Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01063

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,166,290	-				-1.9
1,166,308	+				+3.0
1,166,316	-				-2.0
1,166,316	-				+0.9
1,166,321	-				+0.6
1,166,338	+				+3.2
1,166,344	+				+2.7
1,166,344	+				+2.6
1,166,344	+				+3.0
1,166,344	+				+2.6
1,166,344	+				+2.2
1,166,352	-				+0.2
1,166,352	-				+1.5
1,166,352	-				-0.4
1,166,386	-		CCNA_01062	0.12	+1.2
1,166,420	-		CCNA_01062	0.15	+1.8
1,166,452	+		CCNA_01062	0.19	+3.0
1,166,468	+		CCNA_01062	0.20	+2.5
1,166,506	+		CCNA_01062	0.24	+2.5
1,166,507	+		CCNA_01062	0.24	+3.2
1,166,515	-		CCNA_01062	0.25	-0.1
1,166,522	+		CCNA_01062	0.26	+3.1
1,166,522	+		CCNA_01062	0.26	+3.9
1,166,522	+		CCNA_01062	0.26	+3.3
1,166,543	+		CCNA_01062	0.28	+2.9
1,166,579	+		CCNA_01062	0.32	+2.8
1,166,587	-		CCNA_01062	0.32	-2.5
1,166,599	+		CCNA_01062	0.34	+1.9
1,166,635	+		CCNA_01062	0.37	+1.9
1,166,667	+		CCNA_01062	0.41	+1.9
1,166,675	-		CCNA_01062	0.41	-0.1
1,166,675	-		CCNA_01062	0.41	-0.7
1,166,704	+		CCNA_01062	0.44	+2.3
1,166,712	-		CCNA_01062	0.45	-0.5
1,166,737	+		CCNA_01062	0.48	+2.6
1,166,737	+		CCNA_01062	0.48	+3.8
1,166,737	+		CCNA_01062	0.48	+3.0
1,166,737	+		CCNA_01062	0.48	+2.9
1,166,737	+		CCNA_01062	0.48	+2.8
1,166,737	+		CCNA_01062	0.48	+3.0
1,166,737	+		CCNA_01062	0.48	+3.3
1,166,737	+		CCNA_01062	0.48	+3.1
1,166,737	+		CCNA_01062	0.48	+3.5
1,166,745	-		CCNA_01062	0.49	+1.2
1,166,745	-		CCNA_01062	0.49	+1.0
1,166,745	-		CCNA_01062	0.49	-0.7
1,166,745	-		CCNA_01062	0.49	-1.0
1,166,751	+		CCNA_01062	0.49	+2.7
1,166,755	-		CCNA_01062	0.50	+1.7
1,166,759	-		CCNA_01062	0.50	+2.2
1,166,761	+		CCNA_01062	0.50	+2.7
1,166,775	+		CCNA_01062	0.52	+2.6
1,166,775	+		CCNA_01062	0.52	+1.9
1,166,775	+		CCNA_01062	0.52	+2.6
1,166,783	-		CCNA_01062	0.52	-0.2
1,166,898	+		CCNA_01062	0.64	+2.4
1,166,898	-		CCNA_01062	0.64	+0.7
1,166,934	-		CCNA_01062	0.68	-1.2
1,166,947	+		CCNA_01062	0.69	+3.9
1,166,947	+		CCNA_01062	0.69	+3.3
1,166,947	+		CCNA_01062	0.69	+2.5
1,166,947	+		CCNA_01062	0.69	+2.4
1,166,955	-		CCNA_01062	0.70	+0.2
1,166,955	-		CCNA_01062	0.70	-0.8
1,166,955	-		CCNA_01062	0.70	-0.2
1,166,955	-		CCNA_01062	0.70	-0.0
1,166,962	-		CCNA_01062	0.71	+2.4
1,166,988	-		CCNA_01062	0.73	-0.0
1,167,014	+		CCNA_01062	0.76	+3.1
1,167,019	+		CCNA_01062	0.77	+2.4
1,167,019	+		CCNA_01062	0.77	+2.0
1,167,019	+		CCNA_01062	0.77	+3.0
1,167,019	+		CCNA_01062	0.77	+2.0
1,167,019	+		CCNA_01062	0.77	+2.1
1,167,019	+		CCNA_01062	0.77	+2.1
1,167,019	+		CCNA_01062	0.77	+1.5
1,167,019	+		CCNA_01062	0.77	+2.5
1,167,019	+		CCNA_01062	0.77	+1.5
1,167,022	-		CCNA_01062	0.77	-1.0
1,167,027	-		CCNA_01062	0.77	+1.2
1,167,027	-		CCNA_01062	0.77	+1.0
1,167,027	-		CCNA_01062	0.77	+1.7
1,167,027	-		CCNA_01062	0.77	+1.6
1,167,027	-		CCNA_01062	0.77	-0.1
1,167,027	-		CCNA_01062	0.77	+0.0
1,167,027	-		CCNA_01062	0.77	-0.0
1,167,027	-		CCNA_01062	0.77	-1.9
1,167,027	-		CCNA_01062	0.77	+0.5
1,167,037	+		CCNA_01062	0.78	+2.8
1,167,039	+		CCNA_01062	0.79	+2.2
1,167,065	+		CCNA_01062	0.81	+3.2
1,167,083	-		CCNA_01062	0.83	-2.2
1,167,151	+				+2.6
1,167,151	+				+2.9
1,167,157	+				+2.4
1,167,157	+				+2.5
1,167,159	-				+0.0
1,167,299	+				+3.5
1,167,308	-				+2.7
1,167,308	-				+2.6
1,167,310	+				+3.8
1,167,382	+		CCNA_01063	0.21	+3.7
1,167,382	+		CCNA_01063	0.21	+3.7
1,167,382	+		CCNA_01063	0.21	+3.5
1,167,382	+		CCNA_01063	0.21	+3.4
1,167,382	+		CCNA_01063	0.21	+3.4
1,167,382	+		CCNA_01063	0.21	+3.0
1,167,390	-		CCNA_01063	0.22	+2.1
1,167,390	-		CCNA_01063	0.22	+0.9
1,167,390	-		CCNA_01063	0.22	+0.0
1,167,390	-		CCNA_01063	0.22	+0.7
1,167,390	-		CCNA_01063	0.22	+0.3
1,167,390	-		CCNA_01063	0.22	+0.7
1,167,390	-		CCNA_01063	0.22	+0.4
1,167,392	+		CCNA_01063	0.22	+3.5
1,167,400	-		CCNA_01063	0.24	-0.9
1,167,442	-		CCNA_01063	0.30	+3.6
1,167,442	-		CCNA_01063	0.30	+3.4
1,167,444	+		CCNA_01063	0.30	+3.4
1,167,444	+		CCNA_01063	0.30	+3.4
1,167,525	+		CCNA_01063	0.43	+3.8
1,167,533	-		CCNA_01063	0.44	-1.3
1,167,533	-		CCNA_01063	0.44	+1.8
1,167,533	-		CCNA_01063	0.44	+0.5
1,167,535	+		CCNA_01063	0.44	+3.9
1,167,543	-		CCNA_01063	0.46	+2.8
1,167,563	+		CCNA_01063	0.49	+3.3
1,167,571	-		CCNA_01063	0.50	+2.1
1,167,576	-		CCNA_01063	0.51	-0.1
1,167,576	-		CCNA_01063	0.51	+1.0
1,167,576	-		CCNA_01063	0.51	+0.9
1,167,589	+		CCNA_01063	0.53	+3.9
1,167,594	+		CCNA_01063	0.54	+3.8
1,167,621	-		CCNA_01063	0.58	-0.0
1,167,642	+		CCNA_01063	0.61	+3.8
1,167,656	-		CCNA_01063	0.63	+0.9
1,167,658	+		CCNA_01063	0.63	+3.9
1,167,666	-		CCNA_01063	0.65	+0.3
1,167,712	+		CCNA_01063	0.72	+3.6
1,167,712	+		CCNA_01063	0.72	+3.9
1,167,712	+		CCNA_01063	0.72	+3.3
1,167,720	-		CCNA_01063	0.73	+0.7
1,167,733	+		CCNA_01063	0.75	+3.6
1,167,765	-		CCNA_01063	0.80	-0.7
1,167,768	+		CCNA_01063	0.80	+3.4
1,167,776	-		CCNA_01063	0.82	+0.8
1,167,873	+				-0.5
1,167,873	+				+0.5
1,167,873	+				+1.6
1,167,873	+				+1.3
1,167,875	-				+0.9
1,167,881	-				-1.7
1,167,881	-				-0.7
1,167,881	-				+2.5
1,167,881	-				-0.5
1,167,942	+				+2.7
1,167,960	-				+1.0
1,167,975	+				+2.1
1,167,982	-				-0.1
1,167,990	+				+2.9
1,168,026	+		CCNA_01064	0.12	+1.5
1,168,075	-		CCNA_01064	0.16	+0.6
1,168,077	+		CCNA_01064	0.17	+1.5
1,168,078	+		CCNA_01064	0.17	+2.8
1,168,078	+		CCNA_01064	0.17	+2.1
1,168,078	+		CCNA_01064	0.17	+3.4
1,168,194	-		CCNA_01064	0.27	-0.8
1,168,216	+		CCNA_01064	0.29	+1.7
1,168,216	+		CCNA_01064	0.29	+1.6
1,168,224	-		CCNA_01064	0.30	-0.5
1,168,224	-		CCNA_01064	0.30	+2.8
1,168,224	-		CCNA_01064	0.30	-1.5
1,168,246	-		CCNA_01064	0.32	-1.2
1,168,246	-				+2.0
1,168,271	+		CCNA_01064	0.34	+2.2
1,168,286	+		CCNA_01064	0.35	+2.9
1,168,286	+		CCNA_01064	0.35	+1.6
1,168,294	-		CCNA_01064	0.36	-1.2
1,168,294	-		CCNA_01064	0.36	-0.3
1,168,302	-		CCNA_01064	0.37	-0.4
1,168,327	-		CCNA_01064	0.39	-0.8
1,168,336	+		CCNA_01064	0.40	+2.2
1,168,336	+		CCNA_01064	0.40	+1.6
1,168,336	+		CCNA_01064	0.40	+1.4
1,168,336	+		CCNA_01064	0.40	+1.7
1,168,336	+		CCNA_01064	0.40	+2.6
1,168,336	+		CCNA_01064	0.40	+1.1
1,168,336	+		CCNA_01064	0.40	+3.2
1,168,336	+		CCNA_01064	0.40	+1.6
1,168,336	+		CCNA_01064	0.40	+1.9
1,168,336	+		CCNA_01064	0.40	+2.0
1,168,344	-		CCNA_01064	0.41	-2.4
1,168,344	-		CCNA_01064	0.41	-0.9
1,168,344	-		CCNA_01064	0.41	+1.0
1,168,344	-		CCNA_01064	0.41	-0.8
1,168,344	-		CCNA_01064	0.41	-1.2
1,168,365	+		CCNA_01064	0.42	+1.8
1,168,529	+		CCNA_01064	0.57	+2.5
1,168,536	+		CCNA_01064	0.58	+1.3
1,168,536	+		CCNA_01064	0.58	+2.6
1,168,637	+		CCNA_01064	0.67	+2.7
1,168,638	+		CCNA_01064	0.67	+2.4
1,168,640	+		CCNA_01064	0.67	+1.5
1,168,659	+		CCNA_01064	0.69	+3.0
1,168,659	+				+4.5
1,168,667	-		CCNA_01064	0.70	-0.7
1,168,720	-		CCNA_01064	0.74	-0.3
1,168,722	+		CCNA_01064	0.74	+3.5
1,168,748	+		CCNA_01064	0.77	+2.4
1,168,756	+		CCNA_01064	0.78	+2.5
1,168,756	+		CCNA_01064	0.78	+2.7
1,168,756	-		CCNA_01064	0.78	+0.5
1,168,794	-		CCNA_01064	0.81	+0.3
1,168,824	-		CCNA_01064	0.84	-0.0
1,168,851	+		CCNA_01064	0.86	+3.2