606	+				+1.8
1,220,655	+				+0.3
1,220,655	+				+1.7
1,220,660	+				+1.3
1,220,660	+				+2.2
1,220,672	+				+1.5
1,220,811	+		CCNA_01116	0.16	+1.9
1,220,828	+		CCNA_01116	0.17	+1.3
1,220,890	-		CCNA_01116	0.20	+1.2
1,220,913	+		CCNA_01116	0.22	+0.6
1,220,924	+		CCNA_01116	0.22	-1.1
1,221,020	+		CCNA_01116	0.28	+0.6
1,221,031	+		CCNA_01116	0.28	-0.4
1,221,031	+		CCNA_01116	0.28	+2.0
1,221,173	+		CCNA_01116	0.36	+1.5
1,221,173	+		CCNA_01116	0.36	-0.0
1,221,195	+		CCNA_01116	0.38	+2.4
1,221,214	+		CCNA_01116	0.39	-0.5
1,221,219	+		CCNA_01116	0.39	+0.5
1,221,316	+		CCNA_01116	0.44	+0.3
1,221,328	+		CCNA_01116	0.45	+2.4