Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01026

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,111,788	+		CCNA_01024	0.35	+0.4
1,111,791	-		CCNA_01024	0.35	+1.3
1,111,791	-		CCNA_01024	0.35	+0.8
1,111,791	-		CCNA_01024	0.35	+0.9
1,111,791	-		CCNA_01024	0.35	+0.7
1,111,837	+		CCNA_01024	0.44	+0.0
1,111,844	+		CCNA_01024	0.46	-0.3
1,111,845	-		CCNA_01024	0.46	+1.6
1,111,847	-		CCNA_01024	0.46	+1.0
1,111,849	+		CCNA_01024	0.47	-0.3
1,111,857	-		CCNA_01024	0.48	+1.4
1,111,857	-		CCNA_01024	0.48	+1.0
1,111,857	-		CCNA_01024	0.48	+1.9
1,111,876	-		CCNA_01024	0.52	+1.8
1,111,881	-		CCNA_01024	0.53	+2.2
1,111,881	-		CCNA_01024	0.53	+1.3
1,111,881	-		CCNA_01024	0.53	+1.1
1,111,881	-		CCNA_01024	0.53	+1.9
1,111,881	-		CCNA_01024	0.53	+1.3
1,111,881	-		CCNA_01024	0.53	+1.1
1,111,915	+		CCNA_01024	0.60	-0.7
1,111,916	+		CCNA_01024	0.60	+0.4
1,111,921	-		CCNA_01024	0.61	+0.9
1,111,923	-		CCNA_01024	0.62	+0.2
1,111,931	-		CCNA_01024	0.63	+1.8
1,111,963	+		CCNA_01024	0.70	+0.8
1,111,963	+		CCNA_01024	0.70	+1.5
1,111,971	-		CCNA_01024	0.72	+2.2
1,111,971	-		CCNA_01024	0.72	+1.8
1,111,971	-		CCNA_01024	0.72	+1.7
1,111,971	-		CCNA_01024	0.72	+1.5
1,111,971	-		CCNA_01024	0.72	+2.4
1,111,971	-		CCNA_01024	0.72	+1.5
1,111,971	-		CCNA_01024	0.72	+2.2
1,112,028	+		CCNA_01024	0.83	+0.8
1,112,036	-		CCNA_01024	0.85	+2.2
1,112,036	-		CCNA_01024	0.85	+1.7
1,112,036	-		CCNA_01024	0.85	+1.6
1,112,036	-		CCNA_01024	0.85	+2.2
1,112,036	-		CCNA_01024	0.85	+1.7
1,112,056	-		CCNA_01024	0.89	+1.9
1,112,103	+				+0.8
1,112,106	-				+2.8
1,112,109	-				+3.8
1,112,202	-		CCNA_01025	0.12	+2.7
1,112,257	-		CCNA_01025	0.21	+1.9
1,112,317	-		CCNA_01025	0.31	+2.7
1,112,346	+		CCNA_01025	0.36	+1.1
1,112,355	-		CCNA_01025	0.37	+2.7
1,112,377	+		CCNA_01025	0.41	+1.5
1,112,385	-		CCNA_01025	0.42	+1.2
1,112,385	-		CCNA_01025	0.42	+3.1
1,112,385	-		CCNA_01025	0.42	+2.5
1,112,389	+		CCNA_01025	0.42	-0.8
1,112,389	+		CCNA_01025	0.42	-0.8
1,112,397	-		CCNA_01025	0.44	+1.8
1,112,397	-		CCNA_01025	0.44	+2.6
1,112,397	-		CCNA_01025	0.44	+3.0
1,112,404	+		CCNA_01025	0.45	-0.7
1,112,407	-		CCNA_01025	0.45	+1.8
1,112,437	-		CCNA_01025	0.50	+1.4
1,112,461	-		CCNA_01025	0.54	+1.6
1,112,500	+		CCNA_01025	0.60	+1.9
1,112,504	-		CCNA_01025	0.61	+1.9
1,112,508	-		CCNA_01025	0.62	+2.4
1,112,515	+		CCNA_01025	0.63	+0.0
1,112,517	+		CCNA_01025	0.63	-0.2
1,112,662	+		CCNA_01025	0.86	+0.9
1,112,675	-		CCNA_01025	0.88	+1.6
1,112,675	-		CCNA_01025	0.88	+2.3
1,112,675	-		CCNA_01025	0.88	+0.3
1,112,675	-		CCNA_01025	0.88	+2.8
1,112,675	-		CCNA_01025	0.88	+2.9
1,112,675	-		CCNA_01025	0.88	+1.6
1,112,675	-		CCNA_01025	0.88	+2.3
1,112,677	-		CCNA_01025	0.89	+2.2
1,112,677	-		CCNA_01025	0.89	+1.6
1,112,688	-				+2.5
1,112,700	-				+2.6
1,112,724	-				+2.0
1,112,784	+				-0.4
1,112,792	-				+1.8
1,112,818	+		CCNA_01026	0.12	-2.1
1,112,826	-		CCNA_01026	0.13	+3.4
1,112,875	+		CCNA_01026	0.20	-0.9
1,112,883	+		CCNA_01026	0.21	-0.6
1,112,883	-		CCNA_01026	0.21	+2.3
1,112,970	-		CCNA_01026	0.33	+2.0
1,112,975	-		CCNA_01026	0.34	+0.6
1,112,975	-		CCNA_01026	0.34	+0.5
1,112,997	-		CCNA_01026	0.37	+0.2
1,113,033	+		CCNA_01026	0.42	-0.5
1,113,042	-		CCNA_01026	0.43	+1.5
1,113,042	-		CCNA_01026	0.43	+1.8
1,113,042	-		CCNA_01026	0.43	+0.6
1,113,091	+		CCNA_01026	0.50	-0.9
1,113,091	+		CCNA_01026	0.50	-0.5
1,113,092	-		CCNA_01026	0.50	+2.1
1,113,096	+		CCNA_01026	0.51	+1.4
1,113,099	-		CCNA_01026	0.51	+0.5
1,113,101	+		CCNA_01026	0.51	-1.4
1,113,133	+		CCNA_01026	0.56	-0.7
1,113,133	+		CCNA_01026	0.56	+0.1
1,113,141	-		CCNA_01026	0.57	-0.2
1,113,143	-		CCNA_01026	0.57	+0.1
1,113,146	+		CCNA_01026	0.58	+0.8
1,113,154	-		CCNA_01026	0.59	+1.2
1,113,154	-		CCNA_01026	0.59	+1.6
1,113,156	+		CCNA_01026	0.59	+0.3
1,113,157	+		CCNA_01026	0.59	-1.7
1,113,180	+		CCNA_01026	0.62	-2.3
1,113,193	+		CCNA_01026	0.64	-0.6
1,113,200	+		CCNA_01026	0.65	-1.1
1,113,240	+		CCNA_01026	0.71	+0.3
1,113,251	+		CCNA_01026	0.72	+1.8
1,113,253	-		CCNA_01026	0.72	+1.9
1,113,253	-		CCNA_01026	0.72	-0.2
1,113,253	-		CCNA_01026	0.72	+0.3
1,113,283	+		CCNA_01026	0.77	-0.6
1,113,334	-		CCNA_01026	0.84	-0.5
1,113,359	-		CCNA_01026	0.87	+0.1
1,113,396	+				+0.0
1,113,407	+				-1.0
1,113,417	+				-0.6
1,113,480	+				-1.4
1,113,503	+				-0.6
1,113,510	+				+0.2
1,113,511	-				-1.1
1,113,518	-				-0.7
1,113,518	-				-0.9
1,113,538	-				+2.4
1,113,558	+				+1.1
1,113,572	+				-0.6
1,113,576	-				-0.6
1,113,580	-				+1.5
1,113,584	+				-1.9
1,113,598	+				-0.7
1,113,606	+				-1.0
1,113,606	+				-0.7
1,113,683	+				+1.2
1,113,689	+		CCNA_01027	0.11	+0.8
1,113,689	+		CCNA_01027	0.11	-0.1
1,113,701	+		CCNA_01027	0.14	+0.2
1,113,701	+		CCNA_01027	0.14	+0.7
1,113,701	+				+1.8
1,113,701	+		CCNA_01027	0.14	+2.8
1,113,701	+		CCNA_01027	0.14	+0.7
1,113,701	+		CCNA_01027	0.14	-0.7
1,113,711	+		CCNA_01027	0.17	-0.1
1,113,720	-		CCNA_01027	0.20	+1.5
1,113,751	+		CCNA_01027	0.28	-0.7
1,113,763	+				+4.1
1,113,770	-		CCNA_01027	0.33	-1.2
1,113,776	-		CCNA_01027	0.35	+0.0
1,113,792	+		CCNA_01027	0.39	+0.0
1,113,828	+		CCNA_01027	0.49	+0.5
1,113,848	+		CCNA_01027	0.55	+1.0
1,113,856	-		CCNA_01027	0.57	+1.9
1,113,871	-		CCNA_01027	0.61	-0.1
1,113,899	+		CCNA_01027	0.69	+0.2
1,113,907	+		CCNA_01027	0.71	+0.2
1,113,907	+		CCNA_01027	0.71	+0.9
1,113,927	-		CCNA_01027	0.76	-1.4
1,113,927	-		CCNA_01027	0.76	+0.4
1,113,937	-		CCNA_01027	0.79	-1.2
1,113,958	-		CCNA_01027	0.85	-0.9
1,113,958	-		CCNA_01027	0.85	+0.1
1,113,981	+				+0.9
1,113,981	+				-1.9
1,113,981	+				-0.1
1,113,988	+				+2.5
1,113,989	-				-2.2
1,114,019	+				+0.3
1,114,019	+				+0.2
1,114,029	-				-0.8
1,114,070	+				-0.6
1,114,083	-				-1.2
1,114,115	+				-0.4
1,114,115	+				+0.3
1,114,115	+				-1.4
1,114,120	+				-1.2
1,114,121	+				+0.0
1,114,123	-				-1.7
1,114,123	-				+0.5
1,114,184	+				-0.7
1,114,187	+				-2.2
1,114,200	-		CCNA_01028	0.10	-0.6
1,114,208	+		CCNA_01028	0.11	-0.2
1,114,218	+		CCNA_01028	0.12	+0.3
1,114,243	+		CCNA_01028	0.13	+0.9
1,114,253	+		CCNA_01028	0.14	-0.6
1,114,253	+		CCNA_01028	0.14	-0.8
1,114,253	+		CCNA_01028	0.14	-1.4
1,114,253	+		CCNA_01028	0.14	+1.0
1,114,253	+		CCNA_01028	0.14	+0.8
1,114,253	+		CCNA_01028	0.14	+0.5
1,114,253	+		CCNA_01028	0.14	-0.9
1,114,253	+		CCNA_01028	0.14	-1.1
1,114,253	+		CCNA_01028	0.14	+0.1
1,114,254	-		CCNA_01028	0.14	-0.3
1,114,261	-		CCNA_01028	0.14	+2.1
1,114,261	-		CCNA_01028	0.14	-1.2
1,114,261	-		CCNA_01028	0.14	-0.4
1,114,261	-		CCNA_01028	0.14	-0.4
1,114,261	-		CCNA_01028	0.14	+0.7
1,114,261	-		CCNA_01028	0.14	-0.9
1,114,261	-		CCNA_01028	0.14	+0.4
1,114,261	-		CCNA_01028	0.14	+0.2
1,114,261	-		CCNA_01028	0.14	-2.4
1,114,261	-		CCNA_01028	0.14	+1.5
1,114,263	+		CCNA_01028	0.14	-0.5
1,114,322	+		CCNA_01028	0.18	-0.7
1,114,329	+		CCNA_01028	0.18	-0.8
1,114,337	-		CCNA_01028	0.19	+0.7
1,114,337	-		CCNA_01028	0.19	+1.5
1,114,337	-		CCNA_01028	0.19	-0.2
1,114,344	+		CCNA_01028	0.19	+0.3
1,114,344	+		CCNA_01028	0.19	-0.3
1,114,344	+		CCNA_01028	0.19	+0.9
1,114,352	+		CCNA_01028	0.20	-0.1
1,114,352	-		CCNA_01028	0.20	+0.2
1,114,352	-		CCNA_01028	0.20	+1.1
1,114,352	-		CCNA_01028	0.20	+2.1
1,114,360	-		CCNA_01028	0.20	+1.3
1,114,370	-		CCNA_01028	0.21	-2.9
1,114,371	+		CCNA_01028	0.21	+0.9
1,114,403	+		CCNA_01028	0.23	-1.3
1,114,418	+		CCNA_01028	0.24	-0.5
1,114,441	-		CCNA_01028	0.25	-1.2