Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01042

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,136,315	+		CCNA_01040	0.84	-0.0
1,136,321	-		CCNA_01040	0.85	-1.1
1,136,321	-		CCNA_01040	0.85	-0.5
1,136,345	-		CCNA_01040	0.86	-0.5
1,136,365	-		CCNA_01040	0.88	-0.0
1,136,426	-				+1.7
1,136,452	+				+1.1
1,136,529	+				+0.9
1,136,529	+				-1.7
1,136,537	-				+1.2
1,136,552	+				-0.0
1,136,598	+		CCNA_01041	0.21	+2.1
1,136,606	-		CCNA_01041	0.27	-2.4
1,136,606	-		CCNA_01041	0.27	+1.6
1,136,606	-		CCNA_01041	0.27	-1.1
1,136,671	+		CCNA_01041	0.75	+1.3
1,136,671	+		CCNA_01041	0.75	-1.2
1,136,671	+		CCNA_01041	0.75	+0.8
1,136,671	+		CCNA_01041	0.75	-0.5
1,136,679	-		CCNA_01041	0.81	-0.3
1,136,720	+				-0.7
1,136,739	+				-1.6
1,136,739	+				+0.2
1,136,739	+				-1.0
1,136,739	+				-0.8
1,136,747	-				-0.7
1,136,747	-				+0.4
1,136,747	-				+0.5
1,136,748	-				-1.7
1,136,752	+				+1.5
1,136,828	-				-0.0
1,136,844	+				+2.1
1,136,872	+				-0.5
1,136,880	-				-0.8
1,136,880	-				+0.7
1,136,888	-				+1.1
1,136,926	-				+0.1
1,136,932	-				+1.8
1,136,934	+				+0.9
1,136,934	+				+0.3
1,136,934	+				+0.3
1,136,942	-				+0.6
1,136,944	+				+2.5
1,136,952	-				+0.2
1,136,963	-				+1.1
1,136,990	+				+0.9
1,137,008	-				+0.2
1,137,093	-				-0.4
1,137,098	-				-0.4
1,137,101	+				+1.2
1,137,119	+				+0.1
1,137,127	-				+1.7
1,137,128	-				+0.8
1,137,161	+				+0.1
1,137,161	+				-0.4
1,137,161	+				+0.2
1,137,161	+				+0.5
1,137,169	-				-1.3
1,137,169	-				-1.7
1,137,205	-				+1.1
1,137,207	-				+1.3
1,137,264	-				+2.0
1,137,265	+				+0.7
1,137,271	-				+2.2
1,137,273	-				+2.2
1,137,274	+				+0.3
1,137,284	+				-0.7
1,137,333	+				+1.3
1,137,333	+				-0.5
1,137,362	-				+2.7
1,137,363	-				+1.0
1,137,363	-				+2.1
1,137,368	-				+1.8
1,137,373	-				+1.9
1,137,376	-				+2.4
1,137,396	+				+0.3
1,137,404	-				+3.4
1,137,421	-				+1.9
1,137,465	+				-0.6
1,137,474	-				+2.0
1,137,505	-				+1.0
1,137,510	+				+1.2
1,137,510	+				+1.1
1,137,516	+				-0.0
1,137,516	+				-1.4
1,137,524	-		CCNA_01042	0.10	+2.4
1,137,524	-		CCNA_01042	0.10	+2.8
1,137,524	-		CCNA_01042	0.10	+2.4
1,137,524	-		CCNA_01042	0.10	+2.5
1,137,524	-		CCNA_01042	0.10	+2.6
1,137,531	+		CCNA_01042	0.11	+0.6
1,137,531	+		CCNA_01042	0.11	-0.6
1,137,584	-		CCNA_01042	0.13	+2.1
1,137,584	-		CCNA_01042	0.13	+1.7
1,137,584	-		CCNA_01042	0.13	-0.7
1,137,621	-		CCNA_01042	0.14	+1.1
1,137,632	+		CCNA_01042	0.15	+0.3
1,137,640	-		CCNA_01042	0.15	+0.7
1,137,651	+		CCNA_01042	0.15	+0.5
1,137,676	+		CCNA_01042	0.16	-1.7
1,137,677	-		CCNA_01042	0.16	+0.6
1,137,678	+		CCNA_01042	0.16	-1.0
1,137,684	-		CCNA_01042	0.17	+0.4
1,137,684	-		CCNA_01042	0.17	+1.6
1,137,684	-		CCNA_01042	0.17	+0.8
1,137,711	+		CCNA_01042	0.18	+1.6
1,137,711	+		CCNA_01042	0.18	-1.0
1,137,727	+		CCNA_01042	0.18	+0.3
1,137,735	-		CCNA_01042	0.19	+1.5
1,137,800	-		CCNA_01042	0.21	-1.9
1,137,814	+		CCNA_01042	0.22	+0.7
1,137,822	-		CCNA_01042	0.22	-0.2
1,137,826	+		CCNA_01042	0.22	+0.6
1,137,834	-		CCNA_01042	0.23	+0.7
1,137,834	-		CCNA_01042	0.23	+1.0
1,137,838	-		CCNA_01042	0.23	-0.3
1,137,840	+		CCNA_01042	0.23	+1.5
1,137,875	+		CCNA_01042	0.24	-1.9
1,137,882	-		CCNA_01042	0.25	+0.5
1,137,882	-		CCNA_01042	0.25	+1.6
1,137,892	-		CCNA_01042	0.25	-0.7
1,137,895	+		CCNA_01042	0.25	+1.5
1,137,910	+		CCNA_01042	0.26	+0.8
1,137,961	-		CCNA_01042	0.28	+1.4
1,138,051	-		CCNA_01042	0.31	+2.0
1,138,058	-		CCNA_01042	0.32	+1.4
1,138,076	-		CCNA_01042	0.32	+1.4
1,138,076	-		CCNA_01042	0.32	+0.5
1,138,095	-		CCNA_01042	0.33	+1.1
1,138,097	+		CCNA_01042	0.33	-0.5
1,138,100	+		CCNA_01042	0.33	+0.2
1,138,105	+		CCNA_01042	0.34	+0.9
1,138,105	+		CCNA_01042	0.34	+1.5
1,138,148	-		CCNA_01042	0.35	-1.2
1,138,156	-		CCNA_01042	0.36	+0.3
1,138,162	-		CCNA_01042	0.36	-0.4
1,138,198	+		CCNA_01042	0.37	-0.5
1,138,206	-		CCNA_01042	0.38	+1.1
1,138,206	-		CCNA_01042	0.38	+2.9
1,138,206	-		CCNA_01042	0.38	-0.6
1,138,218	+		CCNA_01042	0.38	-0.7
1,138,218	+		CCNA_01042	0.38	-0.0
1,138,225	+		CCNA_01042	0.38	+0.7
1,138,226	-		CCNA_01042	0.38	-2.2
1,138,226	-		CCNA_01042	0.38	+0.0
1,138,233	-		CCNA_01042	0.39	+0.8
1,138,233	-		CCNA_01042	0.39	+0.2
1,138,233	-		CCNA_01042	0.39	-0.3
1,138,267	+		CCNA_01042	0.40	+1.7
1,138,268	-		CCNA_01042	0.40	-1.1
1,138,307	+		CCNA_01042	0.42	-2.5
1,138,315	-		CCNA_01042	0.42	+0.0
1,138,315	-		CCNA_01042	0.42	-0.7
1,138,325	-		CCNA_01042	0.42	-0.5
1,138,348	-				+1.7
1,138,352	+		CCNA_01042	0.43	+0.9
1,138,360	-		CCNA_01042	0.44	+0.6
1,138,360	-		CCNA_01042	0.44	+0.8
1,138,360	-		CCNA_01042	0.44	-0.0
1,138,405	-		CCNA_01042	0.46	+0.5
1,138,415	-		CCNA_01042	0.46	+0.9
1,138,439	-		CCNA_01042	0.47	+0.4
1,138,443	+		CCNA_01042	0.47	+0.5
1,138,452	+		CCNA_01042	0.47	-1.8
1,138,452	-		CCNA_01042	0.47	-0.1
1,138,460	-		CCNA_01042	0.48	-0.5
1,138,460	-		CCNA_01042	0.48	-0.1
1,138,463	+		CCNA_01042	0.48	+0.5
1,138,497	-		CCNA_01042	0.49	-0.1
1,138,504	+		CCNA_01042	0.50	-0.9
1,138,509	+		CCNA_01042	0.50	+1.7
1,138,509	+		CCNA_01042	0.50	-0.5
1,138,509	+		CCNA_01042	0.50	-0.4
1,138,509	+		CCNA_01042	0.50	+0.2
1,138,517	-		CCNA_01042	0.50	+0.4
1,138,517	-		CCNA_01042	0.50	+0.9
1,138,558	-		CCNA_01042	0.52	+1.4
1,138,572	-		CCNA_01042	0.52	-0.0
1,138,577	-		CCNA_01042	0.52	+1.3
1,138,621	-		CCNA_01042	0.54	-0.4
1,138,647	-		CCNA_01042	0.55	+1.0
1,138,665	+		CCNA_01042	0.56	-2.4
1,138,681	-		CCNA_01042	0.57	+0.2
1,138,683	+		CCNA_01042	0.57	-0.3
1,138,683	+		CCNA_01042	0.57	-0.1
1,138,683	+		CCNA_01042	0.57	+0.5
1,138,683	+		CCNA_01042	0.57	+0.2
1,138,691	-		CCNA_01042	0.57	+1.9
1,138,714	-		CCNA_01042	0.58	+0.2
1,138,835	+		CCNA_01042	0.63	-0.9
1,138,838	-		CCNA_01042	0.63	+1.6
1,138,838	-		CCNA_01042	0.63	-0.5
1,138,838	-		CCNA_01042	0.63	-0.3
1,138,891	+		CCNA_01042	0.65	+1.0
1,138,891	+		CCNA_01042	0.65	-1.8
1,138,899	-		CCNA_01042	0.65	-0.2
1,138,939	+		CCNA_01042	0.67	+0.5
1,138,952	-		CCNA_01042	0.68	-1.1
1,138,952	-		CCNA_01042	0.68	+2.6
1,138,952	-		CCNA_01042	0.68	-0.6
1,138,975	-		CCNA_01042	0.68	+0.5
1,138,988	-		CCNA_01042	0.69	-0.6
1,138,999	-		CCNA_01042	0.69	+2.0
1,139,028	+		CCNA_01042	0.71	+1.7
1,139,089	+		CCNA_01042	0.73	-1.1
1,139,097	-		CCNA_01042	0.73	-0.3
1,139,161	-		CCNA_01042	0.76	+0.2
1,139,227	+		CCNA_01042	0.79	+1.2
1,139,227	+		CCNA_01042	0.79	-0.4
1,139,235	-		CCNA_01042	0.79	-0.7
1,139,235	-		CCNA_01042	0.79	+1.5
1,139,351	+		CCNA_01042	0.83	-1.0
1,139,354	-		CCNA_01042	0.84	+2.0
1,139,359	-		CCNA_01042	0.84	+1.0
1,139,362	-		CCNA_01042	0.84	-0.6
1,139,368	+		CCNA_01042	0.84	-1.3
1,139,376	-		CCNA_01042	0.84	+1.7
1,139,382	+		CCNA_01042	0.85	-0.3
1,139,382	+		CCNA_01042	0.85	-0.3
1,139,390	-		CCNA_01042	0.85	-0.6
1,139,390	-		CCNA_01042	0.85	-0.9
1,139,390	-		CCNA_01042	0.85	+0.1
1,139,450	-		CCNA_01042	0.87	-0.2
1,139,493	+		CCNA_01042	0.89	+2.8
1,139,506	+		CCNA_01042	0.90	+0.5
1,139,506	+		CCNA_01042	0.90	-0.3
1,139,521	+				+1.2
1,139,539	+				+0.9
1,139,627	-				-0.5
1,139,641	-				-0.7
1,139,671	+				-0.7
1,139,673	+				-1.0
1,139,679	-				+0.7
1,139,680	+				+0.1
1,139,681	-				+0.8
1,139,688	-				+0.3
1,139,690	+				+0.7
1,139,692	+				-1.4
1,139,694	-				+0.9
1,139,696	+				-1.5
1,139,696	+				+0.5
1,139,696	+				+0.0
1,139,704	-				+1.0
1,139,707	+				-0.2
1,139,738	+				-1.1
1,139,750	-				-0.7
1,139,864	-		CCNA_01043	0.56	-0.2
1,139,880	-		CCNA_01043	0.65	-1.5
1,139,880	-		CCNA_01043	0.65	-1.9
1,139,894	+		CCNA_01043	0.73	-0.3
1,139,915	-		CCNA_01043	0.84	-2.1
1,140,012	-				-0.3
1,140,078	+				-1.6
1,140,126	+				-0.7
1,140,148	+				-1.5
1,140,149	-				+1.2
1,140,162	+				+1.0
1,140,169	-				+0.9
1,140,170	-				-2.2
1,140,190	-		CCNA_01044	0.10	+0.1
1,140,218	-		CCNA_01044	0.15	+0.3
1,140,231	-		CCNA_01044	0.17	+0.2
1,140,240	+		CCNA_01044	0.18	+0.3
1,140,271	-		CCNA_01044	0.23	-1.2
1,140,317	-		CCNA_01044	0.30	+0.1
1,140,339	+		CCNA_01044	0.34	-0.7
1,140,339	+		CCNA_01044	0.34	-2.1
1,140,339	+		CCNA_01044	0.34	+0.0
1,140,339	+		CCNA_01044	0.34	+0.2
1,140,339	+		CCNA_01044	0.34	+1.1
1,140,339	+		CCNA_01044	0.34	-2.2
1,140,339	+		CCNA_01044	0.34	+0.9
1,140,339	+		CCNA_01044	0.34	+3.0
1,140,347	-		CCNA_01044	0.35	-0.2
1,140,347	-		CCNA_01044	0.35	-0.3
1,140,362	-		CCNA_01044	0.38	-2.3
1,140,405	+		CCNA_01044	0.44	-1.6
1,140,405	+		CCNA_01044	0.44	+1.0
1,140,410	+		CCNA_01044	0.45	+0.6
1,140,410	+		CCNA_01044	0.45	+1.1
1,140,410	+		CCNA_01044	0.45	-0.3
1,140,415	+		CCNA_01044	0.46	-0.6
1,140,415	+		CCNA_01044	0.46	-0.8
1,140,423	-		CCNA_01044	0.47	+2.2
1,140,428	-		CCNA_01044	0.48	-2.2
1,140,446	+		CCNA_01044	0.51	+0.6
1,140,448	+		CCNA_01044	0.51	+1.0
1,140,471	-		CCNA_01044	0.55	-0.6
1,140,471	-		CCNA_01044	0.55	+0.3
1,140,514	+		CCNA_01044	0.62	-0.6
1,140,534	+		CCNA_01044	0.65	+4.3
1,140,534	+		CCNA_01044	0.65	+4.0
1,140,534	+		CCNA_01044	0.65	+4.2
1,140,534	+		CCNA_01044	0.65	+4.6
1,140,534	+		CCNA_01044	0.65	+4.5
1,140,534	+		CCNA_01044	0.65	+4.7
1,140,534	+		CCNA_01044	0.65	+4.1
1,140,534	+		CCNA_01044	0.65	+4.5
1,140,542	-		CCNA_01044	0.66	+0.2
1,140,542	-		CCNA_01044	0.66	-0.7
1,140,542	-		CCNA_01044	0.66	-0.3
1,140,549	-		CCNA_01044	0.67	+0.5
1,140,582	+		CCNA_01044	0.72	-2.0
1,140,590	-		CCNA_01044	0.74	-0.6
1,140,590	-		CCNA_01044	0.74	-1.2
1,140,590	-		CCNA_01044	0.74	-0.0
1,140,590	-		CCNA_01044	0.74	+0.8
1,140,597	-		CCNA_01044	0.75	-1.2
1,140,633	+		CCNA_01044	0.80	-0.4
1,140,680	+		CCNA_01044	0.88	+0.4
1,140,680	+		CCNA_01044	0.88	+0.5
1,140,714	+				+0.4
1,140,741	+				-0.2
1,140,749	-				-1.6
1,140,750	-				+1.9