Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01065

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01064 and CCNA_01065 are separated by 3 nucleotidesCCNA_01065 and CCNA_01066 are separated by 10 nucleotides CCNA_01064: CCNA_01064 - perosamine synthetase, at 1,167,891 to 1,169,006 _01064 CCNA_01065: CCNA_01065 - glycosyltransferase, at 1,169,010 to 1,170,047 _01065 CCNA_01066: CCNA_01066 - glycosyltransferase, at 1,170,058 to 1,171,095 _01066 Position (kb) 1169 1170 1171Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1168.026 kb on + strand, within CCNA_01064at 1168.075 kb on - strand, within CCNA_01064at 1168.077 kb on + strand, within CCNA_01064at 1168.078 kb on + strand, within CCNA_01064at 1168.078 kb on + strand, within CCNA_01064at 1168.078 kb on + strand, within CCNA_01064at 1168.194 kb on - strand, within CCNA_01064at 1168.216 kb on + strand, within CCNA_01064at 1168.216 kb on + strand, within CCNA_01064at 1168.224 kb on - strand, within CCNA_01064at 1168.224 kb on - strand, within CCNA_01064at 1168.224 kb on - strand, within CCNA_01064at 1168.246 kb on - strand, within CCNA_01064at 1168.246 kb on - strandat 1168.271 kb on + strand, within CCNA_01064at 1168.286 kb on + strand, within CCNA_01064at 1168.286 kb on + strand, within CCNA_01064at 1168.294 kb on - strand, within CCNA_01064at 1168.294 kb on - strand, within CCNA_01064at 1168.302 kb on - strand, within CCNA_01064at 1168.327 kb on - strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.336 kb on + strand, within CCNA_01064at 1168.344 kb on - strand, within CCNA_01064at 1168.344 kb on - strand, within CCNA_01064at 1168.344 kb on - strand, within CCNA_01064at 1168.344 kb on - strand, within CCNA_01064at 1168.344 kb on - strand, within CCNA_01064at 1168.365 kb on + strand, within CCNA_01064at 1168.529 kb on + strand, within CCNA_01064at 1168.536 kb on + strand, within CCNA_01064at 1168.536 kb on + strand, within CCNA_01064at 1168.637 kb on + strand, within CCNA_01064at 1168.638 kb on + strand, within CCNA_01064at 1168.640 kb on + strand, within CCNA_01064at 1168.659 kb on + strand, within CCNA_01064at 1168.659 kb on + strandat 1168.667 kb on - strand, within CCNA_01064at 1168.720 kb on - strand, within CCNA_01064at 1168.722 kb on + strand, within CCNA_01064at 1168.748 kb on + strand, within CCNA_01064at 1168.756 kb on + strand, within CCNA_01064at 1168.756 kb on + strand, within CCNA_01064at 1168.756 kb on - strand, within CCNA_01064at 1168.794 kb on - strand, within CCNA_01064at 1168.824 kb on - strand, within CCNA_01064at 1168.851 kb on + strand, within CCNA_01064at 1168.947 kb on + strandat 1168.947 kb on + strandat 1168.952 kb on + strandat 1168.955 kb on - strandat 1168.962 kb on + strandat 1168.988 kb on + strandat 1168.994 kb on + strandat 1168.995 kb on + strandat 1169.000 kb on + strandat 1169.000 kb on + strandat 1169.008 kb on - strandat 1169.019 kb on + strandat 1169.019 kb on + strandat 1169.019 kb on + strandat 1169.019 kb on + strandat 1169.019 kb on + strandat 1169.027 kb on + strandat 1169.027 kb on + strandat 1169.027 kb on + strandat 1169.035 kb on - strandat 1169.035 kb on - strandat 1169.040 kb on - strandat 1169.077 kb on + strandat 1169.077 kb on + strandat 1169.078 kb on - strandat 1169.120 kb on + strand, within CCNA_01065at 1169.120 kb on + strand, within CCNA_01065at 1169.193 kb on + strand, within CCNA_01065at 1169.213 kb on + strand, within CCNA_01065at 1169.238 kb on + strand, within CCNA_01065at 1169.238 kb on + strand, within CCNA_01065at 1169.252 kb on + strand, within CCNA_01065at 1169.267 kb on - strand, within CCNA_01065at 1169.279 kb on + strand, within CCNA_01065at 1169.279 kb on + strand, within CCNA_01065at 1169.303 kb on - strand, within CCNA_01065at 1169.318 kb on - strand, within CCNA_01065at 1169.347 kb on - strand, within CCNA_01065at 1169.347 kb on - strand, within CCNA_01065at 1169.370 kb on + strand, within CCNA_01065at 1169.552 kb on + strand, within CCNA_01065at 1169.567 kb on - strand, within CCNA_01065at 1169.573 kb on + strand, within CCNA_01065at 1169.581 kb on - strand, within CCNA_01065at 1169.602 kb on + strand, within CCNA_01065at 1169.602 kb on + strand, within CCNA_01065at 1169.604 kb on + strand, within CCNA_01065at 1169.610 kb on - strand, within CCNA_01065at 1169.640 kb on + strand, within CCNA_01065at 1169.640 kb on + strand, within CCNA_01065at 1169.657 kb on + strand, within CCNA_01065at 1169.658 kb on + strand, within CCNA_01065at 1169.665 kb on - strand, within CCNA_01065at 1169.674 kb on + strand, within CCNA_01065at 1169.701 kb on - strand, within CCNA_01065at 1169.751 kb on + strand, within CCNA_01065at 1169.759 kb on - strand, within CCNA_01065at 1169.779 kb on - strand, within CCNA_01065at 1169.786 kb on - strand, within CCNA_01065at 1169.788 kb on + strand, within CCNA_01065at 1169.802 kb on + strand, within CCNA_01065at 1169.820 kb on - strand, within CCNA_01065at 1169.870 kb on + strand, within CCNA_01065at 1169.870 kb on + strand, within CCNA_01065at 1169.878 kb on - strand, within CCNA_01065at 1169.878 kb on - strand, within CCNA_01065at 1169.889 kb on + strand, within CCNA_01065at 1169.889 kb on + strand, within CCNA_01065at 1169.889 kb on + strand, within CCNA_01065at 1169.897 kb on - strand, within CCNA_01065at 1169.897 kb on - strand, within CCNA_01065at 1169.897 kb on - strand, within CCNA_01065at 1169.902 kb on + strand, within CCNA_01065at 1169.902 kb on + strand, within CCNA_01065at 1169.921 kb on + strand, within CCNA_01065at 1170.107 kb on + strandat 1170.143 kb on + strandat 1170.146 kb on - strandat 1170.169 kb on - strand, within CCNA_01066at 1170.170 kb on - strand, within CCNA_01066at 1170.181 kb on + strand, within CCNA_01066at 1170.181 kb on + strand, within CCNA_01066at 1170.181 kb on + strand, within CCNA_01066at 1170.181 kb on + strand, within CCNA_01066at 1170.183 kb on - strand, within CCNA_01066at 1170.188 kb on + strand, within CCNA_01066at 1170.193 kb on - strand, within CCNA_01066at 1170.259 kb on - strand, within CCNA_01066at 1170.340 kb on + strand, within CCNA_01066at 1170.341 kb on + strand, within CCNA_01066at 1170.341 kb on + strand, within CCNA_01066at 1170.349 kb on - strand, within CCNA_01066at 1170.349 kb on - strand, within CCNA_01066at 1170.349 kb on - strand, within CCNA_01066at 1170.351 kb on + strand, within CCNA_01066at 1170.351 kb on + strand, within CCNA_01066at 1170.359 kb on - strand, within CCNA_01066at 1170.361 kb on + strand, within CCNA_01066at 1170.361 kb on + strand, within CCNA_01066at 1170.361 kb on + strand, within CCNA_01066at 1170.369 kb on - strand, within CCNA_01066at 1170.369 kb on - strand, within CCNA_01066at 1170.390 kb on + strand, within CCNA_01066at 1170.395 kb on - strand, within CCNA_01066at 1170.421 kb on + strand, within CCNA_01066at 1170.422 kb on - strand, within CCNA_01066at 1170.475 kb on + strand, within CCNA_01066at 1170.483 kb on - strand, within CCNA_01066at 1170.483 kb on - strand, within CCNA_01066at 1170.483 kb on - strand, within CCNA_01066at 1170.495 kb on + strand, within CCNA_01066at 1170.517 kb on - strand, within CCNA_01066at 1170.602 kb on - strand, within CCNA_01066at 1170.618 kb on + strand, within CCNA_01066at 1170.618 kb on - strand, within CCNA_01066at 1170.631 kb on + strand, within CCNA_01066at 1170.631 kb on + strand, within CCNA_01066at 1170.690 kb on + strand, within CCNA_01066at 1170.690 kb on + strand, within CCNA_01066at 1170.690 kb on + strand, within CCNA_01066at 1170.690 kb on + strand, within CCNA_01066at 1170.690 kb on + strand, within CCNA_01066at 1170.692 kb on - strand, within CCNA_01066at 1170.693 kb on - strand, within CCNA_01066at 1170.698 kb on - strand, within CCNA_01066at 1170.708 kb on + strand, within CCNA_01066at 1170.732 kb on - strand, within CCNA_01066at 1170.761 kb on + strand, within CCNA_01066at 1170.769 kb on - strand, within CCNA_01066at 1170.786 kb on - strand, within CCNA_01066at 1170.802 kb on + strand, within CCNA_01066at 1170.802 kb on + strand, within CCNA_01066at 1170.802 kb on + strand, within CCNA_01066at 1170.810 kb on - strand, within CCNA_01066at 1170.812 kb on + strand, within CCNA_01066at 1170.815 kb on - strand, within CCNA_01066at 1170.839 kb on + strand, within CCNA_01066at 1170.839 kb on + strand, within CCNA_01066at 1170.839 kb on + strand, within CCNA_01066at 1170.839 kb on + strand, within CCNA_01066at 1170.839 kb on + strand, within CCNA_01066at 1170.847 kb on - strand, within CCNA_01066at 1170.874 kb on + strand, within CCNA_01066at 1170.912 kb on + strand, within CCNA_01066at 1170.920 kb on - strand, within CCNA_01066at 1170.920 kb on - strand, within CCNA_01066at 1170.926 kb on + strand, within CCNA_01066at 1170.958 kb on + strand, within CCNA_01066at 1170.958 kb on + strand, within CCNA_01066at 1170.996 kb on + strandat 1171.037 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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1,168,026 + CCNA_01064 0.12 +1.5
1,168,075 - CCNA_01064 0.16 +0.6
1,168,077 + CCNA_01064 0.17 +1.5
1,168,078 + CCNA_01064 0.17 +2.8
1,168,078 + CCNA_01064 0.17 +2.1
1,168,078 + CCNA_01064 0.17 +3.4
1,168,194 - CCNA_01064 0.27 -0.8
1,168,216 + CCNA_01064 0.29 +1.7
1,168,216 + CCNA_01064 0.29 +1.6
1,168,224 - CCNA_01064 0.30 -0.5
1,168,224 - CCNA_01064 0.30 +2.8
1,168,224 - CCNA_01064 0.30 -1.5
1,168,246 - CCNA_01064 0.32 -1.2
1,168,246 - +2.0
1,168,271 + CCNA_01064 0.34 +2.2
1,168,286 + CCNA_01064 0.35 +2.9
1,168,286 + CCNA_01064 0.35 +1.6
1,168,294 - CCNA_01064 0.36 -1.2
1,168,294 - CCNA_01064 0.36 -0.3
1,168,302 - CCNA_01064 0.37 -0.4
1,168,327 - CCNA_01064 0.39 -0.8
1,168,336 + CCNA_01064 0.40 +2.2
1,168,336 + CCNA_01064 0.40 +1.6
1,168,336 + CCNA_01064 0.40 +1.4
1,168,336 + CCNA_01064 0.40 +1.7
1,168,336 + CCNA_01064 0.40 +2.6
1,168,336 + CCNA_01064 0.40 +1.1
1,168,336 + CCNA_01064 0.40 +3.2
1,168,336 + CCNA_01064 0.40 +1.6
1,168,336 + CCNA_01064 0.40 +1.9
1,168,336 + CCNA_01064 0.40 +2.0
1,168,344 - CCNA_01064 0.41 -2.4
1,168,344 - CCNA_01064 0.41 -0.9
1,168,344 - CCNA_01064 0.41 +1.0
1,168,344 - CCNA_01064 0.41 -0.8
1,168,344 - CCNA_01064 0.41 -1.2
1,168,365 + CCNA_01064 0.42 +1.8
1,168,529 + CCNA_01064 0.57 +2.5
1,168,536 + CCNA_01064 0.58 +1.3
1,168,536 + CCNA_01064 0.58 +2.6
1,168,637 + CCNA_01064 0.67 +2.7
1,168,638 + CCNA_01064 0.67 +2.4
1,168,640 + CCNA_01064 0.67 +1.5
1,168,659 + CCNA_01064 0.69 +3.0
1,168,659 + +4.5
1,168,667 - CCNA_01064 0.70 -0.7
1,168,720 - CCNA_01064 0.74 -0.3
1,168,722 + CCNA_01064 0.74 +3.5
1,168,748 + CCNA_01064 0.77 +2.4
1,168,756 + CCNA_01064 0.78 +2.5
1,168,756 + CCNA_01064 0.78 +2.7
1,168,756 - CCNA_01064 0.78 +0.5
1,168,794 - CCNA_01064 0.81 +0.3
1,168,824 - CCNA_01064 0.84 -0.0
1,168,851 + CCNA_01064 0.86 +3.2
1,168,947 + +4.3
1,168,947 + +2.7
1,168,952 + +3.9
1,168,955 - +1.3
1,168,962 + +2.5
1,168,988 + +2.5
1,168,994 + +2.5
1,168,995 + +3.3
1,169,000 + +0.7
1,169,000 + +1.1
1,169,008 - +1.7
1,169,019 + +2.2
1,169,019 + +1.9
1,169,019 + +3.5
1,169,019 + +2.7
1,169,019 + +2.8
1,169,027 + +2.9
1,169,027 + +1.9
1,169,027 + +2.3
1,169,035 - -1.6
1,169,035 - +2.0
1,169,040 - +1.7
1,169,077 + +2.3
1,169,077 + +2.1
1,169,078 - +1.0
1,169,120 + CCNA_01065 0.11 +2.5
1,169,120 + CCNA_01065 0.11 +3.0
1,169,193 + CCNA_01065 0.18 +2.5
1,169,213 + CCNA_01065 0.20 +1.8
1,169,238 + CCNA_01065 0.22 +1.0
1,169,238 + CCNA_01065 0.22 +1.9
1,169,252 + CCNA_01065 0.23 +4.0
1,169,267 - CCNA_01065 0.25 -0.4
1,169,279 + CCNA_01065 0.26 +2.9
1,169,279 + CCNA_01065 0.26 +2.2
1,169,303 - CCNA_01065 0.28 +0.3
1,169,318 - CCNA_01065 0.30 +0.1
1,169,347 - CCNA_01065 0.32 -0.6
1,169,347 - CCNA_01065 0.32 +0.0
1,169,370 + CCNA_01065 0.35 +2.2
1,169,552 + CCNA_01065 0.52 +2.0
1,169,567 - CCNA_01065 0.54 +0.9
1,169,573 + CCNA_01065 0.54 +2.9
1,169,581 - CCNA_01065 0.55 -0.3
1,169,602 + CCNA_01065 0.57 +2.7
1,169,602 + CCNA_01065 0.57 +2.3
1,169,604 + CCNA_01065 0.57 +2.1
1,169,610 - CCNA_01065 0.58 -0.6
1,169,640 + CCNA_01065 0.61 +3.1
1,169,640 + CCNA_01065 0.61 +2.8
1,169,657 + CCNA_01065 0.62 +1.9
1,169,658 + CCNA_01065 0.62 +3.1
1,169,665 - CCNA_01065 0.63 +2.5
1,169,674 + CCNA_01065 0.64 +2.8
1,169,701 - CCNA_01065 0.67 -1.0
1,169,751 + CCNA_01065 0.71 +2.5
1,169,759 - CCNA_01065 0.72 -0.7
1,169,779 - CCNA_01065 0.74 +0.1
1,169,786 - CCNA_01065 0.75 -0.7
1,169,788 + CCNA_01065 0.75 +3.0
1,169,802 + CCNA_01065 0.76 +3.2
1,169,820 - CCNA_01065 0.78 +2.3
1,169,870 + CCNA_01065 0.83 +2.0
1,169,870 + CCNA_01065 0.83 +2.5
1,169,878 - CCNA_01065 0.84 -0.8
1,169,878 - CCNA_01065 0.84 -1.3
1,169,889 + CCNA_01065 0.85 +2.7
1,169,889 + CCNA_01065 0.85 +1.9
1,169,889 + CCNA_01065 0.85 +2.7
1,169,897 - CCNA_01065 0.85 +0.5
1,169,897 - CCNA_01065 0.85 -0.8
1,169,897 - CCNA_01065 0.85 +0.8
1,169,902 + CCNA_01065 0.86 +3.5
1,169,902 + CCNA_01065 0.86 +3.1
1,169,921 + CCNA_01065 0.88 +2.2
1,170,107 + +1.9
1,170,143 + +2.8
1,170,146 - +1.0
1,170,169 - CCNA_01066 0.11 +0.6
1,170,170 - CCNA_01066 0.11 -0.0
1,170,181 + CCNA_01066 0.12 +2.7
1,170,181 + CCNA_01066 0.12 +2.3
1,170,181 + CCNA_01066 0.12 +2.8
1,170,181 + CCNA_01066 0.12 +2.3
1,170,183 - CCNA_01066 0.12 -1.4
1,170,188 + CCNA_01066 0.13 +2.6
1,170,193 - CCNA_01066 0.13 +0.5
1,170,259 - CCNA_01066 0.19 +0.3
1,170,340 + CCNA_01066 0.27 +2.4
1,170,341 + CCNA_01066 0.27 +2.5
1,170,341 + CCNA_01066 0.27 +1.1
1,170,349 - CCNA_01066 0.28 -1.0
1,170,349 - CCNA_01066 0.28 -0.2
1,170,349 - CCNA_01066 0.28 -1.0
1,170,351 + CCNA_01066 0.28 +1.5
1,170,351 + CCNA_01066 0.28 +3.5
1,170,359 - CCNA_01066 0.29 +0.2
1,170,361 + CCNA_01066 0.29 +2.0
1,170,361 + CCNA_01066 0.29 +2.6
1,170,361 + CCNA_01066 0.29 +3.0
1,170,369 - CCNA_01066 0.30 -1.0
1,170,369 - CCNA_01066 0.30 +2.6
1,170,390 + CCNA_01066 0.32 +2.9
1,170,395 - CCNA_01066 0.32 +0.2
1,170,421 + CCNA_01066 0.35 +2.6
1,170,422 - CCNA_01066 0.35 +0.4
1,170,475 + CCNA_01066 0.40 +2.5
1,170,483 - CCNA_01066 0.41 +1.3
1,170,483 - CCNA_01066 0.41 +1.6
1,170,483 - CCNA_01066 0.41 -1.5
1,170,495 + CCNA_01066 0.42 +3.4
1,170,517 - CCNA_01066 0.44 -0.1
1,170,602 - CCNA_01066 0.52 +1.8
1,170,618 + CCNA_01066 0.54 +2.1
1,170,618 - CCNA_01066 0.54 +0.1
1,170,631 + CCNA_01066 0.55 +2.4
1,170,631 + CCNA_01066 0.55 +2.1
1,170,690 + CCNA_01066 0.61 +2.3
1,170,690 + CCNA_01066 0.61 +2.3
1,170,690 + CCNA_01066 0.61 +2.2
1,170,690 + CCNA_01066 0.61 +3.4
1,170,690 + CCNA_01066 0.61 +2.6
1,170,692 - CCNA_01066 0.61 +0.1
1,170,693 - CCNA_01066 0.61 -0.9
1,170,698 - CCNA_01066 0.62 -1.2
1,170,708 + CCNA_01066 0.63 +3.2
1,170,732 - CCNA_01066 0.65 -1.0
1,170,761 + CCNA_01066 0.68 +2.7
1,170,769 - CCNA_01066 0.68 +0.2
1,170,786 - CCNA_01066 0.70 +0.5
1,170,802 + CCNA_01066 0.72 +2.5
1,170,802 + CCNA_01066 0.72 +3.1
1,170,802 + CCNA_01066 0.72 +2.1
1,170,810 - CCNA_01066 0.72 -1.7
1,170,812 + CCNA_01066 0.73 +1.0
1,170,815 - CCNA_01066 0.73 +0.5
1,170,839 + CCNA_01066 0.75 +2.6
1,170,839 + CCNA_01066 0.75 +2.7
1,170,839 + CCNA_01066 0.75 +2.3
1,170,839 + CCNA_01066 0.75 +1.0
1,170,839 + CCNA_01066 0.75 +2.7
1,170,847 - CCNA_01066 0.76 +0.6
1,170,874 + CCNA_01066 0.79 +2.6
1,170,912 + CCNA_01066 0.82 +2.9
1,170,920 - CCNA_01066 0.83 +0.3
1,170,920 - CCNA_01066 0.83 +0.2
1,170,926 + CCNA_01066 0.84 +2.2
1,170,958 + CCNA_01066 0.87 +2.4
1,170,958 + CCNA_01066 0.87 +1.9
1,170,996 + +2.2
1,171,037 + +2.1

Or see this region's nucleotide sequence