Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01005

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,084,675	-		CCNA_01002	0.89	+2.8
1,084,680	-		CCNA_01002	0.90	+2.0
1,084,680	-		CCNA_01002	0.90	+1.9
1,084,696	-				+1.9
1,084,723	-				+2.3
1,084,723	-				+2.4
1,084,732	+				+1.1
1,084,739	+				-0.5
1,084,739	+				+0.3
1,084,747	-				+1.6
1,084,764	+				-0.2
1,084,844	-		CCNA_01003	0.26	+2.4
1,084,865	-		CCNA_01003	0.32	+0.7
1,084,917	-		CCNA_01003	0.49	+2.9
1,084,922	-		CCNA_01003	0.50	+2.4
1,084,937	+		CCNA_01003	0.55	-0.0
1,084,937	+		CCNA_01003	0.55	+1.3
1,084,937	+		CCNA_01003	0.55	+0.6
1,084,937	+		CCNA_01003	0.55	-0.1
1,084,937	+		CCNA_01003	0.55	+1.3
1,084,945	-		CCNA_01003	0.57	+1.4
1,084,945	-		CCNA_01003	0.57	+0.7
1,084,945	-		CCNA_01003	0.57	+1.4
1,084,945	-		CCNA_01003	0.57	+1.6
1,084,945	-		CCNA_01003	0.57	-0.8
1,084,945	-		CCNA_01003	0.57	+1.3
1,084,945	-		CCNA_01003	0.57	+1.5
1,084,958	-		CCNA_01003	0.61	+0.9
1,084,958	-		CCNA_01003	0.61	+1.3
1,084,971	-		CCNA_01003	0.65	+2.0
1,084,995	+		CCNA_01003	0.73	+1.6
1,085,001	-		CCNA_01003	0.75	+0.2
1,085,027	+		CCNA_01003	0.83	+0.3
1,085,035	-		CCNA_01003	0.85	+2.7
1,085,069	-				+2.5
1,085,084	+				+1.3
1,085,084	-				+1.5
1,085,092	-				+1.8
1,085,092	-				+1.6
1,085,104	+				-1.0
1,085,105	-				+1.1
1,085,112	-				+0.8
1,085,117	-				-0.5
1,085,127	-				+1.1
1,085,138	-				+0.5
1,085,140	+				+0.7
1,085,175	-				+1.6
1,085,199	+				-1.2
1,085,199	+				+0.5
1,085,199	+				+4.1
1,085,199	+				+2.3
1,085,199	+				+0.8
1,085,207	-				-0.6
1,085,207	-				+0.4
1,085,207	-				+0.4
1,085,229	+				-0.7
1,085,291	+		CCNA_01004	0.21	+1.9
1,085,307	+		CCNA_01004	0.25	+0.8
1,085,307	-		CCNA_01004	0.25	+1.2
1,085,320	+		CCNA_01004	0.28	+1.7
1,085,320	+		CCNA_01004	0.28	+1.4
1,085,383	-				+3.1
1,085,401	+		CCNA_01004	0.46	+1.2
1,085,444	-		CCNA_01004	0.56	+0.1
1,085,444	-		CCNA_01004	0.56	+0.7
1,085,581	+		CCNA_01004	0.87	+0.7
1,085,606	+				+1.0
1,085,609	+				+1.4
1,085,635	+				+2.6
1,085,635	+				+1.4
1,085,643	+				+0.8
1,085,650	-				+1.8
1,085,663	-				+0.4
1,085,666	+				+0.8
1,085,675	-				-1.2
1,085,676	+				+1.0
1,085,688	+				+1.9
1,085,696	-		CCNA_01005	0.10	+0.1
1,085,698	+		CCNA_01005	0.11	+1.0
1,085,698	+		CCNA_01005	0.11	+1.5
1,085,715	+		CCNA_01005	0.15	+2.7
1,085,715	+		CCNA_01005	0.15	+1.2
1,085,721	+		CCNA_01005	0.16	+0.8
1,085,723	-		CCNA_01005	0.17	-0.1
1,085,767	-		CCNA_01005	0.27	-0.5
1,085,767	-		CCNA_01005	0.27	+0.6
1,085,813	+		CCNA_01005	0.38	+1.1
1,085,828	+		CCNA_01005	0.42	-0.6
1,085,882	+		CCNA_01005	0.55	+1.8
1,085,927	+		CCNA_01005	0.65	+0.1
1,085,927	+		CCNA_01005	0.65	-0.7
1,085,927	+		CCNA_01005	0.65	-0.3
1,085,935	-		CCNA_01005	0.67	+4.3
1,085,935	-		CCNA_01005	0.67	+4.2
1,085,935	-		CCNA_01005	0.67	+4.1
1,085,936	-		CCNA_01005	0.68	+2.1
1,085,936	-		CCNA_01005	0.68	+3.0
1,085,940	-		CCNA_01005	0.69	-0.8
1,085,942	+		CCNA_01005	0.69	+1.7
1,085,974	+		CCNA_01005	0.77	+2.2
1,085,995	+		CCNA_01005	0.82	+0.7
1,086,015	-		CCNA_01005	0.86	+0.6
1,086,016	-		CCNA_01005	0.87	-1.7
1,086,025	-		CCNA_01005	0.89	+0.3
1,086,042	-				+0.4
1,086,066	+				+2.2
1,086,072	+				+1.9
1,086,079	+				+3.1
1,086,108	+				+2.1
1,086,108	+				+1.6
1,086,116	-		CCNA_01006	0.11	+0.0
1,086,143	+		CCNA_01006	0.20	+3.4
1,086,163	+		CCNA_01006	0.26	+1.6
1,086,168	+		CCNA_01006	0.28	+3.9
1,086,168	+		CCNA_01006	0.28	+3.3
1,086,168	+		CCNA_01006	0.28	+3.1
1,086,176	-		CCNA_01006	0.30	-1.1
1,086,195	+		CCNA_01006	0.36	+3.0
1,086,201	-		CCNA_01006	0.38	+0.1
1,086,205	+		CCNA_01006	0.39	+3.7
1,086,213	-				+2.1
1,086,227	-		CCNA_01006	0.46	-1.6
1,086,243	+		CCNA_01006	0.52	+3.3
1,086,310	+		CCNA_01006	0.73	+3.1
1,086,310	+		CCNA_01006	0.73	+2.7
1,086,318	-		CCNA_01006	0.76	-1.4
1,086,318	-		CCNA_01006	0.76	+0.6
1,086,410	-				-0.6
1,086,495	-				+2.0
1,086,519	-		CCNA_01007	0.14	+1.4
1,086,536	+		CCNA_01007	0.24	+0.1
1,086,536	+		CCNA_01007	0.24	-1.5
1,086,536	+		CCNA_01007	0.24	+1.0
1,086,536	+		CCNA_01007	0.24	+0.1
1,086,540	+		CCNA_01007	0.26	-0.8
1,086,544	-		CCNA_01007	0.29	+1.8
1,086,544	-		CCNA_01007	0.29	+1.9
1,086,544	-		CCNA_01007	0.29	+2.3
1,086,550	+		CCNA_01007	0.32	+1.0
1,086,556	-		CCNA_01007	0.36	+0.3
1,086,608	-		CCNA_01007	0.67	+2.7
1,086,651	-				+2.2
1,086,659	+				+0.4
1,086,670	+				+0.1
1,086,672	+				+1.0
1,086,680	-				+2.7
1,086,695	+				-0.3
1,086,703	-				+1.5
1,086,751	-				+2.7
1,086,817	+				+0.2
1,086,817	+				-0.9
1,086,817	+				-0.7
1,086,825	-				+4.5
1,086,825	-				+3.6
1,086,825	-				+4.0
1,086,825	-				+3.1
1,086,842	+				+1.0
1,086,845	-				+3.7
1,086,850	-				+3.9
1,086,850	-				+4.5
1,086,850	-				+4.3
1,086,850	-				+4.3
1,086,854	+				-0.8
1,086,854	+				-0.2
1,086,854	+				-2.4
1,086,862	-				+4.5
1,086,862	-				+3.9
1,086,862	-				+3.9
1,086,862	-				+4.0
1,086,862	-				+4.4
1,086,862	-				+4.2
1,086,897	+				+1.1
1,086,900	+				-0.4
1,086,980	+		CCNA_01008	0.11	-1.1
1,086,980	+		CCNA_01008	0.11	-0.0
1,086,988	-		CCNA_01008	0.11	+4.5
1,086,988	-		CCNA_01008	0.11	+4.6
1,086,988	-		CCNA_01008	0.11	+4.3
1,087,020	-		CCNA_01008	0.13	+3.7
1,087,035	+		CCNA_01008	0.14	-1.3
1,087,035	+		CCNA_01008	0.14	-1.3
1,087,055	-		CCNA_01008	0.15	+3.4
1,087,064	+		CCNA_01008	0.16	+0.2
1,087,064	+		CCNA_01008	0.16	+1.1
1,087,070	-		CCNA_01008	0.16	+3.7