Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01035

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,125,542	-		CCNA_01034	0.70	-0.9
1,125,542	-		CCNA_01034	0.70	+0.5
1,125,563	-		CCNA_01034	0.70	-0.4
1,125,563	-		CCNA_01034	0.70	+0.8
1,125,568	-		CCNA_01034	0.70	-0.6
1,125,595	+		CCNA_01034	0.71	+0.4
1,125,595	+		CCNA_01034	0.71	+2.5
1,125,603	-		CCNA_01034	0.71	+1.3
1,125,652	+		CCNA_01034	0.73	+2.1
1,125,676	-		CCNA_01034	0.74	-1.0
1,125,720	+		CCNA_01034	0.75	+2.5
1,125,729	-		CCNA_01034	0.75	+1.1
1,125,734	-		CCNA_01034	0.75	-0.2
1,125,749	+		CCNA_01034	0.76	+0.6
1,125,817	+		CCNA_01034	0.78	-1.8
1,125,830	+		CCNA_01034	0.78	-2.0
1,125,830	+		CCNA_01034	0.78	-1.2
1,125,838	-		CCNA_01034	0.79	-0.6
1,125,875	+		CCNA_01034	0.80	-0.2
1,125,875	+		CCNA_01034	0.80	+0.7
1,125,875	+		CCNA_01034	0.80	+0.0
1,125,883	-		CCNA_01034	0.80	+0.5
1,125,883	-		CCNA_01034	0.80	-0.4
1,125,883	-		CCNA_01034	0.80	-1.8
1,125,883	-		CCNA_01034	0.80	-0.6
1,125,883	-		CCNA_01034	0.80	-1.5
1,125,883	-		CCNA_01034	0.80	+1.0
1,125,888	-		CCNA_01034	0.80	-0.5
1,125,913	+		CCNA_01034	0.81	+1.3
1,125,921	-		CCNA_01034	0.81	-0.4
1,125,932	+		CCNA_01034	0.81	-1.5
1,125,937	+		CCNA_01034	0.82	+0.6
1,125,945	+		CCNA_01034	0.82	-0.7
1,125,990	+		CCNA_01034	0.83	-0.3
1,126,024	-		CCNA_01034	0.84	+0.4
1,126,037	+		CCNA_01034	0.85	-2.2
1,126,040	-		CCNA_01034	0.85	-0.9
1,126,042	+		CCNA_01034	0.85	-0.8
1,126,045	-		CCNA_01034	0.85	-2.0
1,126,082	-		CCNA_01034	0.86	-0.5
1,126,122	+		CCNA_01034	0.87	-0.3
1,126,127	+		CCNA_01034	0.87	+0.1
1,126,129	-		CCNA_01034	0.87	-0.1
1,126,207	-		CCNA_01034	0.90	-0.6
1,126,290	-				+0.0
1,126,295	+				-0.3
1,126,295	+				+0.1
1,126,303	-				-0.6
1,126,303	-				+0.1
1,126,308	+				-0.6
1,126,313	+				+0.3
1,126,313	+				-0.8
1,126,350	+				+0.2
1,126,350	+				-0.3
1,126,358	-				-2.3
1,126,358	-				-0.5
1,126,358	-				-0.5
1,126,358	-				+0.5
1,126,404	+				-0.1
1,126,404	+				+1.6
1,126,407	-				-0.8
1,126,412	-				+0.1
1,126,412	-				+3.1
1,126,467	+				-0.5
1,126,534	+				+2.2
1,126,542	-				-0.1
1,126,547	+				+1.3
1,126,551	-				+0.8
1,126,551	-				-0.7
1,126,552	+				+1.3
1,126,555	-				-0.6
1,126,555	-				+0.3
1,126,579	+				+1.8
1,126,579	+				+1.2
1,126,584	+				+0.9
1,126,584	+				-0.1
1,126,592	-				+0.3
1,126,608	-				-1.5
1,126,610	-				+0.8
1,126,614	+				+1.3
1,126,696	+				+1.1
1,126,712	-				-0.5
1,126,826	-		CCNA_01035	0.15	+0.9
1,126,873	+		CCNA_01035	0.18	+2.1
1,126,881	-		CCNA_01035	0.18	-0.1
1,126,926	+		CCNA_01035	0.20	+3.8
1,126,939	-		CCNA_01035	0.21	-0.3
1,126,942	+		CCNA_01035	0.21	-0.2
1,126,992	+		CCNA_01035	0.24	+0.2
1,127,045	+		CCNA_01035	0.27	-0.4
1,127,118	+		CCNA_01035	0.30	+1.3
1,127,137	+		CCNA_01035	0.31	+1.2
1,127,148	+		CCNA_01035	0.32	+0.7
1,127,235	+		CCNA_01035	0.37	+0.8
1,127,243	-		CCNA_01035	0.37	-0.5
1,127,290	+		CCNA_01035	0.40	+1.1
1,127,372	+		CCNA_01035	0.44	+1.5
1,127,377	+		CCNA_01035	0.44	+2.5
1,127,377	+		CCNA_01035	0.44	+1.8
1,127,438	+		CCNA_01035	0.47	+0.7
1,127,438	+		CCNA_01035	0.47	+0.3
1,127,555	+		CCNA_01035	0.54	+1.8
1,127,630	-		CCNA_01035	0.58	+0.0
1,127,642	+		CCNA_01035	0.58	+1.4
1,127,650	-		CCNA_01035	0.59	+1.8
1,127,650	-		CCNA_01035	0.59	-1.4
1,127,650	-		CCNA_01035	0.59	+0.8
1,127,661	-		CCNA_01035	0.59	-0.1
1,127,674	+		CCNA_01035	0.60	+1.6
1,127,692	+		CCNA_01035	0.61	+0.9
1,127,692	+		CCNA_01035	0.61	+2.1
1,127,707	+		CCNA_01035	0.62	+0.8
1,127,747	+		CCNA_01035	0.64	+1.3
1,127,760	+		CCNA_01035	0.64	+1.6
1,127,767	+		CCNA_01035	0.65	+2.1
1,127,767	+		CCNA_01035	0.65	-0.1
1,127,767	+		CCNA_01035	0.65	+2.0
1,127,768	+		CCNA_01035	0.65	+0.6
1,127,775	-		CCNA_01035	0.65	+1.8
1,127,775	-		CCNA_01035	0.65	+0.3
1,127,775	-		CCNA_01035	0.65	-1.0
1,127,843	+		CCNA_01035	0.69	+1.3
1,127,849	+		CCNA_01035	0.69	+1.6
1,127,904	-		CCNA_01035	0.72	-0.7
1,127,906	+		CCNA_01035	0.72	+1.6
1,127,906	+		CCNA_01035	0.72	+1.9
1,127,906	-		CCNA_01035	0.72	+0.9
1,127,908	+		CCNA_01035	0.72	+1.2
1,127,914	+		CCNA_01035	0.73	+1.6
1,127,916	-		CCNA_01035	0.73	+1.0
1,127,924	-		CCNA_01035	0.73	-1.4
1,127,940	+		CCNA_01035	0.74	+1.7
1,127,945	+		CCNA_01035	0.74	+1.1
1,127,951	+		CCNA_01035	0.74	+2.0
1,128,020	+		CCNA_01035	0.78	+2.1
1,128,054	+		CCNA_01035	0.80	-0.0
1,128,054	-		CCNA_01035	0.80	+1.5
1,128,077	+		CCNA_01035	0.81	+2.7
1,128,103	+		CCNA_01035	0.83	+2.1
1,128,103	-				+2.5
1,128,111	-		CCNA_01035	0.83	+2.4
1,128,113	+		CCNA_01035	0.83	+1.0
1,128,167	+		CCNA_01035	0.86	+2.8
1,128,212	+		CCNA_01035	0.88	+2.6
1,128,222	+		CCNA_01035	0.89	+2.6
1,128,252	+				+3.0
1,128,277	+				+3.1
1,128,319	+				+3.1
1,128,436	-				-0.3
1,128,551	+				+1.7
1,128,556	+				+0.7
1,128,717	+				+0.3
1,128,729	+				+0.4
1,128,729	+				+0.1
1,128,735	-				+0.7
1,128,743	+				-1.0
1,128,743	+				-1.5
1,128,816	-				-1.0
1,128,845	+				-0.4
1,128,853	-				+1.3
1,128,853	-				-1.0
1,128,894	-				+0.0
1,128,894	-				+0.1
1,128,903	+				-2.3
1,128,913	+				+0.3
1,128,929	+				-0.0
1,128,931	+				-1.1
1,128,944	-				+0.2
1,128,944	-				-0.3
1,128,944	-				+0.9
1,128,944	-				+0.4
1,128,958	+				-0.7
1,128,962	+				-0.5
1,128,981	-				+0.1
1,129,145	-				+0.0
1,129,166	+				-1.5
1,129,174	-				-0.2
1,129,201	+				+0.3
1,129,209	-				+0.5
1,129,209	-				+0.8
1,129,221	+				+0.5
1,129,233	+				+1.1
1,129,233	+				-0.6
1,129,233	+				-1.3
1,129,245	+				+1.1
1,129,257	+				+1.6
1,129,265	-				+0.8
1,129,265	-				+1.3
1,129,265	-				+0.7
1,129,265	-				+1.1
1,129,276	+				+0.1
1,129,276	+				-0.0
1,129,284	-				+0.4
1,129,301	+				-1.8
1,129,326	-				+2.3
1,129,352	-				+0.7
1,129,369	+				-0.4
1,129,369	+				+0.4
1,129,387	-				-0.3
1,129,397	+				+0.7