Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01009

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,087,632	-		CCNA_01008	0.50	+3.4
1,087,649	-		CCNA_01008	0.51	+3.4
1,087,653	+		CCNA_01008	0.51	-0.5
1,087,676	+		CCNA_01008	0.53	+0.7
1,087,679	-		CCNA_01008	0.53	+4.0
1,087,684	-		CCNA_01008	0.53	+3.5
1,087,718	-		CCNA_01008	0.55	+3.3
1,087,718	-		CCNA_01008	0.55	+3.7
1,087,751	-		CCNA_01008	0.57	+3.2
1,087,799	+		CCNA_01008	0.60	-1.1
1,087,807	-		CCNA_01008	0.60	+4.0
1,087,807	-		CCNA_01008	0.60	+3.7
1,087,807	-		CCNA_01008	0.60	+3.6
1,087,807	-		CCNA_01008	0.60	+3.3
1,087,809	+		CCNA_01008	0.61	+1.6
1,087,816	-		CCNA_01008	0.61	+3.8
1,087,832	+		CCNA_01008	0.62	+0.1
1,087,847	+		CCNA_01008	0.63	+0.4
1,087,927	+		CCNA_01008	0.68	+0.2
1,087,999	-		CCNA_01008	0.72	+3.9
1,088,017	+		CCNA_01008	0.73	+0.4
1,088,023	-		CCNA_01008	0.73	+3.6
1,088,025	-		CCNA_01008	0.74	+3.4
1,088,028	-		CCNA_01008	0.74	+3.3
1,088,028	-		CCNA_01008	0.74	+3.3
1,088,035	-		CCNA_01008	0.74	+3.5
1,088,090	+		CCNA_01008	0.77	-1.1
1,088,103	+		CCNA_01008	0.78	+0.8
1,088,111	-		CCNA_01008	0.79	+3.8
1,088,122	+		CCNA_01008	0.79	+1.8
1,088,122	+		CCNA_01008	0.79	+0.3
1,088,130	-		CCNA_01008	0.80	+3.3
1,088,130	-		CCNA_01008	0.80	+3.1
1,088,133	+		CCNA_01008	0.80	-1.1
1,088,135	-		CCNA_01008	0.80	+2.8
1,088,136	-		CCNA_01008	0.80	+3.8
1,088,141	-		CCNA_01008	0.81	+4.2
1,088,148	+		CCNA_01008	0.81	-0.4
1,088,148	+		CCNA_01008	0.81	-0.3
1,088,156	-		CCNA_01008	0.81	+4.8
1,088,156	-		CCNA_01008	0.81	+3.2
1,088,241	+		CCNA_01008	0.87	+0.3
1,088,249	-		CCNA_01008	0.87	+3.3
1,088,252	+		CCNA_01008	0.87	+0.8
1,088,267	-		CCNA_01008	0.88	+1.9
1,088,272	+		CCNA_01008	0.88	-1.8
1,088,280	-		CCNA_01008	0.89	+2.9
1,088,280	-		CCNA_01008	0.89	+3.0
1,088,280	-		CCNA_01008	0.89	+2.2
1,088,280	-		CCNA_01008	0.89	+3.3
1,088,288	+		CCNA_01008	0.89	-0.6
1,088,312	+				-0.1
1,088,393	-				+3.5
1,088,393	-				+3.9
1,088,394	+				+2.8
1,088,414	+				-0.1
1,088,420	-				+3.6
1,088,422	-				+3.0
1,088,459	+				-0.3
1,088,459	+				+0.1
1,088,459	+				+1.3
1,088,459	+				-1.5
1,088,467	-				+2.8
1,088,467	-				+3.5
1,088,469	-				+3.0
1,088,480	-				+2.4
1,088,480	-				+1.9
1,088,489	-				+2.7
1,088,494	-				+2.6
1,088,494	-				+3.8
1,088,495	-				+2.1
1,088,501	-				+3.6
1,088,512	-				+3.6
1,088,512	-				+2.9
1,088,520	+				-0.6
1,088,528	-				+2.5
1,088,528	-				+3.1
1,088,549	-				+3.7
1,088,553	+				-0.9
1,088,607	+				+0.6
1,088,616	+				+0.6
1,088,629	+				+0.7
1,088,629	+				+0.6
1,088,639	-				+2.3
1,088,639	-				+1.0
1,088,639	-				+3.0
1,088,673	-		CCNA_01009	0.10	+1.3
1,088,673	-		CCNA_01009	0.10	+0.5
1,088,685	+		CCNA_01009	0.12	+0.1
1,088,688	-		CCNA_01009	0.12	+1.5
1,088,693	-		CCNA_01009	0.13	+1.6
1,088,741	-		CCNA_01009	0.19	+2.3
1,088,742	+		CCNA_01009	0.19	+1.1
1,088,797	-		CCNA_01009	0.25	+2.0
1,088,800	+		CCNA_01009	0.26	-0.8
1,088,826	+		CCNA_01009	0.29	+0.1
1,088,826	+		CCNA_01009	0.29	-1.6
1,088,826	+		CCNA_01009	0.29	-1.3
1,088,826	+		CCNA_01009	0.29	-0.0
1,088,834	-		CCNA_01009	0.30	+3.3
1,088,834	-		CCNA_01009	0.30	+2.1
1,088,834	-		CCNA_01009	0.30	+2.7
1,088,834	-		CCNA_01009	0.30	+2.2
1,088,834	-		CCNA_01009	0.30	+2.0
1,088,834	-				+3.4
1,088,834	-		CCNA_01009	0.30	+1.2
1,088,834	-		CCNA_01009	0.30	+2.0
1,088,865	+		CCNA_01009	0.34	-0.6
1,088,873	-		CCNA_01009	0.35	+3.2
1,088,883	+		CCNA_01009	0.36	+0.0
1,088,886	-		CCNA_01009	0.36	+1.1
1,088,891	-		CCNA_01009	0.37	+2.6
1,088,891	-		CCNA_01009	0.37	+2.5
1,088,913	-		CCNA_01009	0.40	-0.7
1,088,913	-		CCNA_01009	0.40	+2.2
1,088,955	+		CCNA_01009	0.45	+0.7
1,089,012	-		CCNA_01009	0.52	+1.3
1,089,018	+		CCNA_01009	0.53	+1.3
1,089,021	-		CCNA_01009	0.53	+0.1
1,089,026	-		CCNA_01009	0.54	+2.8
1,089,028	+		CCNA_01009	0.54	-0.4
1,089,036	-		CCNA_01009	0.55	+0.0
1,089,139	+		CCNA_01009	0.67	-0.1
1,089,139	+		CCNA_01009	0.67	-1.7
1,089,149	+		CCNA_01009	0.69	+1.3
1,089,157	-		CCNA_01009	0.70	+3.7
1,089,162	-		CCNA_01009	0.70	-0.1
1,089,162	-		CCNA_01009	0.70	+1.6
1,089,197	-		CCNA_01009	0.75	+3.3
1,089,258	-		CCNA_01009	0.82	+1.6
1,089,343	+				-0.3
1,089,368	-				+3.2
1,089,385	+				-0.5
1,089,456	-				+3.0
1,089,488	-				+4.1
1,089,488	-				+3.9
1,089,493	-				+4.3
1,089,507	+				-0.4
1,089,515	-				+4.2
1,089,515	-				+4.4
1,089,524	+				-1.8
1,089,570	-				+4.3
1,089,623	+				+0.3
1,089,638	+				-0.6
1,089,639	-				+1.8
1,089,639	-				+2.7
1,089,639	-				+2.5
1,089,639	-				+2.0
1,089,644	-				+2.4
1,089,646	-				+1.6
1,089,685	+				+2.5
1,089,693	-		CCNA_01010	0.11	+2.1
1,089,717	-		CCNA_01010	0.13	+2.9
1,089,717	-		CCNA_01010	0.13	+1.6
1,089,734	+		CCNA_01010	0.14	-0.9
1,089,736	+		CCNA_01010	0.14	+1.1
1,089,736	+		CCNA_01010	0.14	-0.6
1,089,736	+		CCNA_01010	0.14	-0.5
1,089,736	+		CCNA_01010	0.14	-1.5
1,089,744	-		CCNA_01010	0.14	+0.6
1,089,744	-		CCNA_01010	0.14	+1.7
1,089,744	-		CCNA_01010	0.14	+2.2
1,089,744	-		CCNA_01010	0.14	+1.5
1,089,774	-		CCNA_01010	0.16	+1.4
1,089,802	-		CCNA_01010	0.18	+2.1
1,089,834	-		CCNA_01010	0.20	+3.3
1,089,837	+		CCNA_01010	0.20	+1.0
1,089,859	-		CCNA_01010	0.22	+1.9
1,089,891	-		CCNA_01010	0.24	+1.9
1,089,898	-		CCNA_01010	0.24	+0.6
1,089,898	-		CCNA_01010	0.24	+1.2
1,089,898	-		CCNA_01010	0.24	+2.2
1,089,898	-		CCNA_01010	0.24	+1.7
1,089,927	-		CCNA_01010	0.26	+2.5
1,089,927	-		CCNA_01010	0.26	+1.8
1,089,963	+		CCNA_01010	0.29	-0.5
1,089,973	+		CCNA_01010	0.29	+1.1
1,090,028	+		CCNA_01010	0.33	-0.1
1,090,064	-		CCNA_01010	0.35	+1.8
1,090,086	-		CCNA_01010	0.37	+1.4
1,090,088	+		CCNA_01010	0.37	+1.1
1,090,113	-		CCNA_01010	0.38	+1.9
1,090,127	+		CCNA_01010	0.39	-1.0
1,090,174	-		CCNA_01010	0.42	+0.7
1,090,179	-		CCNA_01010	0.43	+1.5
1,090,184	+		CCNA_01010	0.43	-0.4
1,090,219	-		CCNA_01010	0.45	+1.8
1,090,219	-		CCNA_01010	0.45	+1.4
1,090,237	-		CCNA_01010	0.46	+2.9
1,090,238	+		CCNA_01010	0.46	+0.7
1,090,238	+		CCNA_01010	0.46	-0.3
1,090,246	-		CCNA_01010	0.47	+1.9
1,090,268	+		CCNA_01010	0.48	-1.7
1,090,270	+		CCNA_01010	0.48	-1.6
1,090,276	-		CCNA_01010	0.49	+1.5
1,090,326	+		CCNA_01010	0.52	-1.4
1,090,326	+		CCNA_01010	0.52	-0.5
1,090,326	+		CCNA_01010	0.52	+0.0
1,090,326	+		CCNA_01010	0.52	+1.0
1,090,326	+		CCNA_01010	0.52	-1.2
1,090,334	-		CCNA_01010	0.53	+3.0
1,090,334	-		CCNA_01010	0.53	+2.3
1,090,334	-		CCNA_01010	0.53	-0.1
1,090,336	-		CCNA_01010	0.53	+0.9
1,090,336	-		CCNA_01010	0.53	+1.5
1,090,341	+		CCNA_01010	0.53	-1.1
1,090,362	-		CCNA_01010	0.54	+1.2
1,090,383	-		CCNA_01010	0.56	+1.1
1,090,388	+		CCNA_01010	0.56	+1.1
1,090,391	-		CCNA_01010	0.56	+3.5
1,090,396	-		CCNA_01010	0.57	+1.2
1,090,401	-		CCNA_01010	0.57	+1.7