Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01018

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01017 and CCNA_01018 are separated by 126 nucleotidesCCNA_01018 and CCNA_01019 are separated by 170 nucleotides CCNA_01017: CCNA_01017 - acyl-CoA synthetase, at 1,098,179 to 1,099,771 _01017 CCNA_01018: CCNA_01018 - D-galactose 1-dehydrogenase, at 1,099,898 to 1,100,821 _01018 CCNA_01019: CCNA_01019 - Beta-glucosidase (EC 3.2.1.21) (from data), at 1,100,992 to 1,103,268 _01019 Position (kb) 1099 1100 1101Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1098.915 kb on + strand, within CCNA_01017at 1098.915 kb on + strand, within CCNA_01017at 1098.915 kb on + strand, within CCNA_01017at 1098.923 kb on - strand, within CCNA_01017at 1098.932 kb on + strand, within CCNA_01017at 1098.940 kb on - strand, within CCNA_01017at 1098.940 kb on - strand, within CCNA_01017at 1099.012 kb on - strandat 1099.017 kb on - strand, within CCNA_01017at 1099.032 kb on + strand, within CCNA_01017at 1099.040 kb on - strand, within CCNA_01017at 1099.044 kb on + strand, within CCNA_01017at 1099.052 kb on - strand, within CCNA_01017at 1099.073 kb on + strand, within CCNA_01017at 1099.095 kb on + strand, within CCNA_01017at 1099.095 kb on + strand, within CCNA_01017at 1099.095 kb on + strand, within CCNA_01017at 1099.103 kb on - strand, within CCNA_01017at 1099.111 kb on - strand, within CCNA_01017at 1099.165 kb on - strand, within CCNA_01017at 1099.233 kb on + strand, within CCNA_01017at 1099.284 kb on - strand, within CCNA_01017at 1099.306 kb on + strand, within CCNA_01017at 1099.306 kb on + strand, within CCNA_01017at 1099.306 kb on + strand, within CCNA_01017at 1099.339 kb on + strand, within CCNA_01017at 1099.401 kb on + strand, within CCNA_01017at 1099.427 kb on + strand, within CCNA_01017at 1099.435 kb on - strand, within CCNA_01017at 1099.447 kb on - strand, within CCNA_01017at 1099.471 kb on + strand, within CCNA_01017at 1099.471 kb on + strand, within CCNA_01017at 1099.479 kb on - strand, within CCNA_01017at 1099.486 kb on + strand, within CCNA_01017at 1099.486 kb on + strand, within CCNA_01017at 1099.492 kb on - strand, within CCNA_01017at 1099.518 kb on + strand, within CCNA_01017at 1099.567 kb on + strand, within CCNA_01017at 1099.651 kb on + strandat 1099.659 kb on - strandat 1099.659 kb on - strandat 1099.659 kb on - strandat 1099.660 kb on + strandat 1099.660 kb on + strandat 1099.685 kb on + strandat 1099.746 kb on - strandat 1099.746 kb on - strandat 1099.746 kb on - strandat 1099.748 kb on - strandat 1099.757 kb on + strandat 1099.794 kb on - strandat 1099.806 kb on + strandat 1099.837 kb on + strandat 1099.866 kb on - strandat 1099.888 kb on - strandat 1099.910 kb on + strandat 1099.912 kb on + strandat 1099.912 kb on + strandat 1099.920 kb on - strandat 1099.920 kb on - strandat 1099.920 kb on - strandat 1099.920 kb on - strandat 1099.920 kb on - strandat 1099.920 kb on - strandat 1099.925 kb on - strandat 1100.015 kb on + strand, within CCNA_01018at 1100.082 kb on + strand, within CCNA_01018at 1100.090 kb on - strand, within CCNA_01018at 1100.090 kb on - strand, within CCNA_01018at 1100.116 kb on - strand, within CCNA_01018at 1100.117 kb on + strand, within CCNA_01018at 1100.117 kb on + strand, within CCNA_01018at 1100.139 kb on - strand, within CCNA_01018at 1100.139 kb on - strand, within CCNA_01018at 1100.189 kb on + strand, within CCNA_01018at 1100.194 kb on + strandat 1100.197 kb on - strand, within CCNA_01018at 1100.197 kb on - strand, within CCNA_01018at 1100.198 kb on + strand, within CCNA_01018at 1100.202 kb on - strand, within CCNA_01018at 1100.207 kb on - strand, within CCNA_01018at 1100.211 kb on + strand, within CCNA_01018at 1100.252 kb on - strand, within CCNA_01018at 1100.294 kb on - strand, within CCNA_01018at 1100.313 kb on - strand, within CCNA_01018at 1100.320 kb on + strand, within CCNA_01018at 1100.351 kb on + strand, within CCNA_01018at 1100.352 kb on + strand, within CCNA_01018at 1100.352 kb on + strand, within CCNA_01018at 1100.360 kb on - strand, within CCNA_01018at 1100.360 kb on - strand, within CCNA_01018at 1100.384 kb on - strand, within CCNA_01018at 1100.393 kb on - strand, within CCNA_01018at 1100.438 kb on - strand, within CCNA_01018at 1100.441 kb on + strand, within CCNA_01018at 1100.444 kb on - strand, within CCNA_01018at 1100.449 kb on - strand, within CCNA_01018at 1100.449 kb on - strand, within CCNA_01018at 1100.496 kb on - strand, within CCNA_01018at 1100.496 kb on - strand, within CCNA_01018at 1100.498 kb on - strand, within CCNA_01018at 1100.632 kb on - strand, within CCNA_01018at 1100.642 kb on + strand, within CCNA_01018at 1100.712 kb on - strand, within CCNA_01018at 1100.722 kb on - strand, within CCNA_01018at 1100.751 kb on + strandat 1100.759 kb on - strandat 1100.795 kb on - strandat 1100.833 kb on + strandat 1100.836 kb on - strandat 1100.891 kb on - strandat 1100.891 kb on - strandat 1100.891 kb on - strandat 1100.930 kb on + strandat 1100.936 kb on - strandat 1100.938 kb on - strandat 1100.946 kb on - strandat 1100.983 kb on - strandat 1100.987 kb on + strandat 1101.014 kb on + strandat 1101.027 kb on - strandat 1101.032 kb on + strandat 1101.045 kb on - strandat 1101.045 kb on - strandat 1101.047 kb on + strandat 1101.067 kb on - strandat 1101.078 kb on + strandat 1101.081 kb on - strandat 1101.086 kb on - strandat 1101.086 kb on - strandat 1101.120 kb on - strandat 1101.120 kb on - strandat 1101.120 kb on - strandat 1101.120 kb on - strandat 1101.169 kb on + strandat 1101.188 kb on - strandat 1101.236 kb on - strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.254 kb on + strand, within CCNA_01019at 1101.262 kb on - strand, within CCNA_01019at 1101.262 kb on - strand, within CCNA_01019at 1101.262 kb on - strand, within CCNA_01019at 1101.262 kb on - strand, within CCNA_01019at 1101.262 kb on - strand, within CCNA_01019at 1101.262 kb on - strand, within CCNA_01019at 1101.262 kb on - strand, within CCNA_01019at 1101.262 kb on - strand, within CCNA_01019at 1101.262 kb on - strand, within CCNA_01019at 1101.271 kb on + strand, within CCNA_01019at 1101.296 kb on + strand, within CCNA_01019at 1101.303 kb on + strand, within CCNA_01019at 1101.348 kb on + strand, within CCNA_01019at 1101.348 kb on - strand, within CCNA_01019at 1101.353 kb on + strand, within CCNA_01019at 1101.368 kb on + strand, within CCNA_01019at 1101.368 kb on + strand, within CCNA_01019at 1101.368 kb on + strand, within CCNA_01019at 1101.373 kb on + strand, within CCNA_01019at 1101.374 kb on - strand, within CCNA_01019at 1101.376 kb on - strand, within CCNA_01019at 1101.376 kb on - strand, within CCNA_01019at 1101.376 kb on - strand, within CCNA_01019at 1101.376 kb on - strand, within CCNA_01019at 1101.376 kb on - strand, within CCNA_01019at 1101.376 kb on - strand, within CCNA_01019at 1101.378 kb on + strand, within CCNA_01019at 1101.381 kb on - strand, within CCNA_01019at 1101.381 kb on - strand, within CCNA_01019at 1101.393 kb on - strand, within CCNA_01019at 1101.415 kb on - strand, within CCNA_01019at 1101.427 kb on + strand, within CCNA_01019at 1101.497 kb on - strand, within CCNA_01019at 1101.497 kb on - strand, within CCNA_01019at 1101.512 kb on - strand, within CCNA_01019at 1101.538 kb on - strand, within CCNA_01019at 1101.577 kb on + strand, within CCNA_01019at 1101.577 kb on + strand, within CCNA_01019at 1101.582 kb on + strand, within CCNA_01019at 1101.585 kb on - strand, within CCNA_01019at 1101.585 kb on - strand, within CCNA_01019at 1101.590 kb on - strand, within CCNA_01019at 1101.590 kb on - strand, within CCNA_01019at 1101.597 kb on - strand, within CCNA_01019at 1101.638 kb on + strand, within CCNA_01019at 1101.646 kb on - strand, within CCNA_01019at 1101.656 kb on - strand, within CCNA_01019at 1101.672 kb on - strand, within CCNA_01019at 1101.717 kb on - strand, within CCNA_01019at 1101.718 kb on - strand, within CCNA_01019at 1101.736 kb on + strand, within CCNA_01019at 1101.736 kb on - strand, within CCNA_01019at 1101.753 kb on + strand, within CCNA_01019at 1101.753 kb on + strand, within CCNA_01019at 1101.754 kb on + strand, within CCNA_01019at 1101.762 kb on - strand, within CCNA_01019at 1101.762 kb on - strand, within CCNA_01019at 1101.797 kb on + strand, within CCNA_01019at 1101.797 kb on + strand, within CCNA_01019at 1101.797 kb on + strand, within CCNA_01019at 1101.797 kb on + strand, within CCNA_01019at 1101.797 kb on + strand, within CCNA_01019at 1101.797 kb on + strand, within CCNA_01019at 1101.797 kb on + strand, within CCNA_01019at 1101.797 kb on + strand, within CCNA_01019at 1101.797 kb on + strand, within CCNA_01019at 1101.805 kb on - strand, within CCNA_01019at 1101.805 kb on - strand, within CCNA_01019at 1101.810 kb on - strand, within CCNA_01019

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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1,098,915 + CCNA_01017 0.46 +0.6
1,098,915 + CCNA_01017 0.46 -0.2
1,098,915 + CCNA_01017 0.46 -2.3
1,098,923 - CCNA_01017 0.47 -0.3
1,098,932 + CCNA_01017 0.47 -2.0
1,098,940 - CCNA_01017 0.48 +0.2
1,098,940 - CCNA_01017 0.48 -0.0
1,099,012 - +2.1
1,099,017 - CCNA_01017 0.53 +0.4
1,099,032 + CCNA_01017 0.54 +1.2
1,099,040 - CCNA_01017 0.54 -1.5
1,099,044 + CCNA_01017 0.54 -0.7
1,099,052 - CCNA_01017 0.55 +1.1
1,099,073 + CCNA_01017 0.56 -0.4
1,099,095 + CCNA_01017 0.58 -1.7
1,099,095 + CCNA_01017 0.58 -1.1
1,099,095 + CCNA_01017 0.58 +2.6
1,099,103 - CCNA_01017 0.58 -0.9
1,099,111 - CCNA_01017 0.59 -1.1
1,099,165 - CCNA_01017 0.62 +0.8
1,099,233 + CCNA_01017 0.66 -0.1
1,099,284 - CCNA_01017 0.69 -0.4
1,099,306 + CCNA_01017 0.71 +1.6
1,099,306 + CCNA_01017 0.71 +1.4
1,099,306 + CCNA_01017 0.71 -1.0
1,099,339 + CCNA_01017 0.73 -1.3
1,099,401 + CCNA_01017 0.77 +0.2
1,099,427 + CCNA_01017 0.78 -1.1
1,099,435 - CCNA_01017 0.79 -2.1
1,099,447 - CCNA_01017 0.80 +1.3
1,099,471 + CCNA_01017 0.81 +1.6
1,099,471 + CCNA_01017 0.81 +1.8
1,099,479 - CCNA_01017 0.82 +0.4
1,099,486 + CCNA_01017 0.82 +1.1
1,099,486 + CCNA_01017 0.82 -0.7
1,099,492 - CCNA_01017 0.82 -1.6
1,099,518 + CCNA_01017 0.84 -1.3
1,099,567 + CCNA_01017 0.87 -1.2
1,099,651 + +0.1
1,099,659 - +0.6
1,099,659 - +0.1
1,099,659 - -0.2
1,099,660 + -0.5
1,099,660 + +1.4
1,099,685 + +1.3
1,099,746 - +1.3
1,099,746 - -1.3
1,099,746 - -0.3
1,099,748 - +0.1
1,099,757 + -1.5
1,099,794 - +0.0
1,099,806 + -1.0
1,099,837 + -0.6
1,099,866 - +1.7
1,099,888 - +0.5
1,099,910 + -0.1
1,099,912 + +1.3
1,099,912 + +0.0
1,099,920 - +0.6
1,099,920 - +1.4
1,099,920 - +1.0
1,099,920 - +0.1
1,099,920 - +1.0
1,099,920 - +1.8
1,099,925 - +1.1
1,100,015 + CCNA_01018 0.13 +0.7
1,100,082 + CCNA_01018 0.20 -0.4
1,100,090 - CCNA_01018 0.21 +1.3
1,100,090 - CCNA_01018 0.21 +0.5
1,100,116 - CCNA_01018 0.24 +0.1
1,100,117 + CCNA_01018 0.24 +1.3
1,100,117 + CCNA_01018 0.24 -1.4
1,100,139 - CCNA_01018 0.26 -0.8
1,100,139 - CCNA_01018 0.26 -1.7
1,100,189 + CCNA_01018 0.31 -1.4
1,100,194 + +2.5
1,100,197 - CCNA_01018 0.32 -1.5
1,100,197 - CCNA_01018 0.32 -0.2
1,100,198 + CCNA_01018 0.32 -2.2
1,100,202 - CCNA_01018 0.33 -0.3
1,100,207 - CCNA_01018 0.33 +0.8
1,100,211 + CCNA_01018 0.34 +0.4
1,100,252 - CCNA_01018 0.38 +1.5
1,100,294 - CCNA_01018 0.43 -0.0
1,100,313 - CCNA_01018 0.45 +2.4
1,100,320 + CCNA_01018 0.46 -0.2
1,100,351 + CCNA_01018 0.49 +3.1
1,100,352 + CCNA_01018 0.49 +3.3
1,100,352 + CCNA_01018 0.49 +1.8
1,100,360 - CCNA_01018 0.50 +0.4
1,100,360 - CCNA_01018 0.50 +1.8
1,100,384 - CCNA_01018 0.53 -0.9
1,100,393 - CCNA_01018 0.54 -0.1
1,100,438 - CCNA_01018 0.58 +0.4
1,100,441 + CCNA_01018 0.59 +1.3
1,100,444 - CCNA_01018 0.59 -0.4
1,100,449 - CCNA_01018 0.60 +0.1
1,100,449 - CCNA_01018 0.60 +0.7
1,100,496 - CCNA_01018 0.65 -1.2
1,100,496 - CCNA_01018 0.65 -0.2
1,100,498 - CCNA_01018 0.65 +0.5
1,100,632 - CCNA_01018 0.79 -1.6
1,100,642 + CCNA_01018 0.81 +0.2
1,100,712 - CCNA_01018 0.88 -1.1
1,100,722 - CCNA_01018 0.89 -0.1
1,100,751 + +3.4
1,100,759 - -0.4
1,100,795 - +1.5
1,100,833 + +3.0
1,100,836 - +0.1
1,100,891 - +1.1
1,100,891 - +0.1
1,100,891 - +0.1
1,100,930 + -0.6
1,100,936 - +0.4
1,100,938 - +1.1
1,100,946 - +0.5
1,100,983 - -0.5
1,100,987 + -0.7
1,101,014 + +1.3
1,101,027 - +1.2
1,101,032 + -0.4
1,101,045 - -0.6
1,101,045 - +0.7
1,101,047 + -0.6
1,101,067 - +0.1
1,101,078 + +1.0
1,101,081 - +1.1
1,101,086 - -0.3
1,101,086 - +0.9
1,101,120 - +1.1
1,101,120 - -1.3
1,101,120 - +0.3
1,101,120 - +1.9
1,101,169 + -0.6
1,101,188 - +0.3
1,101,236 - CCNA_01019 0.11 -0.5
1,101,254 + CCNA_01019 0.12 -0.8
1,101,254 + CCNA_01019 0.12 -1.6
1,101,254 + CCNA_01019 0.12 -3.1
1,101,254 + CCNA_01019 0.12 +2.1
1,101,254 + CCNA_01019 0.12 -1.4
1,101,254 + CCNA_01019 0.12 +2.1
1,101,254 + CCNA_01019 0.12 +2.0
1,101,254 + CCNA_01019 0.12 -1.1
1,101,254 + CCNA_01019 0.12 -1.8
1,101,254 + CCNA_01019 0.12 -1.0
1,101,254 + CCNA_01019 0.12 +0.2
1,101,254 + CCNA_01019 0.12 +1.0
1,101,254 + CCNA_01019 0.12 +0.7
1,101,254 + CCNA_01019 0.12 +1.9
1,101,254 + CCNA_01019 0.12 -0.4
1,101,262 - CCNA_01019 0.12 -0.1
1,101,262 - CCNA_01019 0.12 -0.8
1,101,262 - CCNA_01019 0.12 +0.5
1,101,262 - CCNA_01019 0.12 -1.1
1,101,262 - CCNA_01019 0.12 -0.6
1,101,262 - CCNA_01019 0.12 -0.2
1,101,262 - CCNA_01019 0.12 -1.2
1,101,262 - CCNA_01019 0.12 +2.0
1,101,262 - CCNA_01019 0.12 +0.0
1,101,271 + CCNA_01019 0.12 +0.2
1,101,296 + CCNA_01019 0.13 +1.0
1,101,303 + CCNA_01019 0.14 +5.3
1,101,348 + CCNA_01019 0.16 +3.5
1,101,348 - CCNA_01019 0.16 -0.7
1,101,353 + CCNA_01019 0.16 -1.5
1,101,368 + CCNA_01019 0.17 +0.1
1,101,368 + CCNA_01019 0.17 +0.5
1,101,368 + CCNA_01019 0.17 +2.1
1,101,373 + CCNA_01019 0.17 +0.5
1,101,374 - CCNA_01019 0.17 -1.3
1,101,376 - CCNA_01019 0.17 +1.7
1,101,376 - CCNA_01019 0.17 -1.8
1,101,376 - CCNA_01019 0.17 -1.3
1,101,376 - CCNA_01019 0.17 -1.3
1,101,376 - CCNA_01019 0.17 +1.3
1,101,376 - CCNA_01019 0.17 -0.5
1,101,378 + CCNA_01019 0.17 +0.4
1,101,381 - CCNA_01019 0.17 -0.7
1,101,381 - CCNA_01019 0.17 -1.2
1,101,393 - CCNA_01019 0.18 -1.6
1,101,415 - CCNA_01019 0.19 +0.8
1,101,427 + CCNA_01019 0.19 -0.3
1,101,497 - CCNA_01019 0.22 +1.7
1,101,497 - CCNA_01019 0.22 +1.3
1,101,512 - CCNA_01019 0.23 +0.8
1,101,538 - CCNA_01019 0.24 -0.4
1,101,577 + CCNA_01019 0.26 -1.2
1,101,577 + CCNA_01019 0.26 -1.0
1,101,582 + CCNA_01019 0.26 -0.3
1,101,585 - CCNA_01019 0.26 -1.0
1,101,585 - CCNA_01019 0.26 +0.3
1,101,590 - CCNA_01019 0.26 +3.1
1,101,590 - CCNA_01019 0.26 +0.0
1,101,597 - CCNA_01019 0.27 +0.8
1,101,638 + CCNA_01019 0.28 +0.7
1,101,646 - CCNA_01019 0.29 +1.7
1,101,656 - CCNA_01019 0.29 -1.8
1,101,672 - CCNA_01019 0.30 +1.1
1,101,717 - CCNA_01019 0.32 +1.1
1,101,718 - CCNA_01019 0.32 +0.0
1,101,736 + CCNA_01019 0.33 -1.7
1,101,736 - CCNA_01019 0.33 +0.9
1,101,753 + CCNA_01019 0.33 -0.5
1,101,753 + CCNA_01019 0.33 +0.4
1,101,754 + CCNA_01019 0.33 +0.3
1,101,762 - CCNA_01019 0.34 -1.3
1,101,762 - CCNA_01019 0.34 -1.3
1,101,797 + CCNA_01019 0.35 -0.0
1,101,797 + CCNA_01019 0.35 +1.7
1,101,797 + CCNA_01019 0.35 -1.4
1,101,797 + CCNA_01019 0.35 +0.0
1,101,797 + CCNA_01019 0.35 -0.1
1,101,797 + CCNA_01019 0.35 -0.0
1,101,797 + CCNA_01019 0.35 +0.2
1,101,797 + CCNA_01019 0.35 +0.3
1,101,797 + CCNA_01019 0.35 +0.2
1,101,805 - CCNA_01019 0.36 +1.0
1,101,805 - CCNA_01019 0.36 -0.5
1,101,810 - CCNA_01019 0.36 -0.7

Or see this region's nucleotide sequence